Searching by gene name

Cancer Type-Centric Fusions Results

Cancer Type: Tier:

Tumor type can be selected from twelve tumor types.

Cancer	TCGA SampleId	FusionPair	E-value	Tier	Frame	phosphorylation	ubiquitination	WGS
BRCA	TCGA.BH.A0B9.01A	AARS__COG4	1.2	tier1	In-frame	A1 : B1	A1 : B0	non-validated
BRCA	TCGA.BH.A0B9.01A	AARS__ST3GAL2	0.64	tier1	Out-of-frame	A0 : B0	A0 : B0	non-validated
BRCA	TCGA.BH.A0HF.01A	AATF__GOSR2	0.021	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.AR.A0TX.01A	ABAT__C16orf62	0.2	tier1	5UTR-CDS	A0 : B0	A0 : B0	non-validated
BRCA	TCGA.EW.A3U0.01A	ABCA1__HDHD3	2.4	tier1	5UTR-5UTR	A0 : B0	A0 : B0	non-validated
BRCA	TCGA.A2.A3XZ.01A	ABCA5__BCAS3	0.34	tier1	5UTR-CDS	A0 : B0	A0 : B0	NA
BRCA	TCGA.AC.A3TN.01A	ABCB8__NOS3	0.06	tier1	Out-of-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.A7.A13D.01A	ABCB9__EIF2B1	0.004	tier1	In-frame	A0 : B0	A0 : B0	validated
BRCA	TCGA.GM.A2DD.01A	ABCC10__PPP2R5D	0.55	tier3	In-frame	A0 : B1	A0 : B0	NA
BRCA	TCGA.B6.A0IK.01A	ABCC3__AC217773.1	100.0	tier2	NA	A0 : B0	A0 : B0	NA
BRCA	TCGA.BH.A1F0.01A	ABHD14B__POC1A	0.55	tier4	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.AC.A8OQ.01A	ABHD2__ACAN	2.8	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.D8.A1J9.01A	ABL1__ADAMTSL2	0.26	tier1	In-frame	A1 : B1	A0 : B0	NA
BRCA	TCGA.AO.A12G.01A	ABLIM1__PTCD2	0.53	tier2	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.AN.A0FJ.01A	ABR__KIAA0664	1.0	tier2	CDS-5UTR	A0 : B0	A0 : B0	NA
BRCA	TCGA.BH.A0AV.01A	ABR__PITPNA	2.5	tier1	Out-of-frame	A0 : B0	A0 : B0	non-validated
BRCA	TCGA.AR.A256.01A	ABTB2__APIP	0.83	tier2	Out-of-frame	A0 : B1	A0 : B0	non-validated
BRCA	TCGA.AN.A0XU.01A	ABTB2__ATXN3	0.35	tier2	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.E9.A295.01A	AC006465.3__MRAP	0.26	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.AR.A0TT.01A	AC008537.4__ITPKC	2.2	tier4	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.C8.A12Z.01A	AC010859.1__OC90	1.5	tier1	5UTR-5UTR	A0 : B0	A0 : B0	NA
BRCA	TCGA.EW.A6S9.01A	AC011450.1__GLIS3	0.43	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.D8.A140.01A	AC013461.1__RAPGEF4	1.1	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.EW.A1J1.01A	AC040934.1__ARHGAP23	0.08	tier2	3UTR-CDS	A0 : B1	A0 : B0	NA
BRCA	TCGA.A7.A13D.01B	AC069368.3__ZNF609	2.8	tier2	NA	A0 : B0	A0 : B0	validated
BRCA	TCGA.EW.A6SD.01A	AC103810.1__STXBP4	1.2	tier2	5UTR-CDS	A0 : B0	A0 : B0	NA
BRCA	TCGA.D8.A27E.01A	AC110285.1__BAIAP2	0.1	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.A2.A0YT.01A	AC110491.1__ARL6	0.8	tier1	NA	A0 : B0	A0 : B0	NA
BRCA	TCGA.BH.A18T.01A	AC113191.1__NKAIN3	1.6	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.E9.A22D.01A	ACACA__ACCN1	0.031	tier1	Out-of-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.3C.AALI.01A	ACACA__TANC2	0.03	tier2	Out-of-frame	A0 : B1	A0 : B0	NA
BRCA	TCGA.AN.A0XP.01A	ACACB__UNG	0.2	tier3	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.A2.A1FW.01A	ACBD6__IVNS1ABP	3.0	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.AC.A3QQ.01A	ACBD6__PGBD2	0.59	tier1	CDS-5UTR	A0 : B0	A0 : B0	NA
BRCA	TCGA.AN.A0G0.01A	ACER3__NARS2	0.66	tier1	Out-of-frame	A0 : B0	A0 : B0	validated
BRCA	TCGA.A2.A0EQ.01A	ACER3__NRL	0.15	tier2	CDS-5UTR	A0 : B0	A0 : B0	NA
BRCA	TCGA.A1.A0SM.01A	ACER3__THRSP	1.1	tier4	CDS-3UTR	A0 : B0	A0 : B0	non-validated
BRCA	TCGA.E2.A109.01A	ACER3__UVRAG	0.026	tier1	In-frame	A0 : B0	A0 : B0	validated
BRCA	TCGA.D8.A1JM.01A	ACLY__DNAJC7	1.1	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.LL.A6FR.01A	ACLY__DNAJC7	1.1	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.OL.A5RY.01A	ACO1__TYRP1	0.36	tier1	5UTR-5UTR	A0 : B0	A0 : B0	NA
BRCA	TCGA.BH.A18T.01A	ACO2__TEF	1.5	tier1	Out-of-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.D8.A1X5.01A	ACO2__ZC3H7B	0.049	tier1	In-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.E9.A1R7.01A	ACOT11__C8B	1.9	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.D8.A1XZ.01A	ACOT7__FUCA1	0.61	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.C8.A12Q.01A	ACOT7__KLHL21	0.56	tier2	Out-of-frame	A0 : B0	A0 : B0	non-validated
BRCA	TCGA.A2.A0T1.01A	ACOT7__NSMCE2	100.0	tier1	In-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.A2.A04W.01A	ACOT7__TTC34	0.22	tier4	Out-of-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.A7.A13D.01B	ACOT9__APOO	1.5	tier1	CDS-3UTR	A0 : B0	A0 : B0	non-validated
BRCA	TCGA.AC.A8OQ.01A	ACOT9__APOO	1.5	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.A8.A07I.01A	ACSF2__SPAG9	2.3	tier1	In-frame	A1 : B1	A0 : B0	validated
BRCA	TCGA.AC.A8OQ.01A	ACSL3__MOGAT1	0.73	tier2	5UTR-CDS	A0 : B0	A0 : B0	NA
BRCA	TCGA.D8.A1XJ.01A	ACSS1__PHACTR3	0.039	tier1	In-frame	A0 : B1	A0 : B0	NA
BRCA	TCGA.C8.A134.01A	ACSS2__GSS	0.21	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.OL.A66I.01A	ACTB__HLA-DQB1	0.12	tier4	3UTR-5UTR	A0 : B0	A0 : B0	NA
BRCA	TCGA.A2.A0CW.01A	ACTB__KIAA0182	0.51	tier3	NA	A0 : B0	A0 : B0	NA
BRCA	TCGA.BH.A18T.01A	ACTB__RNF216	0.11	tier1	5UTR-CDS	A0 : B0	A0 : B0	NA
BRCA	TCGA.BH.A0DQ.01A	ACTN1__SCGN	0.68	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.AN.A0G0.01A	ACTN2__CHRM3	0.13	tier1	CDS-5UTR	A1 : B0	A0 : B0	non-validated
BRCA	TCGA.BH.A0B9.01A	ACTN4__CAPZB	0.03	tier1	In-frame	A0 : B1	A0 : B0	non-validated
BRCA	TCGA.E2.A150.01A	ACTN4__FTO	0.17	tier1	In-frame	A1 : B1	A1 : B1	NA
BRCA	TCGA.A7.A0DA.01A	ADAM10__FIZ1	1.7	tier1	CDS-5UTR	A1 : B0	A0 : B0	NA
BRCA	TCGA.C8.A8HP.01A	ADAM10__PLAC9	0.48	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.E2.A105.01A	ADAM18__LSM1	0.34	tier2	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.AN.A0FX.01A	ADAM32__ZNF251	0.9	tier2	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.D8.A1JK.01A	ADAM9__CLYBL	0.78	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.WT.AB41.01A	ADAM9__PROSC	4.2	tier1	In-frame	A0 : B1	A0 : B0	NA
BRCA	TCGA.AC.A2B8.01A	ADAMTS10__MLLT1	0.016	tier1	In-frame	A0 : B1	A0 : B0	NA
BRCA	TCGA.AN.A0AR.01A	ADAMTS12__C1QTNF3	1.1	tier2	Out-of-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.AN.A0XU.01A	ADAMTS12__ZFR	1.5	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.AC.A2BM.01A	ADAMTS13__LHX2	0.12	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.A7.A4SD.01A	ADAMTS16__ETV6	1.4	tier1	In-frame	A0 : B1	A0 : B0	NA
BRCA	TCGA.BH.A0BP.01A	ADAMTS17__PCDHA8	0.096	tier2	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.A1.A0SO.01A	ADAP1__C8orf38	0.061	tier3	CDS-5UTR	A0 : B0	A0 : B0	NA
BRCA	TCGA.A7.A5ZV.01A	ADC__PHIP	1.6	tier1	In-frame	A0 : B1	A0 : B1	NA
BRCA	TCGA.A8.A07I.01A	ADCK2__DPP6	1.4	tier1	In-frame	A0 : B1	A0 : B0	validated
BRCA	TCGA.AR.A0TW.01A	ADCY1__EYA4	0.21	tier1	CDS-5UTR	A0 : B0	A0 : B0	NA
BRCA	TCGA.A2.A25D.01A	ADCY5__PTPLB	0.091	tier1	Out-of-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.E9.A1RH.01A	ADCY9__GLYR1	1.0	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.LL.A5YP.01A	ADCY9__PRSS27	0.16	tier2	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.S3.AA0Z.01A	ADCY9__RMI2	1.4	tier2	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.A2.A0T7.01A	ADCY9__SRL	0.44	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.AO.A0J2.01A	ADD1__SH3BP2	0.13	tier3	5UTR-CDS	A0 : B1	A0 : B0	validated
BRCA	TCGA.BH.A1EY.01A	ADD3__XPNPEP1	4.8	tier1	5UTR-CDS	A0 : B0	A0 : B0	NA
BRCA	TCGA.GI.A2C9.01A	ADI1__KHDRBS3	3.3	tier1	In-frame	A0 : B0	A0 : B0	non-validated
BRCA	TCGA.E9.A22E.01A	ADIPOR1__CYB5R1	0.13	tier1	5UTR-CDS	A0 : B0	A0 : B0	NA
BRCA	TCGA.E9.A243.01A	ADIPOR1__RGS8	0.009	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.A8.A07R.01A	ADIPOR2__ERC1	0.032	tier1	5UTR-CDS	A0 : B0	A0 : B0	NA
BRCA	TCGA.E2.A1LL.01A	ADIPOR2__FOXJ2	0.23	tier1	In-frame	A0 : B0	A0 : B0	non-validated
BRCA	TCGA.B6.A0IK.01A	ADIPOR2__WNT5B	0.094	tier1	5UTR-5UTR	A0 : B0	A0 : B0	NA
BRCA	TCGA.AN.A0AJ.01A	ADK__KCNMA1	1.8	tier1	In-frame	A0 : B1	A0 : B0	NA
BRCA	TCGA.BH.A18U.01A	ADK__LRRTM3	0.91	tier1	Out-of-frame	A0 : B0	A0 : B0	validated
BRCA	TCGA.BH.A1EY.01A	ADK__RP11-548K23.11	1.7	tier2	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.D8.A1JI.01A	ADK__SPTAN1	0.58	tier2	CDS-5UTR	A0 : B0	A0 : B0	NA
BRCA	TCGA.AO.A03P.01A	ADK__TTC23	1.0	tier1	CDS-5UTR	A0 : B0	A0 : B0	NA
BRCA	TCGA.A2.A25B.01A	ADNP__DPM1	0.073	tier1	5UTR-CDS	A0 : B0	A0 : B0	non-validated
BRCA	TCGA.A1.A0SJ.01A	ADNP__GHRH	0.12	tier2	5UTR-5UTR	A0 : B0	A0 : B0	NA
BRCA	TCGA.A8.A08J.01A	ADNP__MMP24	0.28	tier3	Out-of-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.A1.A0SJ.01A	ADNP__SYCP2	1.2	tier1	In-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.D8.A1XD.01A	ADNP__ZNF841	0.071	tier1	5UTR-CDS	A0 : B0	A0 : B0	NA
BRCA	TCGA.A7.A2KD.01A	ADNP2__L3MBTL4	0.071	tier1	5UTR-CDS	A0 : B0	A0 : B0	NA
BRCA	TCGA.BH.A1F2.01A	ADNP2__PQLC1	1.7	tier1	Out-of-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.AR.A5QP.01A	ADPRHL2__SHPK	0.72	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.AO.A129.01A	ADRBK1__BAIAP2	0.034	tier1	In-frame	A0 : B1	A0 : B1	NA
BRCA	TCGA.AR.A0TS.01A	ADRBK1__IQGAP1	0.89	tier1	In-frame	A1 : B1	A1 : B0	NA
BRCA	TCGA.A2.A0CL.01A	ADRBK1__POLD4	0.032	tier1	Out-of-frame	A1 : B0	A1 : B0	NA
BRCA	TCGA.A2.A0T3.01A	ADRBK2__SF3A1	0.5	tier1	In-frame	A1 : B1	A0 : B0	NA
BRCA	TCGA.BH.A203.01A	ADSS__SERTAD4	1.8	tier1	CDS-5UTR	A0 : B0	A0 : B0	NA
BRCA	TCGA.A2.A0D2.01A	AFAP1__ABLIM2	0.3	tier1	In-frame	A0 : B0	A0 : B0	validated
BRCA	TCGA.OL.A5D7.01A	AFAP1__ABLIM2	0.3	tier1	In-frame	A1 : B1	A0 : B0	NA
BRCA	TCGA.AC.A2QH.01B	AFF3__ASZ1	0.044	tier1	In-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.B6.A0IH.01A	AFF3__TMEM182	1.0	tier2	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.E2.A1LE.01A	AFF4__FSTL4	0.53	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.AR.A2LR.01A	AGAP1__FAM164A	0.08	tier1	Out-of-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.A7.A0DA.01A	AGAP1__RINT1	2.3	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.A8.A08O.01A	AGAP1__WDR11	0.085	tier1	In-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.AQ.A54N.01A	AGAP3__GIMAP1	0.51	tier1	CDS-5UTR	A1 : B0	A0 : B0	NA
BRCA	TCGA.AQ.A54N.01A	AGAP3__GIMAP2	0.58	tier1	CDS-5UTR	A1 : B0	A0 : B0	NA
BRCA	TCGA.BH.A1F0.01A	AGAP3__TG	0.002	tier1	Out-of-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.AN.A0AM.01A	AGBL4__FAF1	0.05	tier2	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.BH.A0C0.01A	AGPAT2__CDC42SE1	0.049	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.A8.A09Q.01A	AGPAT3__KSR1	0.11	tier1	5UTR-CDS	A0 : B1	A0 : B0	NA
BRCA	TCGA.A8.A07O.01A	AGPAT3__PDXK	1.5	tier1	5UTR-CDS	A0 : B0	A0 : B0	NA
BRCA	TCGA.B6.A0RV.01A	AGR2__ANKS1A	1.4	tier4	NA	A0 : B0	A0 : B0	NA
BRCA	TCGA.BH.A0DK.01A	AGRN__NOC4L	0.12	tier3	In-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.E9.A5FK.01A	AHCYL1__DENND2D	1.0	tier1	In-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.EW.A1IX.01A	AHI1__CHEK2	1.9	tier1	In-frame	A0 : B1	A0 : B0	NA
BRCA	TCGA.A2.A3XS.01A	AHI1__MYB	0.018	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.E2.A1B1.01A	AHNAK__EIF2AK2	1.9	tier3	NA	A0 : B0	A0 : B0	NA
BRCA	TCGA.A8.A09E.01A	AHNAK__RPS6KA4	0.17	tier1	Out-of-frame	A1 : B0	A1 : B0	NA
BRCA	TCGA.AC.A23H.01A	AHNAK__ZNF827	5.0	tier3	3UTR-5UTR	A0 : B0	A0 : B0	NA
BRCA	TCGA.AN.A0FY.01A	AHR__CDK14	0.33	tier1	In-frame	A1 : B0	A1 : B0	NA
BRCA	TCGA.AR.A0TP.01A	AIM1__ARMC2	0.079	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.EW.A1P3.01A	AIM1__MYB	0.089	tier1	NA	A0 : B0	A0 : B0	NA
BRCA	TCGA.A8.A07I.01A	AKAP1__ANKFN1	0.028	tier2	5UTR-CDS	A0 : B0	A0 : B0	validated
BRCA	TCGA.E2.A15H.01A	AKAP1__C17orf67	0.28	tier1	CDS-5UTR	A0 : B0	A0 : B0	validated
BRCA	TCGA.E2.A15H.01A	AKAP1__GGA3	0.55	tier1	5UTR-CDS	A0 : B0	A0 : B0	non-validated
BRCA	TCGA.A8.A09I.01A	AKAP1__WIPF2	0.3	tier2	5UTR-5UTR	A0 : B0	A0 : B0	non-validated
BRCA	TCGA.A8.A06U.01A	AKAP13__CHSY3	0.52	tier2	5UTR-CDS	A0 : B0	A0 : B0	NA
BRCA	TCGA.GM.A2DK.01A	AKAP13__IGF1R	0.038	tier1	5UTR-CDS	A0 : B1	A0 : B0	NA
BRCA	TCGA.EW.A1P0.01A	AKAP13__NRG1	1.5	tier1	Out-of-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.A8.A07L.01A	AKAP8__VMP1	0.078	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.AR.A0TT.01A	AKAP8L__EFCAB3	1.5	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.OL.A5RW.01A	AKAP9__RUNX1	0.93	tier3	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.E9.A1RF.01A	AKD1__FAM184A	0.022	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.A2.A1FW.01A	AKIRIN2__ANKRD55	0.51	tier2	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.BH.A0WA.01A	AL109749.1__AIFM1	0.92	tier3	Out-of-frame	A0 : B1	A0 : B0	non-validated
BRCA	TCGA.GI.A2C9.01A	AL109749.1__ZC4H2	1.1	tier1	In-frame	A0 : B0	A0 : B0	non-validated
BRCA	TCGA.E2.A155.01A	AL137003.1__PTPRK	2.6	tier1	NA	A0 : B0	A0 : B0	NA
BRCA	TCGA.A2.A1FV.01A	AL139022.1__PEBP4	1.1	tier2	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.A8.A09R.01A	AL139022.1__RAB15	1.2	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.C8.A12L.01A	ALCAM__EIF2A	0.37	tier1	In-frame	A1 : B1	A0 : B0	non-validated
BRCA	TCGA.BH.A0BP.01A	ALCAM__YIF1B	1.7	tier1	In-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.AC.A4ZE.01A	ALDH3B2__ODZ4	0.031	tier2	5UTR-CDS	A0 : B0	A0 : B0	NA
BRCA	TCGA.AR.A1AS.01A	ALDOA__FADS2	1.1	tier3	3UTR-CDS	A0 : B0	A0 : B1	NA
BRCA	TCGA.D8.A1X6.01A	ALDOA__MPHOSPH8	1.3	tier3	3UTR-CDS	A0 : B0	A0 : B0	NA
BRCA	TCGA.A2.A0CK.01A	ALDOA__NDUFV1	1.7	tier3	NA	A0 : B0	A0 : B0	NA
BRCA	TCGA.BH.A1FC.01A	ALG14__C1orf194	100.0	tier1	Out-of-frame	A0 : B0	A0 : B0	non-validated
BRCA	TCGA.BH.A0AU.01A	ALG14__NRD1	0.041	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.A2.A0T4.01A	ALG8__NARS2	0.15	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.AC.A6IW.01A	ALPL__FILIP1L	0.11	tier1	NA	A0 : B0	A0 : B0	NA
BRCA	TCGA.B6.A0X7.01A	ALX4__STK33	0.64	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.A8.A09D.01A	AMBRA1__HARBI1	1.3	tier1	5UTR-CDS	A0 : B0	A0 : B0	NA
BRCA	TCGA.D8.A27W.01A	AMFR__ITGAM	2.1	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.BH.A0B9.01A	AMMECR1L__SAP130	0.057	tier1	5UTR-CDS	A0 : B0	A0 : B0	validated
BRCA	TCGA.A8.A06Q.01A	ANAPC16__MICU1	0.1	tier1	5UTR-CDS	A0 : B0	A0 : B0	NA
BRCA	TCGA.E2.A1LL.01A	ANAPC5__KDM2B	0.14	tier1	Out-of-frame	A0 : B0	A0 : B0	non-validated
BRCA	TCGA.E2.A1IH.01A	ANK1__ADAM7	0.024	tier1	In-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.E9.A1N6.01A	ANK3__ATAD1	0.2	tier2	CDS-5UTR	A1 : B0	A0 : B0	NA
BRCA	TCGA.A2.A0CL.01A	ANK3__CDK1	0.29	tier1	CDS-5UTR	A1 : B0	A0 : B0	NA
BRCA	TCGA.AQ.A04L.01B	ANK3__CHN2	1.9	tier1	In-frame	A1 : B1	A0 : B0	NA
BRCA	TCGA.AR.A0TT.01A	ANK3__IFIT5	0.17	tier3	Out-of-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.A7.A26G.01A	ANK3__RHOBTB1	0.68	tier1	CDS-5UTR	A1 : B0	A0 : B0	non-validated
BRCA	TCGA.AQ.A04L.01B	ANK3__SP2	0.47	tier2	Out-of-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.AO.A12D.01A	ANK3__TMPRSS15	0.049	tier2	Out-of-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.E2.A10C.01A	ANK3__WDFY4	0.43	tier1	CDS-5UTR	A1 : B0	A0 : B0	NA
BRCA	TCGA.BH.A0H9.01A	ANKHD1__C5orf32	1.4	tier1	CDS-5UTR	A0 : B0	A0 : B0	NA
BRCA	TCGA.A2.A0CK.01A	ANKHD1__TIAM2	0.6	tier1	In-frame	A1 : B1	A0 : B0	NA
BRCA	TCGA.BH.A0B7.01A	ANKLE2__NHP2L1	2.3	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.GM.A3XL.01A	ANKRD11__LINGO1	0.28	tier1	5UTR-CDS	A0 : B0	A0 : B0	non-validated
BRCA	TCGA.C8.A8HP.01A	ANKRD12__C10orf11	1.3	tier1	5UTR-CDS	A0 : B0	A0 : B0	NA
BRCA	TCGA.A2.A4S3.01A	ANKRD12__MTHFD2L	0.88	tier1	In-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.C8.A1HN.01A	ANKRD17__RPRD1B	0.12	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.C8.A26Y.01A	ANKRD17__WDFY3	1.6	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.AN.A0FZ.01A	ANKRD42__RHOD	0.57	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.AN.A04D.01A	ANKRD46__TMEM222	0.65	tier1	5UTR-CDS	A0 : B0	A0 : B0	validated
BRCA	TCGA.BH.A0B6.01A	ANKS1B__NDUFA12	0.3	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.S3.AA0Z.01A	ANKS3__C16orf71	0.26	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.C8.A138.01A	ANO1__ABCC11	0.24	tier2	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.C8.A1HK.01A	ANO1__ABHD15	0.16	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.A8.A097.01A	ANO1__CYP2R1	1.0	tier1	In-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.E9.A228.01A	ANO1__UNC5D	5.2	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.E2.A1L8.01A	ANO6__IAPP	0.12	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.B6.A0X1.01A	ANO9__DEAF1	0.79	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.BH.A1FL.01A	ANXA10__FAM198B	0.021	tier2	Out-of-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.C8.A12P.01A	ANXA2__RNF114	1.1	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.AN.A0AS.01A	ANXA7__LGALS12	1.7	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.AC.A5EH.01A	AP1M1__RAB8A	0.18	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.BH.A0BR.01A	AP1M1__ZNF93	2.9	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.A2.A25D.01A	AP2A1__DHDH	0.13	tier1	Out-of-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.A8.A07L.01A	AP2A2__TMEM80	0.073	tier1	In-frame	A1 : B0	A1 : B0	NA
BRCA	TCGA.A7.A26G.01A	APBA2__GABRB3	2.7	tier1	5UTR-CDS	A0 : B0	A0 : B0	non-validated
BRCA	TCGA.A2.A0T0.01A	APBB2__DMD	0.37	tier2	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.E9.A22E.01A	APBB2__NSUN7	1.2	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.E2.A15D.01A	APIP__C10orf35	0.62	tier2	CDS-5UTR	A0 : B0	A0 : B0	NA
BRCA	TCGA.AN.A0FS.01A	APLP2__KCNJ5	0.79	tier1	CDS-5UTR	A0 : B0	A0 : B0	NA
BRCA	TCGA.OL.A5D6.01A	APOD__CLDN7	0.97	tier3	3UTR-5UTR	A0 : B0	A0 : B0	NA
BRCA	TCGA.AQ.A04J.01A	APOLD1__CDKN1B	0.44	tier1	CDS-3UTR	A0 : B0	A0 : B0	validated
BRCA	TCGA.A8.A08P.01A	APP__RCAN1	1.3	tier1	In-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.C8.A1HL.01A	APPBP2__DNAH17	0.91	tier4	Out-of-frame	A0 : B0	A1 : B0	NA
BRCA	TCGA.EW.A2FS.01A	APPBP2__SEPT9	0.29	tier3	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.AC.A62V.01A	APPBP2__WISP2	4.5	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.C8.A12Q.01A	APPL1__SPATA12	0.52	tier1	CDS-5UTR	A0 : B0	A0 : B0	non-validated
BRCA	TCGA.E2.A15H.01A	APTX__GNE	4.8	tier1	Out-of-frame	A0 : B0	A0 : B0	validated
BRCA	TCGA.A2.A3XY.01A	AQP1__TYK2	0.12	tier3	3UTR-5UTR	A0 : B0	A0 : B0	NA
BRCA	TCGA.AN.A03Y.01A	ARAP1__MOGAT2	0.66	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.AR.A24L.01A	ARAP1__RP11-831H9.11	1.4	tier1	5UTR-CDS	A0 : B0	A0 : B0	NA
BRCA	TCGA.A1.A0SM.01A	ARAP1__USP35	0.25	tier2	5UTR-5UTR	A0 : B0	A0 : B0	non-validated
BRCA	TCGA.A1.A0SQ.01A	ARFGAP1__SPAG4	0.62	tier2	5UTR-CDS	A0 : B0	A0 : B0	NA
BRCA	TCGA.BH.A0H7.01A	ARFGAP1__UQCC	0.45	tier1	In-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.BH.A0B9.01A	ARFGAP2__CELF1	0.81	tier1	Out-of-frame	A1 : B0	A0 : B0	validated
BRCA	TCGA.A8.A09N.01A	ARFGEF1__CPA6	1.7	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.E2.A14Y.01A	ARFGEF1__CPA6	1.7	tier1	In-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.AN.A0XV.01A	ARFGEF1__RP11-366K18.3	0.032	tier2	Out-of-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.BH.A0H6.01A	ARFGEF2__CNIH2	5.8	tier1	In-frame	A1 : B0	A0 : B0	non-validated
BRCA	TCGA.AR.A0TX.01A	ARFGEF2__FAM19A5	0.83	tier1	In-frame	A1 : B0	A0 : B0	non-validated
BRCA	TCGA.A8.A09D.01A	ARFGEF2__TSHZ2	0.71	tier1	In-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.D8.A13Z.01A	ARFIP1__FGB	0.069	tier1	In-frame	A1 : B1	A0 : B0	NA
BRCA	TCGA.A8.A08J.01A	ARHGAP10__TMEM184C	0.49	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.E2.A105.01A	ARHGAP12__PPPDE2	2.3	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.S3.AA0Z.01A	ARHGAP17__TNRC6A	1.0	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.E9.A248.01A	ARHGAP18__C6orf204	0.096	tier1	CDS-5UTR	A1 : B0	A0 : B0	NA
BRCA	TCGA.BH.A0B7.01A	ARHGAP21__ASPHD2	0.86	tier2	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.AR.A0TX.01A	ARHGAP23__ACCN1	0.22	tier1	In-frame	A0 : B0	A0 : B0	non-validated
BRCA	TCGA.EW.A1J1.01A	ARHGAP23__TEX14	0.32	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.E2.A1IO.01A	ARHGAP24__C4orf14	0.047	tier1	In-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.A8.A06Z.01A	ARHGAP32__AHNAK	1.9	tier1	Out-of-frame	A1 : B1	A0 : B1	NA
BRCA	TCGA.EW.A2FW.01A	ARHGAP32__C20orf24	1.4	tier2	In-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.AO.A0J5.01A	ARHGAP32__FCHSD2	0.46	tier1	CDS-5UTR	A1 : B0	A0 : B0	NA
BRCA	TCGA.D8.A1XZ.01A	ARHGAP35__COL22A1	0.047	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.A1.A0SJ.01A	ARHGAP42__PGR	0.19	tier2	In-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.A2.A0CT.01A	ARHGAP44__DNAH2	0.17	tier1	In-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.E2.A1LL.01A	ARHGDIB__RP11-677C1.2	0.52	tier1	Out-of-frame	A0 : B0	A0 : B0	non-validated
BRCA	TCGA.B6.A402.01A	ARHGEF10L__CSDE1	2.3	tier1	CDS-5UTR	A0 : B0	A0 : B0	NA
BRCA	TCGA.B6.A3ZX.01A	ARHGEF10L__PADI4	1.3	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.BH.A8FY.01A	ARHGEF11__ALDH9A1	0.016	tier2	Out-of-frame	A1 : B0	A0 : B1	NA
BRCA	TCGA.BH.A18T.01A	ARHGEF11__ETV3	0.37	tier1	CDS-5UTR	A1 : B0	A0 : B0	NA
BRCA	TCGA.D8.A1JF.01A	ARHGEF11__ETV3	0.37	tier1	Out-of-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.A8.A09G.01A	ARHGEF12__SIK3	0.18	tier1	Out-of-frame	A1 : B1	A0 : B0	NA
BRCA	TCGA.BH.A0AU.01A	ARHGEF17__EP300	0.22	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.GM.A2DF.01A	ARHGEF17__WDR74	0.14	tier2	CDS-5UTR	A0 : B0	A0 : B0	non-validated
BRCA	TCGA.AQ.A04L.01B	ARHGEF18__C11orf67	0.003	tier1	Out-of-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.E9.A1NG.01A	ARHGEF18__MYO9B	0.01	tier1	CDS-5UTR	A1 : B0	A0 : B0	NA
BRCA	TCGA.A2.A04P.01A	ARHGEF19__ANO7L1	0.12	tier1	NA	A0 : B0	A0 : B0	non-validated
BRCA	TCGA.AR.A256.01A	ARHGEF2__SSR2	0.17	tier1	In-frame	A0 : B0	A0 : B0	non-validated
BRCA	TCGA.AO.A0J6.01A	ARHGEF3__ACP6	0.88	tier1	In-frame	A0 : B0	A0 : B0	non-validated
BRCA	TCGA.C8.A12Q.01A	ARHGEF3__HESX1	1.5	tier3	NA	A0 : B0	A0 : B0	non-validated
BRCA	TCGA.5L.AAT0.01A	ARHGEF3__LTF	1.5	tier1	NA	A0 : B0	A0 : B0	NA
BRCA	TCGA.A7.A13D.01B	ARID1A__DHDDS	0.99	tier3	In-frame	A1 : B0	A0 : B0	non-validated
BRCA	TCGA.C8.A12V.01A	ARID1A__THBS3	0.96	tier1	In-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.E2.A14T.01A	ARID1A__YTHDF2	0.073	tier1	In-frame	A1 : B1	A0 : B0	NA
BRCA	TCGA.E9.A248.01A	ARID1B__AL590867.1	0.1	tier1	CDS-5UTR	A1 : B0	A0 : B0	NA
BRCA	TCGA.E9.A248.01A	ARID1B__PLEKHG1	2.1	tier1	In-frame	A0 : B1	A0 : B0	NA
BRCA	TCGA.BH.A1F6.01A	ARID1B__SNX9	1.2	tier1	In-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.B6.A0RH.01A	ARID2__TMPRSS2	3.5	tier2	NA	A0 : B0	A0 : B0	NA
BRCA	TCGA.AR.A1AV.01A	ARID2__ZNF641	0.035	tier1	In-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.BH.A0AU.01A	ARID3A__PMEPA1	0.14	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.BH.A203.01A	ARID4B__B3GALNT2	0.3	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.OL.A5D8.01A	ARID4B__PCNXL2	0.035	tier1	In-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.AO.A12G.01A	ARID5B__ABLIM1	0.18	tier1	In-frame	A1 : B0	A1 : B0	NA
BRCA	TCGA.A7.A13D.01B	ARIH2__DHX30	0.21	tier1	In-frame	A0 : B1	A0 : B0	validated
BRCA	TCGA.AC.A23C.01A	ARIH2__SLC25A20	0.33	tier1	5UTR-CDS	A0 : B1	A0 : B0	NA
BRCA	TCGA.C8.A134.01A	ARL15__CDC42SE2	1.3	tier3	CDS-5UTR	A0 : B0	A0 : B0	NA
BRCA	TCGA.A7.A4SE.01A	ARMC1__PEX19	0.11	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.C8.A1HN.01A	ARMC1__RB1CC1	0.21	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.A7.A4SE.01A	ARMC1__RP11-574F21.3	0.99	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.EW.A1J2.01A	ARNT2__PDLIM5	1.4	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.AO.A124.01A	ARNTL__TEAD1	0.95	tier1	5UTR-CDS	A0 : B1	A0 : B0	non-validated
BRCA	TCGA.A7.A4SD.01A	ARNTL2__ITPR2	0.52	tier2	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.E9.A1RH.01A	ARPC4-TTLL3__GRM7	0.37	tier1	NA	A0 : B0	A0 : B0	NA
BRCA	TCGA.E2.A155.01A	ARRB1__ANKFN1	3.5	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.A2.A3KC.01A	ARRB1__GAB2	0.017	tier1	Out-of-frame	A0 : B1	A0 : B0	non-validated
BRCA	TCGA.A7.A6VV.01A	ARRB1__GDPD5	0.14	tier1	CDS-5UTR	A0 : B0	A0 : B0	NA
BRCA	TCGA.B6.A3ZX.01A	ARRB1__GDPD5	0.14	tier1	CDS-5UTR	A0 : B0	A0 : B0	NA
BRCA	TCGA.A2.A04U.01A	ARRB1__PAK1	1.5	tier3	CDS-5UTR	A0 : B0	A0 : B0	NA
BRCA	TCGA.S3.A6ZG.01A	ARRB1__PICALM	5.2	tier1	In-frame	A0 : B1	A0 : B1	NA
BRCA	TCGA.A8.A0A9.01A	ARRB1__RASSF3	0.41	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.A1.A0SM.01A	ARRB1__UVRAG	0.49	tier1	Out-of-frame	A0 : B0	A0 : B0	non-validated
BRCA	TCGA.3C.AALI.01A	ARSG__CDK12	0.3	tier3	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.A8.A09Q.01A	ARSG__CEP112	0.13	tier1	Out-of-frame	A0 : B1	A0 : B0	NA
BRCA	TCGA.D8.A27G.01A	ARSG__TEX2	7.8	tier2	CDS-5UTR	A0 : B0	A0 : B0	NA
BRCA	TCGA.C8.A27A.01A	ASAP1__CLVS1	0.78	tier1	In-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.B6.A0X1.01A	ASAP1__KCNH1	0.67	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.AR.A1AH.01A	ASB1__TRAF3IP1	3.7	tier2	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.A8.A07O.01A	ASCC1__MICU1	0.006	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.E9.A1RB.01A	ASCC1__MICU1	0.006	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.OL.A66I.01A	ASCC1__MICU1	0.006	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.A8.A06T.01A	ASCC3__ATL1	0.83	tier2	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.AN.A0AM.01A	ASCC3__GRIK2	0.41	tier1	In-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.A8.A07I.01A	ASH1L__AIM2	0.65	tier1	5UTR-5UTR	A0 : B0	A0 : B0	non-validated
BRCA	TCGA.A7.A26G.01A	ASH1L__ARHGEF2	0.54	tier1	CDS-5UTR	A0 : B0	A0 : B0	non-validated
BRCA	TCGA.AR.A0TT.01A	ASH1L__FAM78B	0.016	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.A8.A090.01A	ASH1L__GATAD2B	0.92	tier1	CDS-5UTR	A1 : B0	A1 : B0	NA
BRCA	TCGA.AN.A0XV.01A	ASH1L__GPATCH4	0.24	tier3	CDS-5UTR	A0 : B0	A0 : B0	NA
BRCA	TCGA.E2.A15A.01A	ASH2L__C20orf72	0.067	tier2	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.E2.A15A.06A	ASH2L__C20orf72	0.067	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.LL.A7T0.01A	ASH2L__ZFYVE28	0.12	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.A2.A3KD.01A	ASPH__RSF1	0.18	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.D8.A140.01A	ASPSCR1__COL5A3	0.13	tier1	Out-of-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.A8.A0A4.01A	ASS1__NCS1	1.2	tier2	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.A2.A0EW.01A	ASTN2__C9orf29	2.3	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.B6.A0I9.01A	ASTN2__PNMT	0.056	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.BH.A1FM.01A	ASXL1__PDRG1	0.099	tier1	3UTR-CDS	A0 : B0	A0 : B0	NA
BRCA	TCGA.A7.A13D.01B	ASXL1__TM9SF4	0.083	tier1	CDS-5UTR	A1 : B0	A0 : B0	validated
BRCA	TCGA.BH.A1FD.01A	ASXL1__XKR7	0.21	tier3	Out-of-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.AR.A0U0.01A	ASXL2__FKBP8	0.56	tier1	CDS-5UTR	A1 : B0	A0 : B0	NA
BRCA	TCGA.AR.A24H.01A	ASXL2__HSPH1	0.027	tier1	Out-of-frame	A0 : B1	A0 : B1	NA
BRCA	TCGA.AN.A0FJ.01A	ASXL2__KIF3C	0.14	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.BH.A203.01A	ATAD2__FAM178B	2.0	tier3	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.E9.A243.01A	ATAD2__PODXL	0.34	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.OL.A66I.01A	ATAD2__RAD51B	0.042	tier2	Out-of-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.LL.A740.01A	ATAD2B__ITSN2	0.15	tier2	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.E9.A229.01A	ATE1__ZRANB1	0.002	tier1	In-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.EW.A1PH.01A	ATF6__SH2D1B	0.19	tier1	In-frame	A0 : B0	A0 : B0	non-validated
BRCA	TCGA.OL.A66P.01A	ATF7__ATP5G2	0.12	tier1	In-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.C8.A12Z.01A	ATF7__SPATS2	0.23	tier1	In-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.A8.A09D.01A	ATG13__TSPAN18	0.71	tier1	5UTR-5UTR	A0 : B0	A0 : B0	NA
BRCA	TCGA.E9.A1RH.01A	ATG14__C14orf33	0.25	tier1	CDS-5UTR	A1 : B0	A0 : B0	NA
BRCA	TCGA.AN.A04C.01A	ATG5__QRSL1	0.47	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.AR.A1AU.01A	ATG5__TMEM200A	0.047	tier1	5UTR-5UTR	A0 : B0	A0 : B0	NA
BRCA	TCGA.E2.A14N.01A	ATL2__DHX57	0.041	tier1	Out-of-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.GI.A2C9.01A	ATL2__DHX57	0.041	tier3	Out-of-frame	A1 : B0	A0 : B0	non-validated
BRCA	TCGA.A8.A07R.01A	ATL2__HNRPLL	0.43	tier1	In-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.D8.A143.01A	ATP11A__TUBGCP3	0.35	tier1	In-frame	A0 : B1	A0 : B0	NA
BRCA	TCGA.E2.A1LI.01A	ATP11B__MED10	0.3	tier1	In-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.E2.A1II.01A	ATP11C__PREX1	0.48	tier1	Out-of-frame	A0 : B1	A0 : B0	NA
BRCA	TCGA.A2.A0ST.01A	ATP1A1__NOTCH2	5.3	tier1	Out-of-frame	A1 : B0	A1 : B0	NA
BRCA	TCGA.AR.A1AM.01A	ATP1A1__RABEP1	0.72	tier4	NA	A0 : B0	A0 : B0	NA
BRCA	TCGA.E2.A15A.01A	ATP1A1__VANGL1	4.1	tier1	In-frame	A1 : B0	A1 : B0	NA
BRCA	TCGA.A2.A0CT.01A	ATP2A3__FGF3	0.15	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.A2.A0CZ.01A	ATP2B1__IKBIP	0.066	tier3	Out-of-frame	A1 : B1	A0 : B0	NA
BRCA	TCGA.E9.A5UO.01A	ATP2B1__KCNC2	0.12	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.AO.A03L.01A	ATP5B__ANKS1A	1.4	tier4	NA	A0 : B0	A0 : B0	non-validated
BRCA	TCGA.B6.A0I1.01A	ATP6V0A1__ATF6	0.091	tier1	Out-of-frame	A0 : B0	A1 : B0	non-validated
BRCA	TCGA.EW.A1J1.01A	ATP6V0A1__MSI2	0.026	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.A8.A06U.01A	ATP6V1A__OPA1	0.3	tier1	5UTR-CDS	A0 : B1	A0 : B0	NA
BRCA	TCGA.AC.A3OD.01B	ATP6V1H__ST8SIA4	1.1	tier2	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.C8.A1HI.01A	ATP8B4__ATPBD4	0.48	tier3	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.A2.A0CL.01A	ATR__DBR1	0.018	tier2	In-frame	A0 : B0	A1 : B0	NA
BRCA	TCGA.A2.A1FW.01A	ATRN__RNF24	1.0	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.BH.A18K.01A	ATRNL1__ATAD1	0.4	tier3	CDS-5UTR	A0 : B0	A0 : B0	NA
BRCA	TCGA.E9.A5UO.01A	ATXN1__HMGCLL1	0.96	tier1	5UTR-CDS	A0 : B0	A0 : B0	NA
BRCA	TCGA.A8.A0AD.01A	ATXN1__PCTP	0.25	tier1	5UTR-CDS	A0 : B0	A0 : B0	NA
BRCA	TCGA.BH.A0H7.01A	ATXN10__APPL1	2.5	tier1	In-frame	A0 : B1	A0 : B0	NA
BRCA	TCGA.AR.A1AP.01A	ATXN2__CCDC59	1.2	tier2	NA	A0 : B0	A0 : B0	NA
BRCA	TCGA.C8.A132.01A	ATXN2__GIT2	0.92	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.AR.A24R.01A	AURKA__PCK1	0.85	tier1	CDS-5UTR	A1 : B0	A0 : B0	NA
BRCA	TCGA.BH.A1F6.01A	AURKB__MYH10	0.029	tier3	5UTR-CDS	A0 : B1	A0 : B1	NA
BRCA	TCGA.E9.A1NA.01A	AXIN1__IFT140	0.2	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.D8.A140.01A	AXIN1__ITCH	2.9	tier1	CDS-5UTR	A0 : B0	A0 : B0	NA
BRCA	TCGA.A8.A09I.01A	AXIN1__ITFG3	0.42	tier1	5UTR-5UTR	A0 : B0	A0 : B0	non-validated
BRCA	TCGA.BH.A28Q.01A	AZGP1__FAR1	1.5	tier4	NA	A0 : B0	A0 : B0	NA
BRCA	TCGA.E9.A5UO.01A	AZGP1__TYK2	1.1	tier3	NA	A0 : B0	A0 : B0	NA
BRCA	TCGA.BH.A0HB.01A	B3GALTL__MTUS2	2.5	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.AR.A24K.01A	B3GALTL__STK33	1.6	tier1	CDS-5UTR	A0 : B0	A0 : B0	NA
BRCA	TCGA.BH.A6R9.01A	B3GNTL1__CLCN4	0.33	tier4	CDS-5UTR	A0 : B0	A0 : B0	NA
BRCA	TCGA.A2.A0EY.01A	B3GNTL1__LRRC3C	0.52	tier2	Out-of-frame	A0 : B0	A0 : B0	non-validated
BRCA	TCGA.AO.A0J2.01A	B4GALNT3__CCDC77	0.43	tier1	Out-of-frame	A1 : B1	A0 : B0	validated
BRCA	TCGA.AN.A0AM.01A	B4GALNT3__SLCO4A1	0.14	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.LL.A9Q3.01A	B4GALT1__AQP7	0.071	tier4	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.A7.A2KD.01A	B4GALT1__FAM201A	0.012	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.AO.A0JD.01A	B4GALT1__NFX1	2.4	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.BH.A0H9.01A	B4GALT5__GNAS	0.62	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.AO.A12F.01A	B4GALT7__NSD1	1.0	tier1	In-frame	A0 : B1	A0 : B0	NA
BRCA	TCGA.AN.A0AR.01A	BAG2__ZNF451	0.59	tier1	Out-of-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.EW.A1PH.01A	BAG4__NEDD8	100.0	tier1	In-frame	A0 : B0	A0 : B0	non-validated
BRCA	TCGA.EW.A1PH.01A	BAG4__NEDD8-MDP1	100.0	tier1	NA	A0 : B0	A0 : B0	non-validated
BRCA	TCGA.A2.A1G4.01A	BAG4__TP53INP1	0.26	tier1	CDS-5UTR	A0 : B0	A0 : B0	NA
BRCA	TCGA.AC.A2BM.01A	BAG4__ZMAT4	0.39	tier1	CDS-5UTR	A0 : B0	A0 : B0	NA
BRCA	TCGA.AN.A0AL.01A	BAG6__LY6G5C	1.6	tier1	In-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.BH.A0AV.01A	BAI2__SPOCD1	0.063	tier1	Out-of-frame	A0 : B0	A0 : B0	validated
BRCA	TCGA.EW.A2FS.01A	BAX__DHDH	0.18	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.D8.A140.01A	BAZ2A__PRIM1	0.46	tier1	In-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.B6.A0IO.01A	BBS4__TTC23	4.2	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.GM.A2DH.01A	BBX__RB1	0.44	tier1	5UTR-CDS	A0 : B1	A0 : B1	NA
BRCA	TCGA.A7.A5ZV.01A	BCAR3__ODF3L2	0.18	tier1	Out-of-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.EW.A1OX.01A	BCAS3__ABCA8	0.74	tier1	In-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.B6.A0IN.01A	BCAS3__APPBP2	0.24	tier1	Out-of-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.AN.A0FD.01A	BCAS3__AXIN2	1.9	tier2	CDS-5UTR	A1 : B0	A0 : B0	NA
BRCA	TCGA.C8.A12P.01A	BCAS3__BRIP1	0.17	tier1	In-frame	A1 : B1	A0 : B0	NA
BRCA	TCGA.AR.A0TQ.01A	BCAS3__CYTH1	0.43	tier1	In-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.A2.A1FW.01A	BCAS3__DISP1	0.61	tier2	CDS-5UTR	A1 : B0	A0 : B0	NA
BRCA	TCGA.E2.A14P.01A	BCAS3__GH2	0.14	tier3	In-frame	A0 : B0	A0 : B0	non-validated
BRCA	TCGA.AN.A0XW.01A	BCAS3__GRIK2	0.63	tier1	In-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.A2.A0CZ.01A	BCAS3__HEATR6	0.14	tier3	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.AR.A250.01A	BCAS3__KAT7	0.042	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.A1.A0SJ.01A	BCAS3__NFS1	1.2	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.AN.A0XW.01A	BCAS3__POLD4	0.033	tier1	In-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.A8.A09G.01A	BCAS3__PRKAA2	4.2	tier1	Out-of-frame	A1 : B1	A0 : B0	NA
BRCA	TCGA.A8.A09I.01A	BCAS3__RAD51C	2.1	tier1	In-frame	A0 : B0	A0 : B0	non-validated
BRCA	TCGA.AN.A0XW.01A	BCAS3__RAD51C	2.1	tier1	Out-of-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.BH.A18R.01A	BCAS3__RNF169	0.29	tier1	In-frame	A1 : B0	A0 : B0	non-validated
BRCA	TCGA.BH.A18R.01A	BCAS3__SHANK2	0.095	tier1	Out-of-frame	A1 : B1	A0 : B0	non-validated
BRCA	TCGA.UL.AAZ6.01A	BCAS3__TANC2	0.43	tier4	In-frame	A1 : B1	A0 : B0	NA
BRCA	TCGA.A8.A08J.01A	BCAS3__VMP1	0.97	tier1	In-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.E9.A1NA.01A	BCAS3__WIPI1	3.0	tier1	Out-of-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.A8.A07W.01A	BCAS4__PTPN1	0.17	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.A2.A04U.01A	BCAT1__ITPR2	0.9	tier1	In-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.E2.A1LL.01A	BCAT1__RECQL	1.1	tier2	CDS-5UTR	A1 : B0	A0 : B0	non-validated
BRCA	TCGA.B6.A0RS.01A	BCL2L11__ACOXL	1.2	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.BH.A18Q.01A	BCL2L11__AFMID	0.78	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.A7.A13D.01A	BCL2L14__ETV6	1.9	tier1	In-frame	A0 : B0	A0 : B0	non-validated
BRCA	TCGA.EW.A6SB.01A	BCL2L14__ETV6	1.9	tier1	In-frame	A0 : B1	A0 : B0	NA
BRCA	TCGA.AR.A0U4.01A	BCL3__ATP9B	0.09	tier2	Out-of-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.AR.A2LR.01A	BCL3__IGSF23	0.86	tier2	Out-of-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.AO.A03U.01B	BCL7A__KCNIP3	0.65	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.S3.AA0Z.01A	BCL7C__OTOA	0.26	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.BH.A18V.01A	BCL7C__ZNF720	100.0	tier2	CDS-5UTR	A0 : B0	A0 : B0	NA
BRCA	TCGA.A7.A4SF.01A	BCL9__IVL	0.14	tier1	5UTR-5UTR	A0 : B0	A0 : B0	NA
BRCA	TCGA.A7.A4SF.01A	BCL9__SMCP	0.049	tier3	5UTR-5UTR	A0 : B0	A0 : B0	NA
BRCA	TCGA.D8.A1JM.01A	BCLAF1__MAP7	0.29	tier1	5UTR-CDS	A0 : B0	A0 : B0	NA
BRCA	TCGA.C8.A27A.01A	BCR__MOV10L1	0.29	tier3	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.C8.A12Q.01A	BCR__MRVI1	0.13	tier1	In-frame	A0 : B1	A0 : B0	non-validated
BRCA	TCGA.A2.A0SW.01A	BDP1__CWC27	0.019	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.E2.A1BD.01A	BGN__KIAA2026	7.3	tier3	3UTR-CDS	A0 : B0	A0 : B0	NA
BRCA	TCGA.E2.A1L9.01A	BGN__ZNF827	0.18	tier3	3UTR-5UTR	A0 : B0	A0 : B0	NA
BRCA	TCGA.E9.A22E.01A	BIN3__PEBP4	100.0	tier2	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.LL.A7SZ.01A	BIRC6__ABCC11	2.7	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.LL.A7SZ.01A	BIRC6__FAM82A1	0.37	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.S3.A6ZF.01A	BLNK__PIK3AP1	0.3	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.A8.A08I.01A	BLNK__ZNF536	3.8	tier1	In-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.AR.A0TT.01A	BLZF1__BRP44	0.017	tier2	In-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.A2.A0ET.01A	BMPR1B__MCC	0.13	tier1	5UTR-CDS	A0 : B0	A0 : B0	NA
BRCA	TCGA.AN.A0FZ.01A	BMS1__PLEKHA7	0.72	tier1	Out-of-frame	A0 : B1	A0 : B0	NA
BRCA	TCGA.A8.A084.01A	BOK__MYEOV2	0.086	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.BH.A0E0.01A	BOP1__CYHR1	0.012	tier1	CDS-5UTR	A1 : B0	A1 : B0	non-validated
BRCA	TCGA.E2.A14V.01A	BPIFB1__SNAPC5	100.0	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.D8.A27N.01A	BPTF__ABCC3	2.1	tier1	Out-of-frame	A1 : B0	A1 : B0	NA
BRCA	TCGA.E2.A15H.01A	BPTF__CCDC40	1.7	tier1	Out-of-frame	A0 : B1	A0 : B0	non-validated
BRCA	TCGA.E2.A14V.01A	BPTF__FAM117A	0.95	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.C8.A12P.01A	BPTF__PIP4K2B	0.19	tier1	Out-of-frame	A1 : B1	A1 : B0	NA
BRCA	TCGA.B6.A0I9.01A	BPTF__PITPNC1	0.85	tier1	Out-of-frame	A1 : B0	A1 : B0	NA
BRCA	TCGA.BH.A1F6.01A	BPTF__PITPNC1	0.85	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.GI.A2C9.01A	BPTF__PITPNC1	0.85	tier1	In-frame	A0 : B0	A0 : B0	non-validated
BRCA	TCGA.3C.AALI.01A	BPTF__PLXDC1	0.059	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.E9.A22D.01A	BPTF__RGS9	0.083	tier1	In-frame	A1 : B0	A1 : B0	NA
BRCA	TCGA.OL.A5D8.01A	BRE__AC013480.1	0.07	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.C8.A134.01A	BRE__PRKCE	1.3	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.E2.A15E.06A	BRE__PTPN1	100.0	tier1	In-frame	A0 : B0	A0 : B0	non-validated
BRCA	TCGA.A8.A08I.01A	BRF1__FOXN3	0.42	tier1	5UTR-5UTR	A0 : B0	A0 : B0	NA
BRCA	TCGA.C8.A275.01A	BRIP1__CUEDC1	1.2	tier2	CDS-5UTR	A0 : B0	A0 : B0	NA
BRCA	TCGA.E2.A1B0.01A	BRPF3__HLA-DMA	2.9	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.AC.A6IW.01A	BRWD1__ABCA10	0.24	tier2	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.E9.A1NF.01A	BRWD1__ABCG1	0.46	tier1	In-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.A2.A0CW.01A	BRWD1__DYRK1A	0.069	tier1	Out-of-frame	A0 : B1	A0 : B0	NA
BRCA	TCGA.A8.A08P.01A	BRWD1__LCA5L	0.34	tier1	CDS-5UTR	A0 : B0	A0 : B0	NA
BRCA	TCGA.A8.A09Q.01A	BRWD1__WDR4	0.98	tier3	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.C8.A26X.01A	BSDC1__YARS	0.15	tier1	In-frame	A1 : B1	A0 : B1	NA
BRCA	TCGA.LL.A5YO.01A	BSPRY__NPM1	0.042	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.BH.A0BP.01A	BTBD1__MESP1	0.28	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.EW.A1PF.01A	BTBD3__GCNT2	2.9	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.AC.A23H.01A	BTBD7__UBR7	0.091	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.A2.A0YJ.01A	BTBD9__ATAD1	1.4	tier1	CDS-5UTR	A0 : B0	A0 : B0	NA
BRCA	TCGA.AN.A0FT.01A	BTBD9__C6orf127	0.051	tier2	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.A8.A0AD.01A	BTBD9__FARS2	0.046	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.D8.A13Z.01A	BTN2A1__HIST1H2AC	2.2	tier1	CDS-3UTR	A0 : B0	A0 : B0	NA
BRCA	TCGA.E2.A109.01A	BTN3A2__HIST1H2AC	0.17	tier1	3UTR-3UTR	A0 : B0	A0 : B0	non-validated
BRCA	TCGA.BH.A18U.01A	BTRC__CDH23	0.2	tier2	Out-of-frame	A0 : B0	A0 : B0	non-validated
BRCA	TCGA.AO.A128.01A	BUB1B__EIF2AK4	0.061	tier3	Out-of-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.D8.A1XT.01A	BUB1B__EIF2AK4	0.061	tier1	Out-of-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.OL.A66I.01A	BUB1B__EIF2AK4	0.061	tier4	In-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.D8.A1JG.01B	BUD13__APOA5	0.52	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.A8.A09N.01A	C10orf11__ADK	100.0	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.AO.A03P.01A	C10orf11__CYP2C19	100.0	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.LD.A7W5.01A	C10orf11__RUFY2	1.9	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.AC.A8OQ.01A	C10orf18__ABI1	0.094	tier1	5UTR-CDS	A0 : B1	A0 : B0	NA
BRCA	TCGA.C8.A12K.01A	C10orf18__NET1	0.086	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.E9.A248.01A	C10orf18__NET1	0.086	tier1	Out-of-frame	A0 : B1	A0 : B0	NA
BRCA	TCGA.AO.A1KT.01A	C10orf26__ADAMTS2	0.28	tier1	In-frame	A0 : B1	A0 : B0	NA
BRCA	TCGA.AR.A1AO.01A	C10orf26__ARL3	0.51	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.D8.A1JK.01A	C10orf46__EIF3A	4.6	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.E2.A106.01A	C10orf57__CREB3L3	0.19	tier4	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.A7.A0DB.01C	C10orf68__CCDC7	0.11	tier1	5UTR-CDS	A0 : B1	A0 : B0	NA
BRCA	TCGA.A7.A0DC.01B	C10orf68__CCDC7	0.11	tier1	5UTR-CDS	A0 : B1	A0 : B0	NA
BRCA	TCGA.A7.A13D.01B	C10orf68__CCDC7	0.11	tier1	5UTR-CDS	A0 : B1	A0 : B0	non-validated
BRCA	TCGA.A7.A13E.01A	C10orf68__CCDC7	0.11	tier1	5UTR-CDS	A0 : B1	A0 : B0	NA
BRCA	TCGA.A7.A13G.01B	C10orf68__CCDC7	0.11	tier1	5UTR-CDS	A0 : B1	A0 : B0	NA
BRCA	TCGA.A7.A26E.01A	C10orf68__CCDC7	0.11	tier1	5UTR-CDS	A0 : B1	A0 : B0	NA
BRCA	TCGA.A7.A26I.01B	C10orf68__CCDC7	0.11	tier1	5UTR-CDS	A0 : B1	A0 : B0	NA
BRCA	TCGA.A7.A26J.01B	C10orf68__CCDC7	0.11	tier1	5UTR-CDS	A0 : B1	A0 : B0	non-validated
BRCA	TCGA.AC.A2QH.01B	C10orf68__CCDC7	0.11	tier1	5UTR-CDS	A0 : B1	A0 : B0	NA
BRCA	TCGA.AC.A3OD.01B	C10orf68__CCDC7	0.11	tier1	5UTR-CDS	A0 : B1	A0 : B0	NA
BRCA	TCGA.AC.A3QQ.01A	C10orf68__CCDC7	0.11	tier1	5UTR-CDS	A0 : B1	A0 : B0	NA
BRCA	TCGA.A8.A091.01A	C11orf30__BBS9	0.98	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.LD.A7W6.01A	C11orf30__LRP5	100.0	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.XX.A899.01A	C11orf30__SHANK2	0.004	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.A2.A0ES.01A	C11orf30__UVRAG	1.0	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.LL.A6FQ.01A	C11orf49__PPME1	0.052	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.A7.A4SA.01A	C11orf57__DLAT	0.17	tier1	Out-of-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.BH.A18T.01A	C11orf80__BBS1	0.99	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.C8.A8HQ.01A	C11orf80__PPP6R3	5.2	tier2	CDS-5UTR	A0 : B0	A0 : B0	NA
BRCA	TCGA.EW.A3U0.01A	C12orf23__RFX4	0.14	tier2	In-frame	A0 : B1	A0 : B0	validated
BRCA	TCGA.C8.A1HO.01A	C12orf51__SBNO1	1.7	tier3	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.C8.A12M.01A	C12orf51__SRRM4	0.11	tier1	Out-of-frame	A0 : B1	A0 : B0	NA
BRCA	TCGA.BH.A0B6.01A	C14orf43__ACOT1	0.14	tier1	5UTR-CDS	A0 : B0	A0 : B0	NA
BRCA	TCGA.A2.A0EW.01A	C14orf45__RGS6	0.34	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.A8.A07C.01A	C14orf45__RP5-1021I20.4	0.15	tier3	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.BH.A0E6.01A	C15orf41__FAM98B	0.4	tier2	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.C8.A27A.01A	C15orf41__LYSMD4	100.0	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.B6.A0IO.01A	C15orf42__ATXN7L1	1.3	tier2	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.A8.A0AD.01A	C16orf45__POMT2	1.3	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.AO.A126.01A	C16orf45__RHBDL2	0.59	tier1	CDS-5UTR	A0 : B0	A0 : B0	NA
BRCA	TCGA.B6.A0RS.01A	C16orf55__DPEP1	0.14	tier1	CDS-5UTR	A0 : B0	A0 : B0	NA
BRCA	TCGA.AR.A0TX.01A	C16orf62__ABCC6P1	0.69	tier2	In-frame	A0 : B0	A0 : B0	non-validated
BRCA	TCGA.AR.A256.01A	C16orf62__TMC5	2.2	tier4	Out-of-frame	A0 : B0	A0 : B0	validated
BRCA	TCGA.A7.A425.01A	C16orf87__ATXN2	0.25	tier2	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.LD.A7W5.01A	C17orf39__FDXR	1.1	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.B6.A0I1.01A	C17orf57__MYL4	100.0	tier1	CDS-5UTR	A0 : B0	A0 : B0	non-validated
BRCA	TCGA.OL.A5RZ.01A	C17orf63__DOPEY2	0.33	tier2	5UTR-5UTR	A0 : B0	A0 : B0	NA
BRCA	TCGA.C8.A275.01A	C17orf63__GIP	1.3	tier2	CDS-5UTR	A0 : B0	A0 : B0	NA
BRCA	TCGA.GI.A2C9.01A	C17orf63__PHF12	0.017	tier1	5UTR-CDS	A0 : B1	A0 : B0	validated
BRCA	TCGA.A8.A09I.01A	C17orf75__TOP2A	0.33	tier1	Out-of-frame	A0 : B1	A0 : B1	validated
BRCA	TCGA.AR.A2LJ.01A	C17orf76__PEMT	1.2	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.LL.A5YP.01A	C17orf85__CAMKK1	1.7	tier1	5UTR-CDS	A0 : B0	A0 : B0	NA
BRCA	TCGA.UL.AAZ6.01A	C18orf1__C18orf19	0.003	tier4	CDS-5UTR	A0 : B0	A0 : B0	NA
BRCA	TCGA.A2.A3XX.01A	C19orf2__IL29	0.93	tier4	5UTR-CDS	A0 : B0	A0 : B0	non-validated
BRCA	TCGA.AN.A0XT.01A	C19orf20__PRKACA	1.3	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.A2.A0EY.01A	C19orf25__MED1	1.6	tier1	In-frame	A0 : B0	A0 : B0	non-validated
BRCA	TCGA.E9.A1RF.01A	C19orf55__IGFLR1	0.31	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.OL.A66I.01A	C19orf6__CCDC25	0.35	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.A8.A08I.01A	C19orf63__MBOAT7	0.052	tier1	CDS-5UTR	A0 : B0	A0 : B0	NA
BRCA	TCGA.B6.A409.01A	C1orf123__ALG6	0.45	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.AR.A1AT.01A	C1orf132__GRIK3	0.65	tier1	NA	A0 : B0	A0 : B0	NA
BRCA	TCGA.AN.A0FT.01A	C1orf132__PROX1	0.56	tier2	NA	A0 : B0	A0 : B0	NA
BRCA	TCGA.EW.A1PB.01A	C1orf132__RPS6KB1	1.3	tier2	NA	A0 : B0	A0 : B0	non-validated
BRCA	TCGA.A2.A25F.01A	C1orf135__PADI1	1.0	tier3	Out-of-frame	A0 : B1	A0 : B0	NA
BRCA	TCGA.BH.A0BW.01A	C1orf198__GXYLT2	0.45	tier1	5UTR-CDS	A0 : B0	A0 : B0	non-validated
BRCA	TCGA.A2.A0T2.01A	C1orf9__C1orf105	0.72	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.C8.A278.01A	C1orf9__DARS2	2.6	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.A8.A07U.01A	C1orf9__DNM3	0.46	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.OL.A5D7.01A	C1orf9__ZCWPW2	1.3	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.A8.A08L.01A	C20orf112__COMMD7	0.41	tier1	Out-of-frame	A0 : B0	A0 : B0	non-validated
BRCA	TCGA.E9.A5UP.01A	C20orf112__COMMD7	0.41	tier1	5UTR-CDS	A0 : B0	A0 : B0	NA
BRCA	TCGA.AR.A254.01A	C20orf177__PRPF6	1.9	tier1	5UTR-CDS	A0 : B0	A0 : B0	NA
BRCA	TCGA.E2.A1IH.01A	C20orf177__SLC13A2	1.7	tier2	5UTR-5UTR	A0 : B0	A0 : B0	NA
BRCA	TCGA.AR.A1AO.01A	C20orf194__CEACAM16	1.3	tier3	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.A2.A1FW.01A	C20orf194__TDRD10	0.004	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.E2.A14Z.01A	C20orf196__NCKAP1	1.0	tier3	Out-of-frame	A0 : B1	A0 : B1	NA
BRCA	TCGA.AR.A0U3.01A	C20orf29__RNF24	2.7	tier2	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.C8.A273.01A	C20orf43__PARD6B	0.077	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.BH.A0H7.01A	C20orf43__TSHZ2	1.6	tier1	CDS-3UTR	A0 : B0	A0 : B0	NA
BRCA	TCGA.A8.A09Q.01A	C21orf63__CEP112	0.87	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.BH.A0B9.01A	C21orf63__MRAP	0.86	tier1	Out-of-frame	A0 : B0	A0 : B0	non-validated
BRCA	TCGA.A1.A0SO.01A	C2CD2__ZNF295	0.011	tier4	CDS-5UTR	A0 : B0	A0 : B0	NA
BRCA	TCGA.A8.A091.01A	C2CD3__ABCA13	1.3	tier1	Out-of-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.A7.A4SB.01A	C2CD3__ODZ4	0.086	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.E2.A109.01A	C2CD3__P2RY6	0.051	tier1	CDS-5UTR	A1 : B0	A0 : B0	validated
BRCA	TCGA.AR.A1AV.01A	C2CD3__RNF169	0.58	tier1	In-frame	A1 : B1	A0 : B0	NA
BRCA	TCGA.D8.A27M.01A	C2orf67__ERBB4	0.19	tier2	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.BH.A0HY.01A	C3orf26__XRRA1	0.84	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.E9.A1ND.01A	C3orf52__GCET2	0.022	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.E2.A1L7.01A	C3orf70__TPRG1	1.2	tier1	CDS-5UTR	A0 : B0	A0 : B0	NA
BRCA	TCGA.AO.A03L.01A	C4orf14__N4BP1	0.25	tier2	In-frame	A0 : B0	A0 : B0	non-validated
BRCA	TCGA.AO.A12D.01A	C4orf14__PPP3CA	0.047	tier2	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.A2.A04Q.01A	C5orf42__NUP155	0.94	tier3	Out-of-frame	A1 : B0	A0 : B0	non-validated
BRCA	TCGA.BH.A8FZ.01A	C5orf42__NUP155	0.94	tier1	In-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.BH.A1FE.01A	C6orf203__BEND3	4.4	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.A7.A26G.01A	C7orf10__POU6F2	1.3	tier3	In-frame	A0 : B0	A0 : B0	non-validated
BRCA	TCGA.A2.A04P.01A	C7orf11__TRA2A	100.0	tier1	Out-of-frame	A0 : B0	A0 : B0	non-validated
BRCA	TCGA.AO.A0J5.01A	C7orf44__MRPS24	0.74	tier1	5UTR-CDS	A0 : B0	A0 : B0	NA
BRCA	TCGA.AQ.A04L.01B	C7orf46__MUC4	3.1	tier4	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.AO.A0J4.01A	C8orf76__NKAIN3	1.1	tier4	In-frame	A0 : B0	A0 : B0	non-validated
BRCA	TCGA.AQ.A04J.01A	C8orf83__RAD54B	1.4	tier1	Out-of-frame	A0 : B1	A0 : B0	validated
BRCA	TCGA.A2.A0SX.01A	C9orf150__TYRP1	0.61	tier2	CDS-5UTR	A0 : B0	A0 : B0	NA
BRCA	TCGA.OL.A5DA.01A	C9orf174__NDUFA8	0.84	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.C8.A12L.01A	C9orf3__PTPDC1	0.14	tier2	CDS-5UTR	A0 : B0	A0 : B0	non-validated
BRCA	TCGA.AR.A0U4.01A	C9orf5__C9orf4	0.13	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.BH.A0AV.01A	CA13__RBKS	3.3	tier1	Out-of-frame	A0 : B0	A0 : B0	non-validated
BRCA	TCGA.AR.A256.01A	CA3__MYBL1	3.9	tier2	In-frame	A0 : B0	A0 : B0	validated
BRCA	TCGA.S3.AA12.01A	CABLES1__FTO	0.6	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.A1.A0SN.01A	CABLES1__RBBP8	0.58	tier4	Out-of-frame	A0 : B1	A0 : B0	NA
BRCA	TCGA.A8.A08R.01A	CABLES1__RBBP8	0.58	tier3	In-frame	A0 : B1	A0 : B0	NA
BRCA	TCGA.BH.A1FC.01A	CACHD1__CLIC4	0.82	tier2	In-frame	A0 : B1	A0 : B0	validated
BRCA	TCGA.BH.A1FE.01A	CACNA1A__ZNF44	1.0	tier2	CDS-3UTR	A0 : B0	A0 : B0	NA
BRCA	TCGA.AN.A0FX.01A	CACNA1C__WNT5B	1.1	tier1	CDS-5UTR	A1 : B0	A0 : B0	NA
BRCA	TCGA.GM.A2DD.01A	CACNA1D__PRKCD	0.22	tier1	In-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.D8.A1JM.01A	CACNA1I__TAB1	0.027	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.A2.A0CX.01A	CACNA2D3__FOXP1	0.93	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.BH.A1EN.01A	CACNB1__C11orf30	0.068	tier1	Out-of-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.AR.A0TX.01A	CACNB1__CDC6	0.11	tier2	CDS-5UTR	A1 : B0	A0 : B0	non-validated
BRCA	TCGA.AC.A8OQ.01A	CACNB1__FBXL20	0.36	tier2	In-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.AR.A0TX.01A	CACNB1__MLLT6	0.022	tier1	Out-of-frame	A0 : B0	A0 : B0	non-validated
BRCA	TCGA.UL.AAZ6.01A	CACNB1__TANC2	0.12	tier1	Out-of-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.A2.A0EY.01A	CACNG4__C17orf51	0.023	tier2	In-frame	A0 : B0	A0 : B0	validated
BRCA	TCGA.C8.A12M.01A	CACNG4__VMP1	0.91	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.C8.A26V.01A	CADM2__FHIT	0.018	tier1	CDS-5UTR	A0 : B0	A0 : B0	NA
BRCA	TCGA.E9.A22E.01A	CADPS__FHIT	1.1	tier4	In-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.D8.A1JI.01A	CADPS2__DHCR7	0.58	tier2	CDS-5UTR	A1 : B0	A0 : B0	NA
BRCA	TCGA.A1.A0SN.01A	CADPS2__LMOD2	1.8	tier2	In-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.E9.A244.01A	CALD1__LRGUK	0.51	tier1	5UTR-CDS	A0 : B0	A0 : B0	NA
BRCA	TCGA.D8.A1JK.01A	CAMK1D__C10orf47	0.023	tier1	CDS-5UTR	A1 : B0	A0 : B0	NA
BRCA	TCGA.OL.A6VO.01A	CAMK1D__FAM188A	2.5	tier1	Out-of-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.A8.A09D.01A	CAMK1D__TSPAN18	0.35	tier1	CDS-5UTR	A0 : B0	A0 : B0	NA
BRCA	TCGA.AC.A2BK.01A	CAMSAP1L1__BCAR3	0.84	tier3	CDS-5UTR	A0 : B0	A0 : B0	non-validated
BRCA	TCGA.D8.A1JK.01A	CAMTA1__THAP3	0.48	tier2	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.AN.A0AM.01A	CAND1__TUSC5	0.41	tier1	Out-of-frame	A1 : B0	A1 : B0	NA
BRCA	TCGA.C8.A12M.01A	CANT1__FBXL20	0.11	tier1	5UTR-CDS	A0 : B0	A0 : B0	NA
BRCA	TCGA.C8.A135.01A	CANT1__PSMD3	0.27	tier1	5UTR-CDS	A0 : B1	A0 : B1	NA
BRCA	TCGA.E2.A14N.01A	CAPN6__DCX	1.2	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.BH.A0E2.01A	CAPRIN1__COMMD9	0.021	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.D8.A13Y.01A	CAPRIN2__AMN1	0.34	tier1	CDS-5UTR	A0 : B0	A0 : B0	NA
BRCA	TCGA.AR.A1AN.01A	CAPZA2__MET	0.16	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.E2.A573.01A	CAPZB__SCEL	0.065	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.A8.A097.01A	CARD8__BCKDHA	0.11	tier1	Out-of-frame	A0 : B1	A0 : B0	NA
BRCA	TCGA.E9.A228.01A	CASC3__MED1	0.29	tier1	Out-of-frame	A1 : B1	A0 : B0	NA
BRCA	TCGA.A2.A1G1.01A	CASC3__ZNF254	0.69	tier1	CDS-5UTR	A1 : B0	A0 : B0	NA
BRCA	TCGA.BH.A0E6.01A	CASC4__TGM5	0.003	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.A8.A08L.01A	CASK__EYA2	0.019	tier1	CDS-5UTR	A1 : B0	A0 : B0	non-validated
BRCA	TCGA.E2.A14T.01A	CASK__GLIPR1L1	1.2	tier1	Out-of-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.BH.A18T.01A	CASP8__ALS2CR12	0.06	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.A2.A0SV.01A	CAST__FAM172A	0.058	tier1	5UTR-CDS	A0 : B1	A0 : B0	NA
BRCA	TCGA.JL.A3YW.01A	CATSPERB__ATXN3	3.1	tier1	NA	A0 : B0	A0 : B0	NA
BRCA	TCGA.EW.A1P1.01A	CATSPERB__FBLN5	1.1	tier3	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.A7.A13G.01A	CATSPERB__TC2N	0.66	tier1	NA	A0 : B0	A0 : B0	NA
BRCA	TCGA.AC.A3QQ.01A	CATSPERB__TC2N	0.66	tier4	NA	A0 : B0	A0 : B0	NA
BRCA	TCGA.BH.A0EE.01A	CATSPERB__TRIP11	0.37	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.GM.A2DD.01A	CBL__PHLDB1	0.05	tier3	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.D8.A1XZ.01A	CBX1__SSH2	0.005	tier1	5UTR-CDS	A0 : B0	A0 : B0	NA
BRCA	TCGA.A2.A0CW.01A	CBX3__GARS	0.2	tier1	5UTR-CDS	A0 : B0	A0 : B0	NA
BRCA	TCGA.A8.A09C.01A	CBX4__EFCAB5	1.7	tier1	Out-of-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.A1.A0SQ.01A	CCDC106__CD37	1.4	tier2	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.AO.A0J2.01A	CCDC109B__C4BPA	100.0	tier2	Out-of-frame	A0 : B0	A0 : B0	non-validated
BRCA	TCGA.E2.A150.01A	CCDC129__DEFB118	0.65	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.AO.A12E.01A	CCDC132__CDH1	2.2	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.C8.A12U.01A	CCDC138__GFRAL	0.56	tier2	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.E2.A15F.01A	CCDC14__ADAM19	0.15	tier3	In-frame	A1 : B0	A1 : B0	NA
BRCA	TCGA.C8.A1HO.01A	CCDC148__WDSUB1	0.21	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.S3.A6ZF.01A	CCDC149__GABRB1	0.42	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.3C.AAAU.01A	CCDC158__MSRB3	2.0	tier2	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.BH.A0H9.01A	CCDC165__DLGAP1	0.11	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.A2.A0CZ.01A	CCDC41__LIN7A	0.69	tier1	5UTR-CDS	A0 : B0	A0 : B0	NA
BRCA	TCGA.D8.A140.01A	CCDC6__ANK3	0.072	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.EW.A1P4.01A	CCDC6__ANK3	0.072	tier1	CDS-3UTR	A0 : B0	A0 : B0	NA
BRCA	TCGA.AO.A0J6.01A	CCDC6__UBE2D1	0.32	tier3	In-frame	A1 : B0	A0 : B0	non-validated
BRCA	TCGA.EW.A6S9.01A	CCDC61__FUT2	0.7	tier1	CDS-5UTR	A0 : B0	A0 : B0	NA
BRCA	TCGA.B6.A0RH.01A	CCDC64__GALNT9	0.91	tier1	CDS-5UTR	A0 : B0	A0 : B0	NA
BRCA	TCGA.GM.A3NY.01A	CCDC66__FLNB	1.1	tier2	Out-of-frame	A0 : B1	A0 : B1	NA
BRCA	TCGA.E9.A3QA.01A	CCDC90A__S100A10	0.052	tier2	CDS-5UTR	A0 : B0	A0 : B0	NA
BRCA	TCGA.AR.A1AH.01A	CCDC91__LYRM5	1.3	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.OL.A66P.01A	CCM2__C7orf10	0.6	tier1	Out-of-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.AR.A1AI.01A	CCND3__GUCA1B	1.1	tier1	5UTR-CDS	A0 : B0	A0 : B0	NA
BRCA	TCGA.BH.A1FM.01A	CCNK__C9orf93	0.067	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.AC.A8OR.01A	CCNL2__RP4-758J18.6	0.81	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.AR.A2LR.01A	CCNY__AKAP10	0.55	tier1	In-frame	A1 : B1	A0 : B0	NA
BRCA	TCGA.AR.A256.01A	CCNY__DENND1A	0.2	tier1	Out-of-frame	A1 : B0	A0 : B0	validated
BRCA	TCGA.B6.A0I8.01A	CCNY__ZNF496	0.22	tier1	In-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.E9.A22B.01A	CCT2__CXCR5	1.2	tier3	3UTR-5UTR	A0 : B0	A0 : B0	NA
BRCA	TCGA.AO.A0J3.01A	CCT3__SYT2	2.0	tier1	CDS-5UTR	A1 : B0	A1 : B0	NA
BRCA	TCGA.EW.A6SA.01A	CCT8__LHX4	0.13	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.D8.A27M.01A	CD151__EFCAB4A	0.032	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.E2.A1LE.01A	CD276__PARP16	1.2	tier1	5UTR-CDS	A0 : B0	A0 : B0	NA
BRCA	TCGA.OL.A6VO.01A	CD2AP__MUTED	0.15	tier1	Out-of-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.AN.A0AT.01A	CD302__ALPL	0.34	tier1	CDS-5UTR	A0 : B0	A0 : B0	validated
BRCA	TCGA.A7.A13D.01B	CD59__FBXO3	0.041	tier1	In-frame	A0 : B0	A0 : B0	validated
BRCA	TCGA.BH.A1FD.01A	CD83__LAMA2	0.07	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.GI.A2C9.01A	CD99L2__ARHGAP36	0.4	tier1	In-frame	A0 : B0	A0 : B0	non-validated
BRCA	TCGA.S3.A6ZF.01A	CD99L2__CXorf66	2.0	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.A1.A0SH.01A	CDC27__ST7L	0.077	tier4	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.E9.A228.01A	CDC27__USP32	0.42	tier1	In-frame	A0 : B1	A1 : B0	NA
BRCA	TCGA.E2.A1LK.01A	CDC42BPA__EPRS	2.0	tier1	In-frame	A0 : B0	A0 : B0	non-validated
BRCA	TCGA.A1.A0SO.01A	CDC42BPB__KIAA1409	2.2	tier2	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.A8.A0AD.01A	CDC42EP4__NEUROD2	0.34	tier2	5UTR-5UTR	A0 : B0	A0 : B0	NA
BRCA	TCGA.A2.A0YE.01A	CDC42EP4__SDK2	0.008	tier1	5UTR-CDS	A0 : B0	A0 : B0	NA
BRCA	TCGA.AN.A04A.01A	CDC42EP4__SDK2	0.008	tier1	5UTR-CDS	A0 : B0	A0 : B0	NA
BRCA	TCGA.AC.A5XU.01A	CDC42EP5__CYTH1	0.35	tier2	5UTR-CDS	A0 : B0	A0 : B0	NA
BRCA	TCGA.A2.A1FW.01A	CDC42SE1__TNKS	0.31	tier1	5UTR-CDS	A0 : B0	A0 : B0	NA
BRCA	TCGA.A8.A09Q.01A	CDC5L__PITPNC1	1.7	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.C8.A12L.01A	CDC5L__SPATS1	1.1	tier1	In-frame	A0 : B0	A0 : B0	validated
BRCA	TCGA.E2.A15H.01A	CDC6__RNFT1	2.8	tier1	Out-of-frame	A0 : B0	A0 : B0	non-validated
BRCA	TCGA.LL.A440.01A	CDCA2__ADAM28	0.94	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.AO.A12E.01A	CDH1__CCDC132	2.2	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.B6.A0RN.01A	CDH1__DEXI	0.27	tier1	CDS-3UTR	A1 : B0	A0 : B0	NA
BRCA	TCGA.AQ.A04L.01B	CDH1__NPFFR2	1.2	tier1	In-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.A2.A4S1.01A	CDH11__PRC1	1.0	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.AC.A2QH.01B	CDH2__KIAA1328	0.75	tier1	Out-of-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.AN.A0FJ.01A	CDH23__NSD1	0.42	tier1	In-frame	A0 : B1	A0 : B0	NA
BRCA	TCGA.EW.A1PA.01A	CDH4__NLRP9	5.0	tier2	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.AC.A62V.01A	CDH4__SLA2	0.027	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.3C.AALI.01A	CDK12__AC103810.1	0.13	tier1	CDS-5UTR	A1 : B0	A0 : B0	NA
BRCA	TCGA.C8.A12M.01A	CDK12__AKAP1	1.2	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.3C.AALI.01A	CDK12__FAM20A	0.36	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.AO.A0JM.01A	CDK12__FBXL20	0.021	tier1	In-frame	A0 : B0	A0 : B0	non-validated
BRCA	TCGA.EW.A6S9.01A	CDK12__JAK2	0.003	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.JL.A3YW.01A	CDK13__C7orf36	0.071	tier3	In-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.E2.A105.01A	CDK13__TAX1BP1	0.75	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.AR.A24Z.01A	CDK19__ZFAND3	0.005	tier1	Out-of-frame	A0 : B0	A0 : B0	non-validated
BRCA	TCGA.E2.A14N.01A	CDK5RAP2__ENG	0.68	tier1	In-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.C8.A27A.01A	CDK5RAP3__RNF43	0.37	tier1	Out-of-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.BH.A1FD.01A	CDK7__CCNB1	1.4	tier4	In-frame	A1 : B1	A0 : B0	NA
BRCA	TCGA.C8.A26W.01A	CDK7__RGS20	1.3	tier3	Out-of-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.A8.A07I.01A	CDK8__IKZF3	1.1	tier1	Out-of-frame	A1 : B0	A0 : B0	validated
BRCA	TCGA.B6.A0RS.01A	CDKAL1__HSP90AA1	0.034	tier2	5UTR-CDS	A0 : B1	A0 : B1	NA
BRCA	TCGA.B6.A0I6.01A	CDKAL1__RBM24	0.31	tier1	Out-of-frame	A0 : B0	A0 : B0	validated
BRCA	TCGA.BH.A0B9.01A	CDV3__TMEM108	0.18	tier1	Out-of-frame	A0 : B0	A0 : B0	validated
BRCA	TCGA.LL.A6FQ.01A	CELF1__LUZP2	1.4	tier2	Out-of-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.EW.A1OW.01A	CELF1__MTCH2	0.71	tier1	NA	A0 : B0	A0 : B0	NA
BRCA	TCGA.E2.A14P.01A	CELSR1__CERK	0.15	tier1	Out-of-frame	A0 : B0	A0 : B0	non-validated
BRCA	TCGA.A2.A25F.01A	CELSR1__MAFF	0.083	tier1	CDS-5UTR	A0 : B0	A0 : B0	NA
BRCA	TCGA.A7.A13D.01A	CELSR2__KIAA1324	0.37	tier1	Out-of-frame	A0 : B0	A0 : B0	non-validated
BRCA	TCGA.BH.A208.01A	CELSR2__SARS	2.5	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.AR.A24Z.01A	CENPF__SUSD4	0.37	tier4	5UTR-CDS	A0 : B0	A0 : B0	non-validated
BRCA	TCGA.PL.A8LZ.01A	CENPO__NCOA1	1.2	tier1	3UTR-CDS	A0 : B0	A0 : B0	NA
BRCA	TCGA.A7.A0CG.01A	CENPO__UBXN2A	100.0	tier3	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.E2.A109.01A	CENPV__FERMT1	0.061	tier1	In-frame	A0 : B1	A0 : B0	non-validated
BRCA	TCGA.E9.A1NA.01A	CEP112__OTOA	1.6	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.D8.A1JL.01A	CEP70__STAG1	0.17	tier1	In-frame	A0 : B1	A0 : B0	NA
BRCA	TCGA.AR.A250.01A	CEP95__RBM11	2.3	tier1	5UTR-CDS	A0 : B0	A0 : B0	NA
BRCA	TCGA.BH.A0H7.01A	CERK__SLC25A17	1.3	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.AC.A5XU.01A	CERS4__SPAG17	1.5	tier2	5UTR-CDS	A0 : B0	A0 : B0	NA
BRCA	TCGA.E2.A1LL.01A	CERS5__SAMD11	0.85	tier1	Out-of-frame	A0 : B1	A0 : B0	non-validated
BRCA	TCGA.BH.A0BL.01A	CGGBP1__SCN11A	4.3	tier1	5UTR-CDS	A0 : B0	A0 : B0	NA
BRCA	TCGA.AR.A251.01A	CGNL1__TCF12	0.13	tier1	CDS-3UTR	A0 : B0	A0 : B0	NA
BRCA	TCGA.OL.A5D7.01A	CHAF1A__CCDC94	0.014	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.A8.A06U.01A	CHD2__HOMER2	0.2	tier1	In-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.AO.A12A.01A	CHD4__CLEC9A	0.032	tier1	CDS-5UTR	A0 : B0	A0 : B0	NA
BRCA	TCGA.A1.A0SK.01A	CHD4__DTX1	2.8	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.EW.A1PF.01A	CHD6__CCDC90A	0.47	tier1	5UTR-CDS	A0 : B0	A0 : B0	NA
BRCA	TCGA.C8.A8HR.01A	CHD6__CHRNB4	0.024	tier4	In-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.C8.A12L.01A	CHD6__EFCAB11	0.098	tier1	In-frame	A1 : B0	A1 : B0	non-validated
BRCA	TCGA.E2.A106.01A	CHD6__TSHZ2	0.071	tier4	CDS-3UTR	A0 : B0	A0 : B0	NA
BRCA	TCGA.AQ.A54O.01A	CHD6__WFDC11	0.85	tier2	5UTR-5UTR	A0 : B0	A0 : B0	NA
BRCA	TCGA.AR.A1AU.01A	CHD7__ASPH	0.57	tier1	Out-of-frame	A1 : B1	A0 : B1	NA
BRCA	TCGA.D8.A1JL.01A	CHD7__CCDC58	3.2	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.C8.A27A.01A	CHD7__TACC1	0.069	tier1	CDS-5UTR	A1 : B0	A0 : B0	NA
BRCA	TCGA.PE.A5DD.01A	CHD8__IMPG1	1.7	tier1	Out-of-frame	A1 : B1	A1 : B0	NA
BRCA	TCGA.AN.A0FX.01A	CHD8__RAB2B	0.25	tier1	5UTR-CDS	A0 : B0	A0 : B0	NA
BRCA	TCGA.AO.A128.01A	CHD8__TOX4	0.032	tier1	In-frame	A1 : B0	A1 : B0	NA
BRCA	TCGA.AR.A1AN.01A	CHD9__DLC1	0.25	tier2	Out-of-frame	A0 : B1	A0 : B0	NA
BRCA	TCGA.A8.A081.01A	CHD9__KSR1	0.005	tier1	5UTR-5UTR	A0 : B0	A0 : B0	NA
BRCA	TCGA.B6.A0RU.01A	CHD9__RAD51B	1.1	tier1	In-frame	A1 : B0	A0 : B0	non-validated
BRCA	TCGA.A8.A092.01A	CHD9__SPG7	1.3	tier1	Out-of-frame	A1 : B0	A0 : B0	validated
BRCA	TCGA.A8.A09Q.01A	CHFR__OSBPL8	0.24	tier1	CDS-5UTR	A1 : B0	A0 : B0	NA
BRCA	TCGA.LL.A440.01A	CHKA__PC	0.38	tier1	In-frame	A0 : B1	A0 : B0	NA
BRCA	TCGA.AC.A3OD.01B	CHKA__XRRA1	0.012	tier1	Out-of-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.AR.A255.01A	CHM__ABCB7	0.13	tier1	Out-of-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.AR.A256.01A	CHMP4B__CBFA2T2	0.45	tier1	Out-of-frame	A0 : B0	A0 : B0	validated
BRCA	TCGA.E2.A15H.01A	CHMP5__VMP1	0.038	tier1	In-frame	A0 : B0	A0 : B0	non-validated
BRCA	TCGA.A8.A08L.01A	CHN1__TSGA10	1.2	tier2	CDS-5UTR	A0 : B0	A0 : B0	non-validated
BRCA	TCGA.A7.A6VY.01A	CHPT1__MYBPC1	0.99	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.BH.A0B1.01A	CHRNB3__RB1CC1	1.9	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.UL.AAZ6.01A	CHST8__ZNF146	1.2	tier2	5UTR-5UTR	A0 : B0	A0 : B0	NA
BRCA	TCGA.AO.A03P.01A	CHSY1__SPOCK2	0.25	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.EW.A2FR.01A	CIC__LMNA	0.051	tier3	CDS-5UTR	A0 : B0	A0 : B0	NA
BRCA	TCGA.BH.A1F0.01A	CIC__ZFP57	0.11	tier1	Out-of-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.AC.A23H.01A	CKAP5__VMP1	1.9	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.A2.A0D0.01A	CLASRP__RELB	0.78	tier1	Out-of-frame	A0 : B0	A0 : B0	non-validated
BRCA	TCGA.AN.A04C.01A	CLCN3__SMAD1	0.5	tier1	In-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.AR.A2LR.01A	CLCN3__UBE2D3	0.27	tier1	Out-of-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.S3.AA0Z.01A	CLEC16A__GRIN2A	0.29	tier2	Out-of-frame	A0 : B1	A0 : B0	NA
BRCA	TCGA.D8.A13Y.01A	CLEC16A__LITAF	0.053	tier1	CDS-5UTR	A0 : B0	A0 : B0	NA
BRCA	TCGA.AR.A2LR.01A	CLIC1__HIST1H2BC	100.0	tier1	CDS-3UTR	A0 : B0	A0 : B0	NA
BRCA	TCGA.AC.A8OQ.01A	CLIP1__RSRC2	0.039	tier1	NA	A0 : B0	A0 : B0	NA
BRCA	TCGA.A2.A0YM.01A	CLIP1__SLC24A6	0.69	tier1	Out-of-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.D8.A1Y0.01A	CLIP4__FAM179A	1.9	tier1	CDS-5UTR	A0 : B0	A0 : B0	NA
BRCA	TCGA.AC.A62V.01A	CLK2__CD244	2.3	tier1	Out-of-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.EW.A6SC.01A	CLMN__EVL	0.83	tier1	Out-of-frame	A0 : B1	A0 : B0	NA
BRCA	TCGA.B6.A0X1.01A	CLN6__PAQR5	0.13	tier2	CDS-5UTR	A0 : B0	A0 : B0	NA
BRCA	TCGA.D8.A27G.01A	CLNS1A__AQP11	0.065	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.A8.A09D.01A	CLPB__ARMC4	1.4	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.B6.A0RL.01A	CLPB__C2CD3	0.24	tier1	In-frame	A0 : B1	A0 : B0	NA
BRCA	TCGA.AR.A24K.01A	CLPB__MTUS2	0.55	tier2	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.BH.A0HL.01A	CLPB__PTPN1	0.41	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.LL.A441.01A	CLPB__SHANK2	3.6	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.BH.A0B9.01A	CLPB__STARD10	0.23	tier1	CDS-5UTR	A0 : B0	A0 : B0	non-validated
BRCA	TCGA.A7.A26I.01B	CLPTM1__CYP2A7	0.2	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.AR.A0TU.01A	CLSTN1__CTNNBIP1	0.16	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.AO.A1KQ.01A	CLSTN3__PLCZ1	0.094	tier3	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.B6.A0IE.01A	CLTB__SIL1	0.024	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.AN.A0FD.01A	CLTC__FAM129C	8.4	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.EW.A1J1.01A	CLTC__OTOP3	0.5	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.BH.A18J.01A	CMC1__VPS37C	0.62	tier1	CDS-5UTR	A0 : B0	A0 : B0	NA
BRCA	TCGA.AN.A0FJ.01A	CMIP__CDYL2	0.35	tier1	In-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.A8.A06N.01A	CMPK1__SH2D1B	0.92	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.A2.A0ST.01A	CMTM8__NR1D2	0.015	tier1	Out-of-frame	A0 : B1	A0 : B0	NA
BRCA	TCGA.E2.A155.01A	CMTM8__RAF1	0.14	tier1	CDS-5UTR	A0 : B0	A0 : B0	NA
BRCA	TCGA.C8.A135.01A	CNKSR1__MAN1C1	0.44	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.C8.A12Q.01A	CNNM2__NOTCH4	0.29	tier2	Out-of-frame	A0 : B0	A0 : B0	validated
BRCA	TCGA.BH.A0B9.01A	CNNM2__SUFU	0.062	tier1	Out-of-frame	A0 : B0	A0 : B0	non-validated
BRCA	TCGA.A1.A0SO.01A	CNOT1__RASSF8	1.7	tier1	5UTR-CDS	A0 : B0	A0 : B0	NA
BRCA	TCGA.A8.A08F.01A	CNOT2__NUP107	0.051	tier1	5UTR-CDS	A0 : B1	A0 : B1	NA
BRCA	TCGA.BH.A1EW.01A	CNOT2__PDE3A	1.3	tier1	5UTR-CDS	A0 : B1	A0 : B0	NA
BRCA	TCGA.AN.A0AT.01A	CNOT2__RAB3IP	0.47	tier1	Out-of-frame	A1 : B1	A0 : B0	non-validated
BRCA	TCGA.A7.A4SF.01A	CNOT2__SLC45A4	0.1	tier1	In-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.3C.AAAU.01A	CNOT2__SRGAP1	0.12	tier1	In-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.EW.A1OV.01A	COG2__PCNXL2	0.21	tier3	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.A7.A3IZ.01A	COG5__DNAH7	2.4	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.BH.A0W7.01A	COG5__DPP6	0.022	tier1	In-frame	A0 : B1	A0 : B0	NA
BRCA	TCGA.AC.A2QH.01B	COG5__FOXP2	0.46	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.C8.A130.01A	COG6__LHFP	0.39	tier2	Out-of-frame	A0 : B0	A0 : B0	validated
BRCA	TCGA.C8.A26V.01A	COG6__MAPK8	0.31	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.E2.A15H.01A	COIL__CDR2L	0.33	tier1	Out-of-frame	A1 : B1	A0 : B0	non-validated
BRCA	TCGA.OL.A5RZ.01A	COL11A1__ARL5C	0.24	tier2	CDS-5UTR	A0 : B0	A0 : B0	NA
BRCA	TCGA.AR.A2LR.01A	COL16A1__ATF7IP	0.99	tier1	CDS-5UTR	A0 : B0	A0 : B0	NA
BRCA	TCGA.AC.A2QH.01B	COL1A2__WNT2	0.56	tier2	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.A2.A0CL.01A	COL25A1__CCDC109B	0.77	tier1	NA	A0 : B0	A0 : B0	NA
BRCA	TCGA.A8.A085.01A	COL4A5__RGAG1	1.3	tier1	CDS-5UTR	A0 : B0	A0 : B0	NA
BRCA	TCGA.B6.A0IO.01A	COMMD10__DGKI	0.93	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.AR.A5QN.01A	COPS3__TEKT3	0.36	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.D8.A27H.01A	COQ4__DNM1	0.22	tier1	Out-of-frame	A0 : B0	A0 : B0	non-validated
BRCA	TCGA.AO.A0JD.01A	CORO1C__ANKS1B	1.9	tier2	5UTR-CDS	A0 : B0	A0 : B0	NA
BRCA	TCGA.C8.A12M.01A	CORO1C__C12orf42	0.21	tier1	Out-of-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.D8.A1JT.01A	COX6C__DDX27	0.077	tier4	NA	A0 : B0	A0 : B0	NA
BRCA	TCGA.E9.A1RD.01A	COX6C__EIF2AK2	1.0	tier4	NA	A0 : B0	A0 : B0	NA
BRCA	TCGA.EW.A1PD.01A	COX6C__RGS22	0.12	tier1	5UTR-CDS	A0 : B0	A0 : B0	NA
BRCA	TCGA.BH.A18V.01A	CP__SOX5	0.33	tier1	Out-of-frame	A1 : B1	A0 : B0	NA
BRCA	TCGA.BH.A18V.06A	CP__SOX5	0.33	tier1	Out-of-frame	A1 : B1	A0 : B0	NA
BRCA	TCGA.AR.A0U4.01A	CP__WWTR1	2.9	tier1	CDS-5UTR	A0 : B0	A0 : B0	NA
BRCA	TCGA.AO.A1KR.01A	CPAMD8__HAUS8	0.088	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.AR.A252.01A	CPB1__ANXA1	0.04	tier3	3UTR-5UTR	A0 : B0	A0 : B0	NA
BRCA	TCGA.EW.A2FS.01A	CPB1__AP3S2	1.3	tier3	3UTR-CDS	A0 : B0	A0 : B0	NA
BRCA	TCGA.LL.A5YM.01A	CPB1__ATP5G3	0.34	tier3	3UTR-5UTR	A0 : B0	A0 : B0	NA
BRCA	TCGA.AO.A0JI.01A	CPB1__NDUFV1	100.0	tier3	NA	A0 : B0	A0 : B0	NA
BRCA	TCGA.E9.A1NE.01A	CPB1__SNW1	0.47	tier4	3UTR-CDS	A0 : B0	A0 : B0	NA
BRCA	TCGA.A2.A1FW.01A	CPD__AATF	0.2	tier1	In-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.C8.A273.01A	CPD__SKAP1	1.8	tier1	In-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.OL.A5D8.01A	CPD__TBX2	0.089	tier1	In-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.E2.A10C.01A	CPM__KCNMA1	0.47	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.E2.A9RU.01A	CPSF1__ARHGAP39	0.018	tier1	Out-of-frame	A1 : B0	A1 : B0	NA
BRCA	TCGA.AN.A0FZ.01A	CPSF6__MDM1	0.2	tier1	3UTR-CDS	A0 : B0	A0 : B0	NA
BRCA	TCGA.AN.A0FZ.01A	CPSF6__NAV3	0.055	tier1	3UTR-CDS	A0 : B1	A0 : B0	NA
BRCA	TCGA.A8.A0A7.01A	CPSF6__OSBPL8	0.04	tier2	CDS-5UTR	A1 : B0	A0 : B0	NA
BRCA	TCGA.E2.A15R.01A	CPT1A__ADAM2	0.5	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.EW.A2FW.01A	CPT1A__KCNG1	5.0	tier1	CDS-5UTR	A0 : B0	A0 : B0	NA
BRCA	TCGA.E2.A572.01A	CPT1A__MS4A18	0.63	tier1	NA	A0 : B0	A0 : B0	NA
BRCA	TCGA.C8.A27A.01A	CPT1B__SEC14L3	0.9	tier2	In-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.BH.A0HP.01A	CRBN__GRM7	1.2	tier1	NA	A0 : B0	A0 : B0	NA
BRCA	TCGA.A8.A09Q.01A	CREB1__FASTKD2	0.87	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.C8.A1HM.01A	CREB3L2__SHANK2	0.2	tier1	In-frame	A1 : B1	A0 : B0	NA
BRCA	TCGA.A2.A0YE.01A	CREB5__USP42	0.13	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.B6.A0IA.01A	CREBBP__NUBP1	0.48	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.OL.A66I.01A	CREBBP__ZNF500	0.029	tier4	In-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.A8.A06P.01A	CRHR1__CENPP	0.24	tier3	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.A2.A0CY.01A	CRLF3__ATAD5	0.19	tier3	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.A8.A06X.01A	CRLS1__SEL1L2	3.8	tier2	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.EW.A423.01A	CRTC2__KIAA0907	1.5	tier3	In-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.AO.A1KR.01A	CS__PRIM1	1.9	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.GM.A3XL.01A	CSAD__ITGB7	0.077	tier1	5UTR-5UTR	A0 : B0	A0 : B0	non-validated
BRCA	TCGA.E9.A1ND.01A	CSE1L__ARFGEF2	0.32	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.3C.AALJ.01A	CSE1L__LETM2	0.28	tier1	5UTR-5UTR	A0 : B0	A0 : B0	NA
BRCA	TCGA.BH.A1EV.01A	CSMD2__IFI44L	1.2	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.C8.A27A.01A	CSMD3__RIMS2	0.31	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.E2.A14P.01A	CSNK1E__DNAL4	0.012	tier1	5UTR-5UTR	A0 : B0	A0 : B0	non-validated
BRCA	TCGA.LD.A7W5.01A	CTBP1__POLN	0.15	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.A8.A08L.01A	CTBP2__ADAM12	0.085	tier1	5UTR-CDS	A0 : B0	A0 : B0	non-validated
BRCA	TCGA.BH.A0HB.01A	CTD-2192J16.17__AKAP8L	100.0	tier2	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.AO.A03P.01A	CTD-2192J16.17__WIZ	3.8	tier1	Out-of-frame	A0 : B1	A0 : B0	NA
BRCA	TCGA.D8.A147.01A	CTD-2589C9.4__EHBP1	3.5	tier1	In-frame	A0 : B1	A0 : B0	NA
BRCA	TCGA.OL.A66I.01A	CTD-2589C9.4__FOXR1	0.77	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.AN.A0FJ.01A	CTDSPL__TMCC1	0.28	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.D8.A13Y.01A	CTF1__BCL7C	0.003	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.A2.A3XY.01A	CTIF__SMAD2	2.5	tier1	CDS-5UTR	A1 : B0	A0 : B0	NA
BRCA	TCGA.A2.A1G1.01A	CTIF__WASF2	0.028	tier2	5UTR-5UTR	A0 : B0	A0 : B0	NA
BRCA	TCGA.C8.A26Y.01A	CTNNA3__C14orf166B	0.054	tier2	In-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.A7.A5ZX.01A	CTNNA3__LOH12CR1	0.24	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.AO.A03V.01A	CTNNA3__MGMT	0.7	tier2	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.AR.A1AS.01A	CTNNB1__SLC38A5	0.1	tier3	3UTR-5UTR	A0 : B0	A0 : B0	NA
BRCA	TCGA.E2.A14N.01A	CTNNB1__THRB	0.023	tier1	5UTR-5UTR	A0 : B0	A0 : B0	NA
BRCA	TCGA.C8.A1HN.01A	CTNNBL1__TTI1	0.96	tier1	CDS-5UTR	A0 : B0	A0 : B0	NA
BRCA	TCGA.E9.A244.01A	CTNND1__DDAH2	0.11	tier1	5UTR-CDS	A0 : B0	A0 : B0	NA
BRCA	TCGA.AR.A1AH.01A	CTNND1__TMX2	0.009	tier1	5UTR-CDS	A0 : B1	A0 : B0	NA
BRCA	TCGA.E9.A247.01A	CTNND2__P4HA2	0.19	tier2	CDS-5UTR	A0 : B0	A0 : B0	NA
BRCA	TCGA.A2.A0T7.01A	CTPS2__RBBP7	1.2	tier1	In-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.AN.A0FJ.01A	CTPS2__RBBP7	1.2	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.D8.A27R.01A	CTSH__RASGRF1	0.14	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.A8.A07O.01A	CTTN__ANO1	0.046	tier1	In-frame	A1 : B1	A0 : B0	NA
BRCA	TCGA.E9.A228.01A	CTTN__FOLR1	0.044	tier1	5UTR-5UTR	A0 : B0	A0 : B0	NA
BRCA	TCGA.AR.A2LK.01A	CTTN__PLEKHA5	0.76	tier3	NA	A0 : B0	A0 : B0	non-validated
BRCA	TCGA.A2.A0EQ.01A	CTTN__PSME2	0.047	tier2	5UTR-CDS	A0 : B0	A0 : B0	NA
BRCA	TCGA.B6.A0IN.01A	CUL1__GIMAP5	0.26	tier2	CDS-5UTR	A0 : B0	A0 : B0	NA
BRCA	TCGA.E9.A1NE.01A	CUL3__IRS1	0.034	tier1	CDS-3UTR	A1 : B0	A1 : B0	NA
BRCA	TCGA.A2.A0CZ.01A	CUL5__RAB39	0.41	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.A8.A06U.01A	CUL5__SHANK2	0.048	tier1	In-frame	A0 : B1	A0 : B0	NA
BRCA	TCGA.C8.A12K.01A	CUTC__C19orf57	1.5	tier1	Out-of-frame	A0 : B1	A0 : B0	NA
BRCA	TCGA.A2.A0T7.01A	CUX1__MARCH10	1.6	tier1	In-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.AR.A0U3.01A	CWC25__FBXO47	0.66	tier2	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.E9.A228.01A	CWC25__MED24	0.32	tier1	CDS-5UTR	A1 : B0	A0 : B0	NA
BRCA	TCGA.3C.AALI.01A	CWC25__PRKAR1A	0.31	tier1	CDS-5UTR	A1 : B0	A0 : B0	NA
BRCA	TCGA.3C.AALI.01A	CWC25__SLC35B1	0.7	tier1	Out-of-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.OL.A66P.01A	CXCL16__TEKT1	3.4	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.C8.A12P.01A	CYB561__GNA13	2.5	tier1	5UTR-CDS	A0 : B0	A0 : B0	NA
BRCA	TCGA.AO.A0J5.01A	CYB561__USP32	0.79	tier1	5UTR-CDS	A0 : B1	A0 : B0	NA
BRCA	TCGA.S3.A6ZF.01A	CYB5R4__CNTN6	4.4	tier2	CDS-5UTR	A0 : B0	A0 : B0	NA
BRCA	TCGA.UL.AAZ6.01A	CYFIP1__ACACA	2.6	tier1	In-frame	A1 : B1	A0 : B1	NA
BRCA	TCGA.E2.A158.01A	CYFIP1__TUBGCP5	0.077	tier1	Out-of-frame	A1 : B0	A1 : B0	NA
BRCA	TCGA.D8.A27N.01A	CYTH1__MRC2	0.2	tier1	NA	A0 : B0	A0 : B0	NA
BRCA	TCGA.A8.A09Q.01A	CYTH3__MAD1L1	0.14	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.A2.A0T1.01A	DAB2IP__HTN3	0.64	tier1	CDS-5UTR	A1 : B0	A0 : B0	NA
BRCA	TCGA.BH.A0H7.01A	DAG1__ZNF589	2.4	tier1	5UTR-CDS	A0 : B0	A0 : B0	NA
BRCA	TCGA.OL.A66I.01A	DAGLA__C11orf66	0.002	tier1	CDS-5UTR	A0 : B0	A0 : B0	NA
BRCA	TCGA.A8.A09X.01A	DAP__SNX9	0.35	tier1	In-frame	A0 : B0	A0 : B0	validated
BRCA	TCGA.B6.A0I8.01A	DAPK1__GRIN2D	0.09	tier4	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.AC.A2FB.01A	DBF4B__DYNC2H1	5.1	tier1	Out-of-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.AC.A2BK.01A	DBNDD1__C19orf20	0.09	tier1	Out-of-frame	A0 : B0	A0 : B0	non-validated
BRCA	TCGA.AN.A0XV.01A	DCAF12__CNBD1	0.7	tier2	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.AN.A0AS.01A	DCAF5__RAB5B	0.2	tier1	CDS-5UTR	A1 : B0	A0 : B0	NA
BRCA	TCGA.A7.A26G.01A	DCAF6__MPZL1	0.6	tier1	In-frame	A0 : B1	A0 : B0	non-validated
BRCA	TCGA.C8.A137.01A	DCAF6__MPZL1	0.6	tier2	Out-of-frame	A1 : B1	A1 : B0	NA
BRCA	TCGA.BH.A18R.01A	DCAF7__VMP1	1.7	tier1	CDS-5UTR	A1 : B0	A0 : B0	non-validated
BRCA	TCGA.C8.A12Q.01A	DCAKD__PLCD3	0.26	tier1	5UTR-CDS	A0 : B1	A0 : B0	non-validated
BRCA	TCGA.BH.A1F2.01A	DCK__GRSF1	0.18	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.A2.A0CW.01A	DCLK1__RCBTB1	0.28	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.A8.A09V.01A	DCLK1__SERPINE3	0.56	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.AO.A0JM.01A	DCUN1D1__CCDC50	0.2	tier1	In-frame	A0 : B0	A0 : B0	non-validated
BRCA	TCGA.AC.A6IW.01A	DDAH1__ZNHIT6	0.002	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.AR.A256.01A	DDB1__C11orf10	0.94	tier2	CDS-3UTR	A0 : B0	A0 : B0	validated
BRCA	TCGA.BH.A18V.01A	DDR2__GAB1	3.2	tier1	Out-of-frame	A1 : B1	A0 : B0	NA
BRCA	TCGA.C8.A132.01A	DDX31__AK8	1.2	tier3	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.AR.A1AY.01A	DDX39B__PRPH2	0.019	tier1	Out-of-frame	A0 : B0	A0 : B0	validated
BRCA	TCGA.A2.A25B.01A	DDX42__BRIP1	0.052	tier1	In-frame	A1 : B1	A0 : B1	non-validated
BRCA	TCGA.AN.A0FW.01A	DDX42__DCAF7	0.89	tier1	5UTR-CDS	A0 : B0	A0 : B0	NA
BRCA	TCGA.A1.A0SN.01A	DDX42__RPS6KB1	0.22	tier1	5UTR-CDS	A0 : B0	A0 : B0	NA
BRCA	TCGA.E9.A1RH.01A	DDX5__ART1	2.1	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.BH.A1EV.01A	DDX52__TMIGD1	3.3	tier2	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.D8.A1XK.01A	DDX54__IQCD	1.1	tier3	In-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.EW.A1P1.01A	DDX6__FOXR1	2.3	tier4	Out-of-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.D8.A1JG.01B	DEAF1__PDDC1	0.39	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.LD.A9QF.01A	DEK__NUP210L	0.72	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.D8.A1JI.01A	DENND1A__CADPS2	0.31	tier2	In-frame	A1 : B1	A0 : B0	NA
BRCA	TCGA.A2.A0T1.01A	DENND1A__LRRC69	0.64	tier1	Out-of-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.BH.A0DD.01A	DENND1B__FAM190A	0.034	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.OK.A5Q2.01A	DENND1B__RRP15	0.045	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.AR.A0TP.01A	DENND2C__AMPD1	1.8	tier3	5UTR-CDS	A0 : B0	A0 : B0	NA
BRCA	TCGA.A8.A08G.01A	DENND5A__PGPEP1L	0.92	tier1	Out-of-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.D8.A1XT.01A	DENND5A__SBF2	0.031	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.AO.A12D.01A	DENND5B__NUP54	0.8	tier2	Out-of-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.E2.A1IO.01A	DEPDC5__CDH19	0.35	tier1	CDS-5UTR	A0 : B0	A0 : B0	NA
BRCA	TCGA.D8.A140.01A	DEPDC5__SFI1	0.019	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.E9.A1RH.01A	DEPTOR__ENPP2	0.3	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.EW.A1J6.01A	DERA__LRP6	0.05	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.A7.A26G.01A	DGCR2__CLTCL1	0.27	tier1	Out-of-frame	A1 : B0	A0 : B0	validated
BRCA	TCGA.A7.A4SC.01A	DGCR2__CLTCL1	0.27	tier1	Out-of-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.BH.A0EE.01A	DGCR2__PPPDE2	0.66	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.A8.A083.01A	DGCR2__SEC63	0.007	tier3	NA	A0 : B0	A0 : B0	NA
BRCA	TCGA.A8.A084.01A	DGKD__SP140	2.5	tier1	Out-of-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.C8.A275.01A	DGKE__KRT222	0.063	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.E2.A15A.01A	DGKH__MED13L	1.5	tier3	Out-of-frame	A0 : B1	A0 : B0	NA
BRCA	TCGA.E2.A15A.06A	DGKH__MED13L	1.5	tier1	Out-of-frame	A0 : B1	A0 : B0	NA
BRCA	TCGA.AC.A8OQ.01A	DGUOK__C2orf78	0.43	tier1	In-frame	A0 : B1	A0 : B0	NA
BRCA	TCGA.GM.A2DB.01A	DHCR7__AP000867.1	0.027	tier1	CDS-3UTR	A0 : B0	A0 : B0	NA
BRCA	TCGA.AR.A0TW.01A	DHX35__DNTTIP1	0.043	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.LL.A7SZ.01A	DHX57__DNAJC5B	0.82	tier1	5UTR-5UTR	A0 : B0	A0 : B0	NA
BRCA	TCGA.C8.A12P.01A	DHX57__SOS1	1.5	tier3	In-frame	A0 : B1	A0 : B0	NA
BRCA	TCGA.AN.A0FY.01A	DIAPH3__TDRD3	0.042	tier1	In-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.AO.A0J2.01A	DIP2A__PRH1	0.15	tier1	CDS-3UTR	A1 : B0	A0 : B0	validated
BRCA	TCGA.AO.A0J2.01A	DIP2A__PRR4	0.5	tier1	In-frame	A1 : B0	A0 : B0	validated
BRCA	TCGA.D8.A1JL.01A	DIP2C__YY1	0.54	tier1	In-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.A1.A0SK.01A	DIS3L2__SPHKAP	0.86	tier2	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.BH.A18U.01A	DIS3L2__UBE2E3	2.4	tier1	In-frame	A0 : B0	A0 : B0	validated
BRCA	TCGA.A1.A0SO.01A	DIXDC1__GAB2	0.11	tier1	In-frame	A1 : B1	A0 : B0	NA
BRCA	TCGA.E9.A229.01A	DLG5__PCDH15	0.7	tier1	In-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.D8.A147.01A	DLGAP1__RAB31	0.88	tier2	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.AC.A62V.01A	DLGAP4__TUBD1	0.44	tier3	In-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.A8.A09R.01A	DLGAP5__L2HGDH	1.3	tier2	5UTR-CDS	A0 : B0	A0 : B0	NA
BRCA	TCGA.BH.A0BC.01A	DMC1__DNAL4	0.44	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.OL.A5D7.01A	DNAH1__ALAS1	0.027	tier1	5UTR-CDS	A0 : B0	A0 : B0	NA
BRCA	TCGA.S3.AA17.01A	DNAJB12__CTNNA3	0.5	tier1	Out-of-frame	A1 : B1	A0 : B0	NA
BRCA	TCGA.AO.A03V.01A	DNAJB12__SLC25A16	0.022	tier1	In-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.A8.A081.01A	DNAJC1__DCLRE1C	0.079	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.B6.A0IH.01A	DNAJC1__PLEKHF2	2.6	tier2	CDS-5UTR	A0 : B0	A0 : B0	NA
BRCA	TCGA.AC.A8OQ.01A	DNAJC17__INO80	2.8	tier3	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.AR.A1AV.01A	DNAJC22__NTN4	0.34	tier1	5UTR-CDS	A0 : B0	A0 : B0	NA
BRCA	TCGA.GM.A2DF.01A	DNAJC3__GPC6	0.53	tier2	Out-of-frame	A1 : B0	A0 : B0	validated
BRCA	TCGA.AC.A8OQ.01A	DNASE2__TRMT1	0.046	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.AN.A0FJ.01A	DNER__TRIP12	0.062	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.GM.A2DB.01A	DNM2__ILF3	0.35	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.UU.A93S.01A	DNM2__ILF3	0.35	tier1	Out-of-frame	A1 : B1	A0 : B1	NA
BRCA	TCGA.D8.A1JL.01A	DNM2__PPAN-P2RY11	0.54	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.OL.A5D6.01A	DNM2__SLC44A2	0.057	tier1	In-frame	A1 : B1	A0 : B0	NA
BRCA	TCGA.UU.A93S.01A	DNM2__TGIF1	0.61	tier1	CDS-5UTR	A1 : B0	A1 : B0	NA
BRCA	TCGA.AN.A0FJ.01A	DNMT1__ICAM3	1.2	tier1	Out-of-frame	A1 : B0	A1 : B0	NA
BRCA	TCGA.D8.A1X9.01A	DNTTIP2__GCLM	2.6	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.AR.A2LL.01A	DOCK1__APBA1	0.022	tier1	CDS-5UTR	A0 : B0	A0 : B0	NA
BRCA	TCGA.AN.A0AS.01A	DOCK1__MGMT	0.42	tier1	Out-of-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.C8.A1HN.01A	DOCK1__PCDH15	0.64	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.A2.A04U.01A	DOCK1__PPAPDC1A	1.3	tier1	In-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.AR.A24Z.01A	DOCK7__INADL	0.63	tier1	Out-of-frame	A0 : B0	A0 : B0	non-validated
BRCA	TCGA.AR.A24Z.01A	DOCK7__PPP1R12B	0.81	tier2	Out-of-frame	A0 : B0	A0 : B0	non-validated
BRCA	TCGA.AC.A62Y.01A	DOLPP1__SPTAN1	0.17	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.EW.A2FR.01A	DOLPP1__TBC1D13	0.3	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.E2.A1B5.01A	DOPEY2__SH3BGR	0.34	tier4	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.BH.A0EE.01A	DOPEY2__TRPM2	0.49	tier1	In-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.OL.A66I.01A	DOT1L__EPB41L2	0.008	tier1	CDS-5UTR	A1 : B0	A0 : B0	NA
BRCA	TCGA.BH.A42T.01A	DPF2__TRIM49L2	0.21	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.BH.A0B2.01A	DPM1__EZR	0.13	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.A7.A13D.01A	DPP3__PACS1	1.7	tier1	In-frame	A0 : B0	A0 : B0	validated
BRCA	TCGA.D8.A1Y2.01A	DPP8__C15orf42	0.05	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.A8.A091.01A	DPY19L1__NRXN2	1.2	tier4	Out-of-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.3C.AAAU.01A	DPY19L2__MRPL1	0.21	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.E2.A14Z.01A	DPYD__EDIL3	0.061	tier1	Out-of-frame	A0 : B1	A0 : B0	NA
BRCA	TCGA.BH.A1EU.01A	DPYD__STAB2	0.031	tier1	In-frame	A1 : B1	A1 : B0	NA
BRCA	TCGA.B6.A401.01A	DPYSL2__RP11-360L9.4	100.0	tier1	NA	A0 : B0	A0 : B0	NA
BRCA	TCGA.EW.A1OZ.01A	DRG2__ZNF624	0.29	tier3	Out-of-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.BH.A1EY.01A	DSCR3__BACH1	0.062	tier1	NA	A0 : B0	A0 : B0	NA
BRCA	TCGA.E2.A1LG.01A	DSCR3__IGSF5	3.3	tier1	Out-of-frame	A0 : B0	A0 : B0	non-validated
BRCA	TCGA.C8.A130.01A	DSCR3__MACROD2	0.015	tier1	Out-of-frame	A0 : B0	A0 : B0	non-validated
BRCA	TCGA.AN.A04A.01A	DST__KIAA0319L	1.2	tier1	Out-of-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.C8.A1HN.01A	DSTN__TCFL5	0.59	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.E9.A1R6.01A	DTNA__ZNF521	1.2	tier3	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.BH.A18V.06A	DTNB__ASXL2	0.79	tier2	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.BH.A18T.01A	DTNB__RBKS	2.1	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.D8.A1JP.01A	DTNBP1__DNAH8	0.98	tier3	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.C8.A12V.01A	DTNBP1__RSBN1L	0.005	tier3	Out-of-frame	A1 : B1	A0 : B0	NA
BRCA	TCGA.D8.A1XZ.01A	DTWD1__C15orf33	0.19	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.A1.A0SJ.01A	DTX4__CCDC102B	1.9	tier2	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.E2.A15T.01A	DUS2L__UNC5C	0.7	tier1	In-frame	A0 : B1	A0 : B0	NA
BRCA	TCGA.AR.A0TT.01A	DUSP12__NAV1	0.59	tier1	In-frame	A0 : B1	A0 : B0	NA
BRCA	TCGA.A8.A09I.01A	DUSP14__EME1	1.6	tier1	5UTR-5UTR	A0 : B0	A0 : B0	validated
BRCA	TCGA.D8.A140.01A	DUSP7__PBRM1	0.021	tier3	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.D8.A142.01A	DYM__CTIF	0.047	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.AN.A0FJ.01A	DYM__MYO5B	0.078	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.A8.A06R.01A	DYNC1H1__PPP2R5C	0.015	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.OL.A5D8.01A	DYNC1I2__BRE	2.1	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.B6.A0I8.01A	DYNC2H1__KCNQ5	0.27	tier4	Out-of-frame	A0 : B1	A0 : B0	NA
BRCA	TCGA.A2.A1FW.01A	DYNLL2__SEPT4	0.1	tier1	5UTR-CDS	A0 : B0	A0 : B0	NA
BRCA	TCGA.A2.A0CW.01A	DYRK1A__BRWD1	0.24	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.E2.A15A.01A	DYRK1A__KDM4B	4.5	tier3	5UTR-CDS	A0 : B1	A0 : B0	NA
BRCA	TCGA.BH.A1FD.01A	DYRK1A__MRPS6	2.7	tier1	Out-of-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.C8.A130.01A	DYRK1A__ZBTB46	1.2	tier1	CDS-5UTR	A1 : B0	A0 : B0	validated
BRCA	TCGA.E9.A1NA.01A	DYX1C1__RFX7	0.14	tier4	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.B6.A400.01A	DZIP1__PCCA	0.63	tier3	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.LL.A740.01A	E2F3__FBXO9	0.063	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.A8.A09A.01A	E2F6__LYRM4	2.1	tier4	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.AO.A03L.01A	EAF2__RGS9	0.31	tier1	Out-of-frame	A1 : B0	A0 : B0	non-validated
BRCA	TCGA.E2.A1LA.01A	ECD__CXCL12	0.11	tier1	Out-of-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.B6.A0IM.01A	EDC3__SNX29	0.29	tier1	5UTR-CDS	A0 : B1	A0 : B0	NA
BRCA	TCGA.BH.A0H7.01A	EDEM2__DOK5	2.0	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.BH.A0B7.01A	EEA1__PAH	1.5	tier1	In-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.AC.A5EH.01A	EEA1__TMCC3	0.049	tier1	In-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.D8.A1XD.01A	EEF1A2__DKKL1	0.23	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.A8.A0AD.01A	EEF1E1__EYS	1.4	tier2	NA	A0 : B0	A0 : B0	NA
BRCA	TCGA.BH.A0B9.01A	EEF2K__UQCRC2	0.14	tier1	Out-of-frame	A0 : B0	A0 : B0	non-validated
BRCA	TCGA.C8.A12Q.01A	EEF2K__VWA3A	0.25	tier3	CDS-5UTR	A0 : B0	A0 : B0	validated
BRCA	TCGA.OL.A66P.01A	EEF2K__VWA3A	0.25	tier3	CDS-3UTR	A1 : B0	A1 : B0	NA
BRCA	TCGA.A8.A08I.01A	EFCAB11__ASB2	0.31	tier1	In-frame	A0 : B0	A0 : B1	NA
BRCA	TCGA.E9.A22D.01A	EFHA1__ATP8A2	0.65	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.AR.A0TZ.01A	EFHB__PLCL2	0.42	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.BH.A0HY.01A	EFHC1__LPHN3	0.38	tier1	CDS-5UTR	A0 : B0	A0 : B0	NA
BRCA	TCGA.AO.A0JE.01A	EFHD1__EIF4E2	0.99	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.C8.A12Q.01A	EFHD1__EIF4E2	0.99	tier1	In-frame	A0 : B0	A0 : B0	non-validated
BRCA	TCGA.AR.A0TT.01A	EFNA3__USP21	0.52	tier1	CDS-5UTR	A0 : B0	A0 : B0	NA
BRCA	TCGA.E2.A109.01A	EFNA4__C20orf96	0.24	tier1	In-frame	A0 : B0	A0 : B0	non-validated
BRCA	TCGA.E2.A1LE.01A	EFNA4__FLAD1	0.41	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.BH.A0AV.01A	EFR3A__ASAP1	0.096	tier3	In-frame	A0 : B0	A0 : B0	non-validated
BRCA	TCGA.AR.A0TT.01A	EGLN1__PGBD5	0.25	tier1	CDS-5UTR	A0 : B0	A0 : B0	NA
BRCA	TCGA.D8.A147.01A	EHBP1__BCL11A	1.1	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.AR.A1AO.01A	EHBP1__COMMD1	2.0	tier1	In-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.A8.A07C.01A	EHBP1__FAM59B	0.95	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.A1.A0SB.01A	EHD4__FSIP1	4.9	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.D8.A27N.01A	EHHADH__ABCC5	0.81	tier3	In-frame	A0 : B1	A0 : B0	NA
BRCA	TCGA.PL.A8LZ.01A	EHMT1__ARRDC1	0.082	tier3	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.A7.A6VY.01A	EHMT1__GRIN1	0.27	tier1	In-frame	A1 : B0	A1 : B0	NA
BRCA	TCGA.D8.A1X5.01A	EIF1__MED28	100.0	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.A2.A04P.01A	EIF2AK2__CEBPZ	0.36	tier1	Out-of-frame	A0 : B0	A0 : B0	non-validated
BRCA	TCGA.D8.A142.01A	EIF2AK2__FAM82A1	0.23	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.AR.A24L.01A	EIF2B3__HYI	100.0	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.AC.A6IW.01A	EIF2C2__PCMTD1	0.54	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.C8.A26Y.01A	EIF2C2__PTK2	7.7	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.E2.A1II.01A	EIF2C2__PTK2	7.7	tier4	Out-of-frame	A0 : B1	A0 : B0	NA
BRCA	TCGA.E2.A1LE.01A	EIF2C2__PTK2	7.7	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.GM.A2DB.01A	EIF2S1__GPHN	2.4	tier1	In-frame	A0 : B1	A0 : B0	NA
BRCA	TCGA.C8.A273.01A	EIF2S2__DEFB123	0.52	tier1	Out-of-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.E2.A1AZ.01A	EIF4E2__DIS3L2	1.5	tier2	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.BH.A0H7.01A	EIF4ENIF1__SHANK3	0.27	tier1	In-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.E2.A158.01A	EIF4G3__PPP2R3A	0.43	tier1	5UTR-CDS	A0 : B0	A0 : B0	NA
BRCA	TCGA.AN.A0FJ.01A	EIF4G3__RAP1GAP	0.063	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.A2.A0D4.01A	ELAVL1__AC011498.1	0.012	tier1	Out-of-frame	A0 : B0	A1 : B0	non-validated
BRCA	TCGA.B6.A0I1.01A	ELF5__CAT	0.057	tier1	In-frame	A0 : B0	A0 : B0	non-validated
BRCA	TCGA.AR.A251.01A	ELK3__AMDHD1	0.091	tier1	Out-of-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.A2.A04U.01A	ELL__C19orf42	4.8	tier1	Out-of-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.AC.A7VB.01A	ELL__INSR	0.37	tier1	Out-of-frame	A1 : B1	A0 : B0	NA
BRCA	TCGA.AR.A1AN.01A	ELMO2__STAP1	2.4	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.A2.A4S3.01A	ELMOD3__TCF7L1	0.28	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.AN.A0XU.01A	ELMOD3__TTC27	0.27	tier4	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.D8.A1XQ.01A	ELN__FADS2	0.011	tier3	3UTR-CDS	A0 : B0	A0 : B1	NA
BRCA	TCGA.AO.A0J3.01A	ELN__METTL2B	2.7	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.AR.A2LE.01A	ELOVL5__FAR1	2.2	tier4	NA	A0 : B0	A0 : B0	NA
BRCA	TCGA.AR.A1AI.01A	ELP2__GALNT1	0.8	tier1	CDS-5UTR	A0 : B0	A0 : B0	NA
BRCA	TCGA.A2.A0D2.01A	ELP2__MAPRE2	0.37	tier1	In-frame	A0 : B0	A0 : B0	validated
BRCA	TCGA.AC.A2QH.01A	ELP4__CFTR	0.43	tier1	In-frame	A0 : B1	A0 : B0	NA
BRCA	TCGA.B6.A0I1.01A	EML1__CCNK	2.0	tier1	CDS-5UTR	A0 : B0	A0 : B0	non-validated
BRCA	TCGA.E9.A245.01A	EML4__COX7A2L	0.6	tier1	Out-of-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.GI.A2C9.01A	EMP1__ETV6	0.75	tier1	5UTR-CDS	A0 : B0	A0 : B0	non-validated
BRCA	TCGA.A2.A0T1.01A	ENDOV__IKZF3	0.97	tier2	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.C8.A135.01A	ENDOV__SLC26A11	0.29	tier1	Out-of-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.B6.A0I6.01A	ENG__AK1	0.86	tier4	In-frame	A0 : B0	A0 : B0	non-validated
BRCA	TCGA.A8.A08G.01A	ENOX2__OSBPL5	7.1	tier1	CDS-5UTR	A0 : B0	A0 : B0	NA
BRCA	TCGA.OL.A6VO.01A	ENPP1__RIPPLY2	2.1	tier2	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.GI.A2C9.01A	EP300__IPO5	0.17	tier1	Out-of-frame	A1 : B1	A0 : B0	non-validated
BRCA	TCGA.A2.A0D0.01A	EP400__SFSWAP	0.2	tier1	Out-of-frame	A1 : B0	A1 : B0	validated
BRCA	TCGA.E2.A10C.01A	EPB41L1__BCL2A1	3.7	tier4	5UTR-CDS	A0 : B0	A0 : B0	NA
BRCA	TCGA.A8.A079.01A	EPB41L1__GHRH	0.004	tier1	5UTR-5UTR	A0 : B0	A0 : B0	NA
BRCA	TCGA.BH.A0HB.01A	EPB41L3__LAMA1	0.13	tier1	In-frame	A0 : B1	A0 : B0	NA
BRCA	TCGA.BH.A0B9.01A	EPB41L4B__PTPN3	0.15	tier1	Out-of-frame	A1 : B0	A0 : B0	validated
BRCA	TCGA.BH.A0C7.01B	EPC1__PTGR2	1.9	tier1	In-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.A8.A08F.01A	EPC2__MBD5	0.026	tier2	CDS-5UTR	A0 : B0	A0 : B0	NA
BRCA	TCGA.A2.A04P.01A	EPC2__THSD7B	2.8	tier2	In-frame	A1 : B1	A0 : B0	validated
BRCA	TCGA.LL.A7SZ.01A	EPHA6__C11orf80	4.0	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.BH.A0HW.01A	EPHA6__RG9MTD1	0.89	tier2	CDS-5UTR	A0 : B0	A0 : B0	NA
BRCA	TCGA.E9.A1NA.01A	EPHX2__BNIP3L	1.4	tier2	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.A7.A2KD.01A	EPN2__AKAP10	0.67	tier2	5UTR-CDS	A0 : B1	A0 : B0	NA
BRCA	TCGA.A7.A26I.01B	EPRS__DNAH14	0.017	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.AC.A2FM.01A	EPS15L1__BRD4	0.16	tier1	CDS-5UTR	A1 : B0	A1 : B0	NA
BRCA	TCGA.A7.A13D.01A	EPS15L1__CALR3	3.4	tier1	CDS-5UTR	A1 : B0	A0 : B0	non-validated
BRCA	TCGA.B6.A3ZX.01A	EPS15L1__CALR3	3.4	tier1	CDS-5UTR	A0 : B0	A0 : B0	NA
BRCA	TCGA.C8.A12Q.01A	EPS15L1__CLNS1A	0.008	tier1	Out-of-frame	A1 : B0	A0 : B0	non-validated
BRCA	TCGA.A1.A0SJ.01A	ERAL1__DIDO1	2.0	tier4	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.BH.A204.01A	ERBB2__CDK12	0.41	tier1	In-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.UU.A93S.01A	ERBB2__CLDN7	1.2	tier3	3UTR-5UTR	A0 : B0	A0 : B0	NA
BRCA	TCGA.AR.A254.01A	ERBB2__SLC29A3	0.032	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.A2.A0YE.01A	ERBB2__SLC39A11	0.48	tier1	CDS-5UTR	A0 : B0	A0 : B0	NA
BRCA	TCGA.GM.A2DD.01A	ERBB2IP__C5orf44	0.99	tier4	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.PE.A5DC.01A	ERBB2IP__NLN	0.018	tier1	5UTR-CDS	A0 : B0	A0 : B0	NA
BRCA	TCGA.BH.A1FD.01A	ERBB2IP__PPWD1	2.3	tier1	5UTR-CDS	A0 : B0	A0 : B0	NA
BRCA	TCGA.A2.A1FW.01A	ERBB2IP__ZBTB10	0.26	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.B6.A0IG.01A	ERC1__PIK3C2G	5.7	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.C8.A1HJ.01A	ERC1__RET	0.55	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.E2.A9RU.01A	ERC1__TACC3	0.022	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.C8.A12P.01A	ERC1__TOMM34	0.2	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.A1.A0SO.01A	ERC2__ARHGEF3	0.072	tier1	In-frame	A0 : B1	A0 : B0	NA
BRCA	TCGA.E2.A14T.01A	ERICH1__PCM1	1.0	tier1	Out-of-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.D8.A27H.01A	ESCO1__ABHD3	1.2	tier1	Out-of-frame	A0 : B0	A0 : B0	validated
BRCA	TCGA.AN.A0AR.01A	ESCO1__KANK1	1.2	tier1	5UTR-CDS	A0 : B0	A0 : B0	NA
BRCA	TCGA.A2.A3KD.01A	ESR1__ASPH	0.029	tier2	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.BH.A1EV.01A	ESR1__BNC2	1.4	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.E9.A1NA.01A	ESR1__C6orf211	0.17	tier1	5UTR-CDS	A0 : B0	A0 : B0	NA
BRCA	TCGA.A2.A0CT.01A	ESR1__C6orf97	0.35	tier1	5UTR-CDS	A0 : B0	A0 : B0	NA
BRCA	TCGA.A2.A0YG.01A	ESR1__C6orf97	0.35	tier1	5UTR-CDS	A0 : B0	A0 : B0	non-validated
BRCA	TCGA.A2.A25B.01A	ESR1__C6orf97	0.35	tier4	5UTR-CDS	A0 : B0	A0 : B0	validated
BRCA	TCGA.A2.A4S3.01A	ESR1__C6orf97	0.35	tier1	5UTR-CDS	A0 : B0	A0 : B0	NA
BRCA	TCGA.A7.A4SC.01A	ESR1__C6orf97	0.35	tier1	5UTR-CDS	A0 : B0	A0 : B0	NA
BRCA	TCGA.AC.A8OS.01A	ESR1__C6orf97	0.35	tier1	5UTR-CDS	A0 : B0	A0 : B0	NA
BRCA	TCGA.AR.A24R.01A	ESR1__C6orf97	0.35	tier1	Out-of-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.BH.A0B1.01A	ESR1__C6orf97	0.35	tier1	5UTR-CDS	A0 : B0	A0 : B0	NA
BRCA	TCGA.BH.A0C0.01A	ESR1__C6orf97	0.35	tier2	5UTR-CDS	A0 : B0	A0 : B0	NA
BRCA	TCGA.BH.A0HY.01A	ESR1__C6orf97	0.35	tier1	5UTR-CDS	A0 : B0	A0 : B0	NA
BRCA	TCGA.BH.A18R.01A	ESR1__C6orf97	0.35	tier1	5UTR-CDS	A0 : B0	A0 : B0	validated
BRCA	TCGA.D8.A1JP.01A	ESR1__C6orf97	0.35	tier1	5UTR-CDS	A0 : B0	A0 : B0	NA
BRCA	TCGA.D8.A1XA.01A	ESR1__C6orf97	0.35	tier2	5UTR-CDS	A0 : B0	A0 : B0	NA
BRCA	TCGA.D8.A27N.01A	ESR1__C6orf97	0.35	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.BH.A5J0.01A	ESR1__MTHFD1L	0.83	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.A8.A06Q.01A	ESR1__USP25	1.2	tier1	Out-of-frame	A0 : B1	A0 : B1	NA
BRCA	TCGA.A2.A0EY.01A	ESRP2__SLC7A6	0.13	tier1	In-frame	A0 : B0	A0 : B0	non-validated
BRCA	TCGA.B6.A0IQ.01A	ESRRG__ACBD3	2.5	tier3	In-frame	A0 : B1	A0 : B0	non-validated
BRCA	TCGA.C8.A12L.01A	ESRRG__ADCY10	1.0	tier1	5UTR-CDS	A0 : B0	A0 : B0	non-validated
BRCA	TCGA.AQ.A04L.01B	ESYT2__C7orf58	0.33	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.E9.A5UO.01A	ETFA__STRA6	0.14	tier1	CDS-5UTR	A0 : B0	A0 : B0	NA
BRCA	TCGA.B6.A0RT.01A	ETFB__LIM2	0.55	tier1	Out-of-frame	A0 : B0	A0 : B0	non-validated
BRCA	TCGA.OL.A5RZ.01A	ETNK1__RCAN2	3.3	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.A2.A0T3.01A	ETV4__CCL16	0.13	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.AO.A03U.01B	ETV6__NTRK3	5.5	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.EW.A1PB.01A	ETV6__YTHDF2	0.8	tier1	Out-of-frame	A1 : B0	A0 : B0	validated
BRCA	TCGA.E9.A1R6.01A	EVC__WDR60	0.95	tier3	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.AQ.A54N.01A	EVI5L__VAV1	0.032	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.A2.A4S3.01A	EVL__EML1	0.6	tier1	In-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.E2.A109.01A	EVPL__MAP2K6	0.12	tier1	Out-of-frame	A1 : B0	A0 : B0	validated
BRCA	TCGA.C8.A12U.01A	EXOC2__SH3RF3	1.7	tier1	5UTR-CDS	A0 : B1	A0 : B0	NA
BRCA	TCGA.AR.A256.01A	EXOC4__SLC25A13	1.7	tier1	In-frame	A0 : B0	A0 : B0	non-validated
BRCA	TCGA.A7.A13D.01A	EXOC6B__SFXN5	0.87	tier1	In-frame	A0 : B0	A0 : B0	non-validated
BRCA	TCGA.C8.A26Y.01A	EXOC6B__SFXN5	0.87	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.EW.A2FS.01A	EXOC7__USP22	0.25	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.BH.A1EN.01A	EXT1__RSF1	0.28	tier1	In-frame	A0 : B1	A0 : B1	NA
BRCA	TCGA.A7.A6VY.01A	EXT1__SAMD12	0.75	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.B6.A0X7.01A	EXT2__ALX4	2.5	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.A7.A13E.01A	EXTL3__TMEM66	0.5	tier1	5UTR-CDS	A0 : B0	A0 : B0	NA
BRCA	TCGA.BH.A18V.01A	EYA3__KIAA0247	0.002	tier1	CDS-5UTR	A0 : B0	A0 : B0	NA
BRCA	TCGA.BH.A18V.06A	EYA3__KIAA0247	0.002	tier1	CDS-5UTR	A0 : B0	A0 : B0	NA
BRCA	TCGA.A2.A04P.01A	EYA3__POP4	0.046	tier2	In-frame	A0 : B0	A0 : B0	non-validated
BRCA	TCGA.B6.A0IG.01A	EZH1__TOP2A	0.079	tier2	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.A2.A0CY.01A	EZR__RB1CC1	0.73	tier1	Out-of-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.E9.A1R7.01A	FAF1__HCRTR1	1.1	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.EW.A3U0.01A	FAF1__HOOK1	0.26	tier1	In-frame	A0 : B0	A0 : B0	non-validated
BRCA	TCGA.BH.A209.01A	FAF1__LRRC7	1.0	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.BH.A1FC.01A	FAF1__NFIA	0.42	tier4	Out-of-frame	A0 : B0	A0 : B0	non-validated
BRCA	TCGA.BH.A0DX.01A	FAF1__PTRH2	0.32	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.A8.A09A.01A	FAM102A__NAIF1	0.5	tier3	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.OL.A66P.01A	FAM111B__GLYATL1	0.89	tier1	Out-of-frame	A1 : B0	A1 : B0	NA
BRCA	TCGA.B6.A0IG.01A	FAM111B__MS4A5	1.1	tier2	In-frame	A1 : B0	A1 : B0	NA
BRCA	TCGA.AO.A129.01A	FAM114A1__IQCE	3.5	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.BH.A1F0.01A	FAM117B__ATIC	0.011	tier1	In-frame	A0 : B1	A0 : B0	NA
BRCA	TCGA.AR.A24W.01A	FAM122B__GPC4	0.062	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.A8.A08X.01A	FAM129B__OLFM1	0.36	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.A2.A04T.01A	FAM129B__PYROXD1	1.8	tier2	Out-of-frame	A0 : B0	A0 : B0	non-validated
BRCA	TCGA.A8.A08X.01A	FAM129B__SEC16A	0.1	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.AO.A0JM.01A	FAM131A__NAA50	1.6	tier1	CDS-5UTR	A0 : B0	A0 : B0	validated
BRCA	TCGA.AO.A03P.01A	FAM149B1__KCNMA1	1.3	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.E9.A1R7.01A	FAM157A__C9	100.0	tier3	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.AN.A0XN.01A	FAM160A1__DDX60	3.5	tier1	5UTR-CDS	A0 : B0	A0 : B0	NA
BRCA	TCGA.AN.A04C.01A	FAM160A1__IL15	0.081	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.A8.A08I.01A	FAM168A__DNAJB13	0.49	tier1	5UTR-CDS	A0 : B0	A0 : B0	NA
BRCA	TCGA.AR.A24Z.01A	FAM168A__PTCRA	0.08	tier1	5UTR-CDS	A0 : B0	A0 : B0	non-validated
BRCA	TCGA.A2.A0CY.01A	FAM168A__RAB6A	0.019	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.AC.A3QQ.01A	FAM168A__SLC13A2	0.7	tier2	5UTR-CDS	A0 : B0	A0 : B0	NA
BRCA	TCGA.E2.A15A.01A	FAM168A__UVRAG	1.1	tier1	5UTR-CDS	A0 : B1	A0 : B0	NA
BRCA	TCGA.D8.A1XZ.01A	FAM172A__EFNA5	0.82	tier1	5UTR-CDS	A0 : B0	A0 : B0	NA
BRCA	TCGA.A7.A26F.01A	FAM172A__KIAA0825	0.79	tier1	CDS-5UTR	A0 : B0	A0 : B0	NA
BRCA	TCGA.E9.A1NA.01A	FAM172A__KIAA0825	0.79	tier3	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.C8.A132.01A	FAM177A1__IQSEC3	0.24	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.A7.A26G.01A	FAM190A__MMRN1	1.1	tier4	Out-of-frame	A0 : B1	A0 : B0	non-validated
BRCA	TCGA.A8.A07O.01A	FAM190A__MMRN1	1.1	tier1	5UTR-CDS	A0 : B0	A0 : B0	NA
BRCA	TCGA.BH.A0RX.01A	FAM192A__C16orf62	0.1	tier1	5UTR-CDS	A0 : B0	A0 : B0	NA
BRCA	TCGA.C8.A12U.01A	FAM19A2__KCNMB4	2.4	tier1	5UTR-CDS	A0 : B0	A0 : B0	NA
BRCA	TCGA.E2.A9RU.01A	FAM19A2__OOEP	0.51	tier1	5UTR-CDS	A0 : B0	A0 : B0	NA
BRCA	TCGA.A2.A0CX.01A	FAM19A4__CACNA2D3	0.3	tier1	5UTR-CDS	A0 : B0	A0 : B0	NA
BRCA	TCGA.BH.A0BF.01A	FAM36A__SDCCAG8	0.24	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.A8.A09M.01A	FAM38A__APRT	0.018	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.A8.A06Z.01A	FAM49B__ASAP1	0.47	tier1	5UTR-CDS	A0 : B0	A0 : B0	NA
BRCA	TCGA.AO.A0J5.01A	FAM49B__KAT6A	0.73	tier1	Out-of-frame	A0 : B0	A1 : B0	NA
BRCA	TCGA.E2.A1IN.01A	FAM53B__SGK2	1.5	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.A7.A4SE.01A	FAM59A__GTF2H1	0.21	tier2	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.EW.A2FW.01A	FAM69A__NTNG1	5.2	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.A8.A07L.01A	FAM73B__NUP188	0.22	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.E9.A22A.01A	FAM82B__AKAP6	0.95	tier1	CDS-3UTR	A0 : B0	A0 : B0	NA
BRCA	TCGA.AR.A0TY.01A	FAM82B__ESRP1	0.41	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.AN.A0FJ.01A	FAM83D__SF3B3	0.014	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.BH.A0H7.01A	FAM83D__SPECC1L	2.0	tier1	In-frame	A0 : B1	A0 : B0	NA
BRCA	TCGA.D8.A1JA.01A	FAM83G__TTC19	0.19	tier3	Out-of-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.AN.A0AM.01A	FAM96A__SNX1	1.1	tier1	Out-of-frame	A0 : B1	A0 : B0	NA
BRCA	TCGA.OL.A5RW.01A	FAM98B__RASGRP1	0.79	tier2	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.D8.A1JM.01A	FANCD2__MTMR14	1.6	tier1	In-frame	A1 : B0	A1 : B0	NA
BRCA	TCGA.E2.A154.01A	FARP1__SIAE	1.0	tier3	3UTR-5UTR	A0 : B0	A0 : B0	NA
BRCA	TCGA.E9.A1NA.01A	FARS2__RREB1	2.0	tier1	Out-of-frame	A0 : B1	A0 : B0	NA
BRCA	TCGA.E9.A247.01A	FAS__CTNND2	0.006	tier2	In-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.A2.A0T1.01A	FBXL20__ABCA6	2.0	tier2	In-frame	A0 : B1	A0 : B0	NA
BRCA	TCGA.A7.A13D.01A	FBXL20__C17orf37	0.37	tier1	Out-of-frame	A0 : B0	A0 : B0	non-validated
BRCA	TCGA.3C.AALI.01A	FBXL20__CEP95	1.0	tier1	In-frame	A0 : B1	A0 : B0	NA
BRCA	TCGA.A1.A0SM.01A	FBXL20__GDPD5	1.5	tier1	In-frame	A0 : B0	A0 : B0	non-validated
BRCA	TCGA.AC.A2FF.01A	FBXL20__LRSAM1	0.36	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.A2.A1G1.01A	FBXL20__MSL1	0.037	tier2	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.E2.A15M.01A	FBXL20__MSL1	0.037	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.A8.A08S.01A	FBXL20__MYO1D	0.16	tier1	Out-of-frame	A0 : B1	A0 : B0	non-validated
BRCA	TCGA.AR.A254.01A	FBXL20__NOTCH2	0.35	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.3C.AALI.01A	FBXL20__PITPNC1	0.78	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.OL.A5RZ.01A	FBXL20__PPM1E	0.69	tier1	In-frame	A0 : B1	A0 : B0	NA
BRCA	TCGA.A2.A0EY.01A	FBXL20__SIRT6	0.17	tier2	Out-of-frame	A0 : B0	A0 : B0	non-validated
BRCA	TCGA.AR.A254.01A	FBXL20__SOCS7	0.79	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.A8.A076.01A	FBXL20__TANC2	0.008	tier2	CDS-5UTR	A0 : B0	A0 : B0	NA
BRCA	TCGA.E2.A2P6.01A	FBXL3__KLF5	0.13	tier1	5UTR-CDS	A0 : B0	A0 : B0	NA
BRCA	TCGA.A2.A0EX.01A	FBXO16__ADAM32	1.5	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.A7.A0CG.01A	FBXO22__SNX33	0.99	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.BH.A0BZ.01A	FBXO38__SPINK6	100.0	tier1	NA	A0 : B0	A0 : B0	NA
BRCA	TCGA.AC.A2FO.01A	FBXO42__RUNX1	0.003	tier1	5UTR-CDS	A0 : B0	A0 : B0	NA
BRCA	TCGA.BH.A0H7.01A	FBXO46__SYMPK	0.13	tier1	5UTR-CDS	A0 : B0	A0 : B0	NA
BRCA	TCGA.C8.A8HR.01A	FBXW2__LTBP2	0.048	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.B6.A0I6.01A	FBXW4__MGEA5	0.45	tier4	Out-of-frame	A0 : B0	A0 : B0	non-validated
BRCA	TCGA.D8.A1JG.01B	FBXW7__TMEM154	0.003	tier1	5UTR-CDS	A0 : B0	A0 : B0	NA
BRCA	TCGA.B6.A0RH.01A	FBXW8__CHST11	0.95	tier2	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.BH.A1EV.01A	FCGR2A__SPTA1	2.5	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.GM.A2DF.01A	FCHSD2__C11orf83	1.3	tier1	CDS-5UTR	A0 : B0	A0 : B0	non-validated
BRCA	TCGA.BH.A18I.01A	FCHSD2__CPT1A	2.9	tier1	5UTR-CDS	A0 : B0	A0 : B1	NA
BRCA	TCGA.A8.A093.01A	FCHSD2__DTX4	0.074	tier2	Out-of-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.D8.A140.01A	FCHSD2__FAM168A	0.096	tier1	CDS-5UTR	A0 : B0	A0 : B0	NA
BRCA	TCGA.A8.A07E.01A	FCHSD2__PLEKHB1	0.11	tier3	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.C8.A1HO.01A	FCHSD2__RALYL	1.5	tier3	In-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.BH.A201.01A	FCHSD2__RNF169	0.36	tier1	Out-of-frame	A0 : B1	A0 : B0	NA
BRCA	TCGA.B6.A0RL.01A	FCHSD2__SHANK2	0.41	tier1	Out-of-frame	A0 : B1	A0 : B0	NA
BRCA	TCGA.EW.A6SC.01A	FCHSD2__SHANK2	0.41	tier1	Out-of-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.E2.A15K.01A	FDFT1__INTS9	2.6	tier1	Out-of-frame	A1 : B0	A1 : B0	validated
BRCA	TCGA.E2.A15K.06A	FDFT1__INTS9	2.6	tier1	Out-of-frame	A1 : B0	A1 : B0	validated
BRCA	TCGA.AO.A0J2.01A	FDFT1__NEIL2	0.72	tier1	Out-of-frame	A1 : B0	A1 : B0	validated
BRCA	TCGA.E2.A109.01A	FERMT1__FAM18B2	0.064	tier1	Out-of-frame	A1 : B0	A0 : B0	non-validated
BRCA	TCGA.A2.A0CM.01A	FERMT1__MCM8	0.056	tier2	In-frame	A0 : B1	A0 : B0	non-validated
BRCA	TCGA.BH.A203.01A	FERMT1__RBBP8	0.6	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.E2.A1LL.01A	FGD4__ABCC9	0.005	tier1	5UTR-CDS	A0 : B0	A0 : B0	non-validated
BRCA	TCGA.E9.A5UO.01A	FGD6__NUP37	1.5	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.AR.A0TP.01A	FGF12__SYN3	0.097	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.A2.A04U.01A	FGF13__NLRP3	1.4	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.E2.A574.01A	FGFR1__ADAM18	1.8	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.A8.A06R.01A	FGFR1OP__MCM9	0.2	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.D8.A13Z.01A	FGFR2__CCDC6	0.28	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.LD.A7W5.01A	FGFR2__ENPP2	0.15	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.D8.A4Z1.01A	FGGY__CDH17	0.27	tier3	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.OL.A5RZ.01A	FGGY__RPS6KA1	0.81	tier2	Out-of-frame	A0 : B1	A0 : B0	NA
BRCA	TCGA.AO.A124.01A	FIG4__WASF1	1.2	tier4	Out-of-frame	A0 : B0	A0 : B0	non-validated
BRCA	TCGA.BH.A203.01A	FIG4__WASF1	1.2	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.OL.A5D7.01A	FIP1L1__SBNO2	0.13	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.D8.A1Y0.01A	FLNA__TKTL1	2.9	tier1	5UTR-CDS	A0 : B0	A0 : B0	NA
BRCA	TCGA.A2.A0SX.01A	FLNB__SLMAP	0.66	tier1	In-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.A8.A07C.01A	FLNB__SLMAP	0.66	tier1	In-frame	A1 : B0	A1 : B0	NA
BRCA	TCGA.A2.A25B.01A	FLOT2__PEX12	0.87	tier4	Out-of-frame	A1 : B0	A1 : B0	non-validated
BRCA	TCGA.A8.A097.01A	FN1__EIF2AK2	0.92	tier4	NA	A0 : B0	A0 : B0	NA
BRCA	TCGA.C8.A12K.01A	FNDC3A__RB1	1.1	tier2	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.AO.A03P.01A	FNDC3B__NLGN1	0.016	tier1	Out-of-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.AC.A6IW.01A	FNDC3B__UCK2	1.3	tier1	5UTR-CDS	A0 : B0	A0 : B0	NA
BRCA	TCGA.AO.A1KR.01A	FNIP2__LARP7	0.57	tier4	In-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.BH.A0H7.01A	FNIP2__LRBA	0.73	tier1	Out-of-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.A7.A3IZ.01A	FNTA__OVOL1	0.69	tier1	Out-of-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.A2.A0EW.01A	FNTA__ZMAT4	2.0	tier1	CDS-5UTR	A0 : B0	A0 : B0	NA
BRCA	TCGA.BH.A1FD.01A	FOSL2__BRE	0.036	tier3	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.E2.A1LS.01A	FOXJ3__ELAVL4	0.76	tier3	Out-of-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.AR.A24Z.01A	FOXJ3__ZFYVE9	0.94	tier1	CDS-5UTR	A0 : B0	A0 : B0	non-validated
BRCA	TCGA.E9.A1R7.01A	FOXJ3__ZNF362	0.17	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.S3.AA10.01A	FOXK1__ZNF671	3.4	tier2	Out-of-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.D8.A27N.01A	FOXK2__ABCA5	0.041	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.B6.A3ZX.01A	FOXK2__MADCAM1	0.29	tier1	Out-of-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.C8.A1HO.01A	FOXK2__PITPNC1	0.39	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.AO.A0JG.01A	FOXK2__SKAP1	1.0	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.A8.A08O.01A	FOXK2__TIAF1	0.5	tier1	CDS-5UTR	A0 : B0	A0 : B0	NA
BRCA	TCGA.AR.A1AU.01A	FOXO3__CHD7	0.018	tier2	CDS-5UTR	A0 : B0	A0 : B0	NA
BRCA	TCGA.HN.A2NL.01A	FOXP1__ARMC8	0.35	tier2	In-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.BH.A1FE.01A	FOXP1__C5orf51	1.3	tier1	5UTR-CDS	A0 : B0	A0 : B0	NA
BRCA	TCGA.A7.A3J0.01A	FOXP1__EIF4E3	0.45	tier4	5UTR-CDS	A0 : B0	A0 : B0	NA
BRCA	TCGA.BH.A18V.01A	FOXP1__EIF4E3	0.45	tier1	5UTR-5UTR	A0 : B0	A0 : B0	NA
BRCA	TCGA.BH.A18V.06A	FOXP1__EIF4E3	0.45	tier1	5UTR-5UTR	A0 : B0	A0 : B0	NA
BRCA	TCGA.E9.A1RB.01A	FOXP1__EIF4E3	0.45	tier1	5UTR-CDS	A0 : B0	A0 : B0	NA
BRCA	TCGA.BH.A0BR.01A	FOXP1__RGAG4	1.1	tier1	5UTR-3UTR	A0 : B0	A0 : B0	NA
BRCA	TCGA.E2.A14Q.01A	FRAS1__DCK	1.2	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.D8.A1JA.01A	FRAS1__FAM190A	0.018	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.AQ.A1H2.01A	FRK__DTNBP1	2.4	tier1	Out-of-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.AN.A0AT.01A	FRMD5__EIF2C3	2.3	tier1	Out-of-frame	A1 : B0	A0 : B0	non-validated
BRCA	TCGA.B6.A0I1.01A	FRMD8__MAST1	0.19	tier1	Out-of-frame	A0 : B1	A0 : B0	non-validated
BRCA	TCGA.A8.A06Z.01A	FRS2__LYZ	1.3	tier1	5UTR-CDS	A0 : B0	A0 : B0	NA
BRCA	TCGA.A8.A07O.01A	FRS2__LYZ	1.3	tier1	5UTR-CDS	A0 : B0	A0 : B0	NA
BRCA	TCGA.AN.A0AM.01A	FRS2__NRG3	0.22	tier1	5UTR-CDS	A0 : B1	A0 : B0	NA
BRCA	TCGA.BH.A1EV.01A	FRS2__OSBPL8	0.15	tier1	5UTR-CDS	A0 : B0	A0 : B0	NA
BRCA	TCGA.C8.A12M.01A	FRS2__TSPAN8	0.11	tier1	5UTR-5UTR	A0 : B0	A0 : B0	NA
BRCA	TCGA.OL.A5D7.01A	FRYL__DTD1	2.0	tier1	In-frame	A1 : B0	A1 : B0	NA
BRCA	TCGA.BH.A0HU.01A	FRYL__ZNF606	0.15	tier1	5UTR-CDS	A0 : B0	A0 : B0	NA
BRCA	TCGA.B6.A0I9.01A	FSD1L__ADAMTS13	4.7	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.AR.A24V.01A	FSTL4__SLIT3	0.54	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.AR.A0U4.01A	FTSJ3__SCN4A	0.007	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.LL.A73Y.01A	FUBP1__LRRC7	0.048	tier1	CDS-5UTR	A1 : B0	A0 : B0	NA
BRCA	TCGA.AR.A1AR.01A	FUBP1__SLC44A5	1.4	tier1	Out-of-frame	A1 : B1	A1 : B0	NA
BRCA	TCGA.D8.A1XU.01A	FUS__CHD1	0.035	tier4	NA	A0 : B0	A0 : B0	NA
BRCA	TCGA.AR.A250.01A	FUT10__GAB2	0.068	tier1	In-frame	A0 : B1	A0 : B0	NA
BRCA	TCGA.C8.A26Z.01A	FUT8__AGBL4	0.73	tier1	5UTR-CDS	A0 : B0	A0 : B0	NA
BRCA	TCGA.AO.A0J5.01A	FUT8__FNTB	0.47	tier1	5UTR-CDS	A0 : B1	A0 : B0	NA
BRCA	TCGA.C8.A135.01A	FXR1__RIMS2	0.93	tier3	Out-of-frame	A1 : B0	A1 : B0	NA
BRCA	TCGA.BH.A0W3.01A	FZD4__LAMTOR1	0.35	tier2	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.AC.A5XU.01A	FZR1__NFIC	0.088	tier2	5UTR-CDS	A0 : B0	A0 : B0	NA
BRCA	TCGA.JL.A3YW.01A	FZR1__NFIC	0.088	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.AC.A2BM.01A	G3BP1__GLRA1	2.3	tier3	5UTR-CDS	A0 : B0	A0 : B0	NA
BRCA	TCGA.3C.AAAU.01A	G3BP2__PTPN1	0.61	tier1	5UTR-CDS	A0 : B1	A0 : B0	NA
BRCA	TCGA.BH.A0B5.01A	G6PD__F8	0.85	tier1	In-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.3C.AAAU.01A	GAB2__CHKA	0.045	tier1	NA	A0 : B0	A0 : B0	NA
BRCA	TCGA.A1.A0SM.01A	GAB2__MYO7A	0.13	tier2	In-frame	A1 : B0	A0 : B0	non-validated
BRCA	TCGA.BH.A0HY.01A	GAB2__ODZ4	0.25	tier1	CDS-5UTR	A1 : B0	A0 : B0	NA
BRCA	TCGA.A1.A0SM.01A	GAB2__PLXDC1	0.39	tier2	Out-of-frame	A1 : B0	A0 : B0	non-validated
BRCA	TCGA.A2.A0CL.01A	GAB2__THRSP	0.88	tier1	CDS-3UTR	A1 : B0	A0 : B0	NA
BRCA	TCGA.C8.A12T.01A	GABPB1__GALK2	1.2	tier1	5UTR-CDS	A0 : B0	A0 : B0	NA
BRCA	TCGA.E9.A22G.01A	GABRG3__OCA2	0.79	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.A8.A07R.01A	GAK__MAGI1	0.018	tier1	In-frame	A1 : B1	A0 : B0	NA
BRCA	TCGA.A7.A4SD.01A	GALNT10__C5orf4	0.69	tier3	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.AC.A6IW.01A	GALNT10__IQCA1	0.7	tier2	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.E2.A15A.01A	GALNT11__FKBP3	0.16	tier1	5UTR-CDS	A0 : B0	A0 : B0	NA
BRCA	TCGA.E2.A15A.06A	GALNT11__FKBP3	0.16	tier1	5UTR-CDS	A0 : B0	A0 : B0	NA
BRCA	TCGA.AO.A12E.01A	GALNT11__PRKAG2	1.1	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.AN.A0FJ.01A	GALNT14__FAM98A	0.95	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.A8.A079.01A	GALNT2__KIF26B	0.33	tier1	In-frame	A0 : B1	A0 : B0	NA
BRCA	TCGA.PE.A5DC.01A	GALNTL1__DOCK1	0.22	tier2	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.AR.A24Q.01A	GALNTL4__DENND5B	100.0	tier2	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.C8.A12Q.01A	GALNTL4__PPP1R1B	0.16	tier1	Out-of-frame	A0 : B1	A0 : B0	non-validated
BRCA	TCGA.A7.A13D.01B	GANAB__ZNF76	0.38	tier2	CDS-5UTR	A0 : B0	A0 : B0	validated
BRCA	TCGA.A8.A08P.01A	GAS8__SPIRE2	0.37	tier1	In-frame	A0 : B1	A0 : B0	NA
BRCA	TCGA.AR.A1AP.01A	GATA3__TAF3	0.53	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.AC.A5XU.01A	GATAD2A__PRKACA	0.16	tier1	Out-of-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.B6.A0I1.01A	GATAD2B__NUP210L	0.45	tier1	5UTR-CDS	A0 : B0	A0 : B0	non-validated
BRCA	TCGA.E2.A10A.01A	GATAD2B__SLC9A11	0.34	tier2	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.B6.A0RU.01A	GBA__SCAMP3	0.011	tier1	5UTR-CDS	A0 : B0	A0 : B0	non-validated
BRCA	TCGA.C8.A12U.01A	GBA2__ATP6V1C1	0.22	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.AO.A128.01A	GCFC1__ABI3BP	0.023	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.BH.A0EE.01A	GCFC1__ADAMTS1	0.66	tier3	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.AR.A1AO.01A	GCFC1__TP53I3	0.99	tier3	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.EW.A6SD.01A	GCNT2__PDE4B	2.6	tier3	CDS-5UTR	A0 : B0	A0 : B0	NA
BRCA	TCGA.A2.A0YE.01A	GDAP2__ADORA3	0.68	tier4	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.A8.A07L.01A	GDAP2__SPAG17	0.71	tier1	5UTR-CDS	A0 : B0	A0 : B0	NA
BRCA	TCGA.A7.A56D.01A	GDPD1__SMG8	4.6	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.C8.A12Q.01A	GFM1__MLF1	1.0	tier1	In-frame	A0 : B1	A0 : B0	non-validated
BRCA	TCGA.EW.A1PF.01A	GFOD1__BCAS1	0.16	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.AO.A0JG.01A	GFOD1__CYP39A1	0.68	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.AQ.A04L.01B	GFRA1__DGKB	0.68	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.GM.A2DL.01A	GGA3__ATF7	0.022	tier1	CDS-3UTR	A0 : B0	A0 : B0	NA
BRCA	TCGA.AN.A0FX.01A	GGT6__AC091153.1	0.031	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.AR.A256.01A	GIGYF2__CHRND	0.59	tier2	In-frame	A1 : B0	A1 : B0	validated
BRCA	TCGA.E9.A1NA.01A	GIGYF2__DIS3L2	0.023	tier1	In-frame	A1 : B1	A1 : B0	NA
BRCA	TCGA.A8.A07U.01A	GIGYF2__EFHD1	2.2	tier1	In-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.B6.A0IJ.01A	GIGYF2__EFHD1	2.2	tier1	In-frame	A1 : B0	A1 : B0	non-validated
BRCA	TCGA.D8.A140.01A	GIGYF2__EIF4E2	0.99	tier1	In-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.E9.A54Y.01A	GINS4__UQCRC2	0.36	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.PL.A8LZ.01A	GK5__CENPL	1.0	tier1	CDS-5UTR	A0 : B0	A0 : B0	NA
BRCA	TCGA.A2.A0CL.01A	GK5__MBNL1	0.22	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.S3.A6ZF.01A	GLA__HNRNPH2	0.36	tier2	CDS-5UTR	A0 : B0	A0 : B0	NA
BRCA	TCGA.A8.A09C.01A	GLCE__NOX5	1.8	tier2	5UTR-5UTR	A0 : B0	A0 : B0	NA
BRCA	TCGA.A8.A09C.01A	GLCE__SPESP1	0.073	tier2	5UTR-CDS	A0 : B0	A0 : B0	NA
BRCA	TCGA.BH.A1F8.01A	GLG1__COG4	0.94	tier1	In-frame	A1 : B1	A0 : B0	NA
BRCA	TCGA.A2.A1FW.01A	GLRX3__C10orf11	100.0	tier2	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.A1.A0SJ.01A	GLUL__DDX27	0.13	tier3	NA	A0 : B0	A0 : B0	NA
BRCA	TCGA.B6.A0IM.01A	GLUL__EIF2AK2	0.14	tier3	NA	A0 : B0	A0 : B0	NA
BRCA	TCGA.D8.A1XS.01A	GLUL__NDUFV1	3.3	tier3	NA	A0 : B0	A0 : B0	NA
BRCA	TCGA.OL.A5D7.01A	GLYCTK__ALAS1	0.026	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.B6.A0I1.01A	GMDS__C6orf186	0.84	tier1	In-frame	A0 : B0	A0 : B0	non-validated
BRCA	TCGA.A8.A08X.01A	GMDS__DNAH8	0.073	tier2	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.AC.A8OQ.01A	GMEB2__STMN3	0.009	tier1	In-frame	A0 : B1	A0 : B0	NA
BRCA	TCGA.A8.A08P.01A	GMPR__C8orf38	0.48	tier1	CDS-5UTR	A0 : B0	A0 : B0	NA
BRCA	TCGA.E9.A1N6.01A	GNA12__ADSS	0.12	tier1	In-frame	A0 : B1	A0 : B0	NA
BRCA	TCGA.A2.A4RW.01A	GNA14__C9orf156	1.1	tier3	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.AR.A24Q.01A	GNAI3__CASQ2	0.3	tier1	Out-of-frame	A1 : B1	A1 : B0	NA
BRCA	TCGA.AN.A0AL.01A	GNAI3__KIAA1324	0.39	tier3	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.E2.A14P.01A	GNAI3__SARS	2.6	tier1	In-frame	A1 : B0	A1 : B1	non-validated
BRCA	TCGA.AO.A03V.01A	GNAL__CSNK1E	0.18	tier2	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.E2.A159.01A	GNAQ__C9orf64	2.0	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.BH.A0H7.01A	GNB1L__DNTTIP1	0.025	tier1	5UTR-CDS	A0 : B0	A0 : B0	NA
BRCA	TCGA.EW.A1P0.01A	GNB5__PDE6D	1.6	tier2	NA	A0 : B0	A0 : B0	NA
BRCA	TCGA.A2.A25F.01A	GNE__ERP27	0.009	tier1	In-frame	A0 : B0	A1 : B0	NA
BRCA	TCGA.AC.A5XU.01A	GNG7__ARHGEF18	0.25	tier1	5UTR-CDS	A0 : B1	A0 : B0	NA
BRCA	TCGA.AR.A0TS.01A	GNL2__DNAH3	0.3	tier1	Out-of-frame	A0 : B1	A0 : B0	NA
BRCA	TCGA.AR.A2LR.01A	GNPDA2__GRID2	0.29	tier1	5UTR-CDS	A0 : B0	A0 : B0	NA
BRCA	TCGA.GM.A2DF.01A	GOLGA4__HSPA8	0.68	tier1	In-frame	A1 : B1	A0 : B1	non-validated
BRCA	TCGA.BH.A0B9.01A	GOLGA4__MLH1	0.063	tier1	In-frame	A0 : B0	A0 : B0	non-validated
BRCA	TCGA.EW.A3U0.01A	GOLGB1__CCDC58	0.081	tier1	In-frame	A0 : B0	A0 : B0	non-validated
BRCA	TCGA.OL.A66P.01A	GOLGB1__IQCB1	0.002	tier3	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.EW.A1OW.01A	GON4L__IQGAP3	0.47	tier1	In-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.A2.A1FW.01A	GON4L__PIPOX	0.19	tier1	In-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.BH.A18R.01A	GOPC__ABLIM1	0.36	tier1	In-frame	A0 : B0	A0 : B0	non-validated
BRCA	TCGA.A8.A07B.01A	GPATCH8__NPLOC4	0.11	tier1	In-frame	A1 : B1	A0 : B0	validated
BRCA	TCGA.C8.A8HQ.01A	GPBP1L1__TRAPPC9	0.17	tier1	5UTR-CDS	A0 : B0	A0 : B0	NA
BRCA	TCGA.E9.A1NA.01A	GPC4__GPC3	0.003	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.E9.A1NA.01A	GPNMB__NUPL2	2.2	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.AN.A0AL.01A	GPR107__VPS13A	0.33	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.E9.A1RE.01A	GPR126__CLSTN2	0.1	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.A2.A0EY.01A	GPR137C__FERMT2	1.6	tier1	Out-of-frame	A0 : B0	A0 : B0	non-validated
BRCA	TCGA.E9.A229.01A	GPR157__GON4L	1.5	tier1	Out-of-frame	A0 : B1	A0 : B0	NA
BRCA	TCGA.C8.A1HO.01A	GPR158__MYO16	0.14	tier1	In-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.AO.A03V.01A	GPR35__MELK	0.19	tier2	5UTR-CDS	A0 : B0	A0 : B0	NA
BRCA	TCGA.AO.A0JA.01A	GPR98__ATR	0.47	tier2	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.B6.A0I8.01A	GPR98__POLR3G	0.19	tier4	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.S3.AA0Z.01A	GPRC5B__C16orf96	0.56	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.E9.A22G.01A	GRB10__SLC2A13	0.39	tier1	In-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.BH.A202.01A	GRB7__PGAP3	0.21	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.A8.A06Q.01A	GREB1L__CEP192	1.7	tier4	5UTR-CDS	A0 : B0	A0 : B0	NA
BRCA	TCGA.AN.A0AJ.01A	GRHL2__C10orf58	1.3	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.A2.A0EQ.01A	GRHL2__PAGE3	0.011	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.C8.A12U.01A	GRHL2__TRAPPC9	0.84	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.AN.A0AJ.01A	GRHL2__TSPAN14	0.3	tier1	CDS-5UTR	A0 : B0	A0 : B0	NA
BRCA	TCGA.AR.A0TV.01A	GRHL2__ZFHX4	0.22	tier2	CDS-5UTR	A0 : B0	A0 : B0	NA
BRCA	TCGA.AO.A03P.01A	GRID1__PGPEP1L	1.1	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.OL.A5DA.01A	GRIK2__CDKAL1	0.57	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.EW.A1P1.01A	GRIK4__TMPRSS4	1.0	tier3	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.D8.A1XK.01A	GRINL1A__LPHN1	1.2	tier1	5UTR-CDS	A0 : B0	A0 : B0	NA
BRCA	TCGA.D8.A1X6.01A	GRN__NCALD	0.007	tier3	3UTR-5UTR	A0 : B0	A0 : B0	NA
BRCA	TCGA.GI.A2C9.01A	GSK3B__C3orf15	0.029	tier1	Out-of-frame	A1 : B0	A0 : B0	non-validated
BRCA	TCGA.E2.A14P.01A	GSK3B__FSTL1	0.039	tier1	In-frame	A1 : B0	A0 : B0	non-validated
BRCA	TCGA.BH.A0W7.01A	GSK3B__GPR156	4.3	tier1	CDS-5UTR	A0 : B0	A0 : B0	NA
BRCA	TCGA.A2.A04Y.01A	GSK3B__LSAMP	0.14	tier2	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.A7.A4SC.01A	GSN__UVRAG	0.44	tier4	3UTR-CDS	A0 : B0	A0 : B0	NA
BRCA	TCGA.A2.A0T4.01A	GSTA4__NADSYN1	1.6	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.AR.A254.01A	GTF2B__BPI	0.48	tier1	In-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.BH.A1FD.01A	GTF2B__CCBL2	1.2	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.S3.AA12.01A	GTF2E2__EIF4EBP1	100.0	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.S3.AA12.01A	GTF2E2__FUT10	2.9	tier2	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.A2.A0ES.01A	GTF2E2__NARS2	0.55	tier3	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.BH.A0B7.01A	GTF2F2__NBEA	0.013	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.A8.A06U.01A	GTF2H1__HPS5	0.5	tier1	5UTR-CDS	A0 : B0	A0 : B0	NA
BRCA	TCGA.A8.A0A7.01A	GTF3C2__WDR35	0.28	tier1	In-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.E2.A14S.01A	GTF3C6__LACE1	0.16	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.A8.A07J.01A	GTPBP2__HIST1H2BJ	0.9	tier1	CDS-3UTR	A0 : B0	A0 : B0	NA
BRCA	TCGA.A1.A0SP.01A	GULP1__FSIP2	0.46	tier2	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.A1.A0SP.01A	GULP1__NUP35	0.035	tier1	5UTR-CDS	A0 : B1	A0 : B0	NA
BRCA	TCGA.BH.A1F6.01A	GYS1__EML2	4.3	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.BH.A0HL.01A	H2AFJ__ARFGEF2	0.33	tier4	3UTR-CDS	A0 : B0	A0 : B0	NA
BRCA	TCGA.E2.A15E.01A	H2AFY__CNOT6	0.015	tier1	In-frame	A0 : B0	A0 : B0	non-validated
BRCA	TCGA.E2.A15E.06A	H2AFY__CNOT6	0.015	tier1	In-frame	A0 : B0	A0 : B0	non-validated
BRCA	TCGA.E2.A109.01A	HACE1__FBLN1	0.48	tier3	Out-of-frame	A0 : B1	A0 : B0	non-validated
BRCA	TCGA.AC.A62V.01A	HAP1__GAST	0.002	tier2	CDS-5UTR	A0 : B0	A0 : B0	NA
BRCA	TCGA.A2.A0EP.01A	HARS__CLINT1	0.5	tier1	Out-of-frame	A1 : B0	A1 : B0	NA
BRCA	TCGA.E9.A1RC.01A	HARS__FAM53C	1.9	tier1	CDS-5UTR	A1 : B0	A1 : B0	NA
BRCA	TCGA.EW.A2FR.01A	HAUS8__C19orf57	0.45	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.D8.A1X9.01A	HCFC1__MECP2	0.27	tier1	CDS-5UTR	A0 : B0	A0 : B0	NA
BRCA	TCGA.BH.A0B9.01A	HDAC1__KPNA6	0.56	tier1	In-frame	A1 : B1	A0 : B0	validated
BRCA	TCGA.BH.A203.01A	HDAC2__TRDN	0.039	tier1	In-frame	A1 : B0	A1 : B0	NA
BRCA	TCGA.E2.A14T.01A	HDAC7__IRAK4	0.6	tier1	CDS-5UTR	A0 : B0	A0 : B0	NA
BRCA	TCGA.AN.A0FZ.01A	HDAC9__PPL	1.0	tier3	Out-of-frame	A1 : B1	A0 : B0	NA
BRCA	TCGA.AR.A5QQ.01A	HDDC2__STBD1	2.4	tier1	CDS-5UTR	A0 : B0	A0 : B0	NA
BRCA	TCGA.BH.A0AW.01A	HDHD2__SNF8	0.63	tier1	5UTR-CDS	A0 : B0	A0 : B0	NA
BRCA	TCGA.B6.A0RM.01A	HEATR3__CHRNB3	0.082	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.A1.A0SB.01A	HEATR5B__MYB	0.021	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.AC.A62V.01A	HEATR6__C17orf64	0.13	tier4	Out-of-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.A8.A09Q.01A	HEATR6__FGF10	0.025	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.A8.A09Q.01A	HEATR6__GALNT13	2.7	tier1	In-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.E9.A1N8.01A	HEATR6__WEE1	0.45	tier1	Out-of-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.BH.A0C0.01A	HEATR7A__ARMC2	0.17	tier1	In-frame	A0 : B1	A0 : B0	NA
BRCA	TCGA.BH.A18T.01A	HEATR7A__GPAA1	0.032	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.AR.A0TV.01A	HECTD1__PRPF39	0.002	tier1	CDS-5UTR	A0 : B0	A0 : B0	NA
BRCA	TCGA.A2.A1FW.01A	HECTD2__GLRX3	0.019	tier2	CDS-3UTR	A0 : B0	A0 : B0	NA
BRCA	TCGA.A8.A09A.01A	HECTD2__PCGF5	0.35	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.C8.A1HG.01A	HECTD2__PCGF5	0.35	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.A8.A07C.01A	HEG1__SLC12A8	0.008	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.A8.A09Q.01A	HELLS__TBC1D12	0.27	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.E2.A1B5.01A	HELZ__PITPNC1	3.6	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.3C.AALI.01A	HELZ__TAF15	3.7	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.OL.A5RZ.01A	HELZ__TTYH2	0.52	tier1	Out-of-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.LL.A5YN.01A	HERC1__CSNK1G1	0.1	tier1	CDS-5UTR	A0 : B0	A0 : B0	NA
BRCA	TCGA.D8.A1JK.01A	HERC1__DAPK2	0.12	tier1	5UTR-CDS	A0 : B0	A0 : B0	NA
BRCA	TCGA.AQ.A54N.01A	HERC1__KIAA0101	2.8	tier1	Out-of-frame	A1 : B0	A1 : B0	NA
BRCA	TCGA.LL.A5YN.01A	HERC1__KIAA0101	2.8	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.A2.A1G1.01A	HERC1__USP3	0.031	tier3	In-frame	A0 : B1	A0 : B0	NA
BRCA	TCGA.AR.A0U4.01A	HERC4__RUFY2	0.2	tier1	In-frame	A1 : B1	A0 : B0	NA
BRCA	TCGA.E2.A15E.01A	HEYL__COL9A2	0.37	tier1	Out-of-frame	A0 : B0	A0 : B0	validated
BRCA	TCGA.E2.A15E.06A	HEYL__COL9A2	0.37	tier1	Out-of-frame	A0 : B0	A0 : B0	validated
BRCA	TCGA.C8.A1HK.01A	HGSNAT__MBOAT1	0.17	tier2	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.AN.A0FT.01A	HHAT__CD34	0.37	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.S3.A6ZG.01A	HHAT__RFWD2	1.4	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.AC.A2BM.01A	HHAT__SERTAD4	0.67	tier1	CDS-5UTR	A0 : B0	A0 : B0	NA
BRCA	TCGA.E2.A1LK.01A	HHIPL2__TLR5	0.37	tier3	CDS-5UTR	A0 : B0	A0 : B0	validated
BRCA	TCGA.A8.A09M.01A	HIBCH__CTNNA2	0.031	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.D8.A1JL.01A	HIF1A__MNAT1	0.11	tier1	In-frame	A1 : B1	A1 : B0	NA
BRCA	TCGA.BH.A0DD.01A	HIPK3__TOLLIP	0.97	tier1	5UTR-CDS	A0 : B0	A0 : B1	NA
BRCA	TCGA.BH.A0AU.01A	HIRA__CABIN1	0.089	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.A8.A09N.01A	HIST1H2AC__SLC17A4	0.059	tier1	3UTR-CDS	A0 : B0	A0 : B0	NA
BRCA	TCGA.LL.A740.01A	HIVEP1__DST	0.053	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.A2.A0CX.01A	HIVEP1__OFCC1	0.48	tier1	NA	A0 : B0	A0 : B0	NA
BRCA	TCGA.BH.A1F0.01A	HIVEP3__ASCC3	1.0	tier1	5UTR-CDS	A0 : B0	A0 : B0	NA
BRCA	TCGA.BH.A18J.01A	HIVEP3__CREB3L4	0.22	tier1	5UTR-CDS	A0 : B0	A0 : B0	NA
BRCA	TCGA.BH.A1FE.06A	HLA-B__SNW1	0.41	tier4	3UTR-CDS	A0 : B0	A0 : B0	NA
BRCA	TCGA.S3.AA0Z.01A	HLA-B__UBR5	6.9	tier3	3UTR-CDS	A0 : B1	A0 : B1	NA
BRCA	TCGA.BH.A0B6.01A	HLA-C__CFB	0.064	tier1	NA	A0 : B0	A0 : B0	NA
BRCA	TCGA.E2.A158.01A	HLCS__CD53	0.34	tier2	CDS-5UTR	A0 : B0	A0 : B0	NA
BRCA	TCGA.AR.A256.01A	HMCN1__RNF2	0.055	tier2	Out-of-frame	A0 : B1	A0 : B0	validated
BRCA	TCGA.HN.A2NL.01A	HN1__GGA3	0.81	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.AC.A3EH.01A	HNRNPF__ATAD1	0.037	tier1	5UTR-5UTR	A0 : B0	A0 : B0	NA
BRCA	TCGA.E2.A1LE.01A	HNRNPH1__RNF130	1.2	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.A8.A09Q.01A	HNRNPM__CERS4	0.047	tier1	CDS-5UTR	A1 : B0	A1 : B0	NA
BRCA	TCGA.BH.A1F0.01A	HNRNPUL2__TTC9C	0.094	tier4	In-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.S3.AA0Z.01A	HOOK2__NFIX	0.044	tier1	In-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.A2.A0D1.01A	HOOK3__IKBKB	0.008	tier1	In-frame	A1 : B1	A0 : B1	non-validated
BRCA	TCGA.BH.A0HX.01A	HOOK3__MTFR1	0.28	tier1	NA	A0 : B0	A0 : B0	NA
BRCA	TCGA.E2.A15M.01A	HOOK3__PLEKHA2	0.61	tier1	Out-of-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.AR.A1AT.01A	HOOK3__TADA2A	0.24	tier1	NA	A0 : B0	A0 : B0	NA
BRCA	TCGA.A2.A0EW.01A	HOOK3__TM2D2	1.3	tier1	CDS-5UTR	A1 : B0	A0 : B0	NA
BRCA	TCGA.A1.A0SO.01A	HPCAL1__CPSF3	2.6	tier4	5UTR-CDS	A0 : B0	A0 : B0	NA
BRCA	TCGA.B6.A0RT.01A	HPN__PPP2R5C	1.3	tier1	Out-of-frame	A0 : B1	A0 : B0	non-validated
BRCA	TCGA.AR.A24W.01A	HPRT1__CTPS2	2.6	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.BH.A1F0.01A	HPS3__PHF17	0.96	tier4	CDS-5UTR	A1 : B0	A0 : B0	NA
BRCA	TCGA.A8.A06U.01A	HPS5__SETD5	0.33	tier1	CDS-5UTR	A0 : B0	A0 : B0	NA
BRCA	TCGA.AN.A0FZ.01A	HS2ST1__GBP6	0.72	tier1	CDS-5UTR	A0 : B0	A0 : B0	NA
BRCA	TCGA.A2.A0YE.01A	HS2ST1__PRDX1	1.0	tier1	CDS-5UTR	A0 : B0	A0 : B0	NA
BRCA	TCGA.S3.AA10.01A	HS6ST2__ODZ1	0.048	tier3	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.B6.A0X1.01A	HSD17B3__ENPP2	1.6	tier2	Out-of-frame	A0 : B1	A0 : B0	NA
BRCA	TCGA.A2.A0EW.01A	HSDL2__FRMD3	0.63	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.BH.A0B3.01A	HSF1__ADAMTS12	2.3	tier1	Out-of-frame	A1 : B0	A0 : B0	validated
BRCA	TCGA.BH.A0WA.01A	HSP90AB1__SLC29A1	0.82	tier1	5UTR-5UTR	A0 : B0	A0 : B0	non-validated
BRCA	TCGA.AR.A0TV.01A	HSP90AB1__TAF3	0.13	tier4	NA	A0 : B0	A0 : B0	NA
BRCA	TCGA.BH.A0B6.01A	HSP90B1__CFB	0.39	tier3	NA	A0 : B0	A0 : B0	NA
BRCA	TCGA.A7.A2KD.01A	HSPA14__MRPS35	1.6	tier1	Out-of-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.D8.A1JL.01A	HSPA9__ARL15	1.0	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.AC.A5XU.01A	HSPB1__AC011333.1	0.95	tier3	NA	A0 : B0	A0 : B0	NA
BRCA	TCGA.AC.A3OD.01B	HSPH1__KIAA0825	0.19	tier1	Out-of-frame	A0 : B1	A0 : B0	NA
BRCA	TCGA.A2.A04W.01A	HTATSF1__BRS3	0.3	tier4	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.A8.A06X.01A	HTATSF1__BRS3	0.3	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.C8.A12L.01A	HTRA1__TYK2	0.33	tier2	3UTR-5UTR	A0 : B0	A0 : B0	non-validated
BRCA	TCGA.E9.A1R6.01A	HTT__ESYT2	0.24	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.BH.A18T.01A	HUWE1__PHF8	0.075	tier1	Out-of-frame	A1 : B0	A1 : B0	NA
BRCA	TCGA.OL.A5RZ.01A	HYI__NFIA	0.73	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.BH.A0DX.01A	ICMT__GPR153	0.2	tier1	CDS-5UTR	A0 : B0	A0 : B0	NA
BRCA	TCGA.A7.A13D.01A	ICOSLG__KCNJ6	2.2	tier2	In-frame	A0 : B0	A0 : B0	validated
BRCA	TCGA.B6.A0I1.01A	IFFO2__UBR4	1.0	tier3	In-frame	A0 : B0	A0 : B0	non-validated
BRCA	TCGA.A7.A2KD.01A	IFI44L__SLC44A3	0.21	tier1	5UTR-CDS	A0 : B0	A0 : B0	NA
BRCA	TCGA.A8.A06O.01A	IFITM10__DENND5A	0.016	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.B6.A0RT.01A	IFT74__LDLRAD3	0.024	tier3	Out-of-frame	A1 : B0	A0 : B0	non-validated
BRCA	TCGA.AR.A250.01A	IFT88__WASF3	0.016	tier3	CDS-5UTR	A1 : B0	A0 : B0	NA
BRCA	TCGA.GM.A2DK.01A	IGF1R__ADPGK	1.1	tier1	Out-of-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.E9.A1NF.01A	IGF1R__ARID1B	0.082	tier1	In-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.C8.A1HI.01A	IGF1R__C15orf41	0.025	tier1	CDS-5UTR	A1 : B0	A0 : B0	NA
BRCA	TCGA.A8.A09E.01A	IGF1R__PRPS1	0.87	tier1	In-frame	A0 : B1	A0 : B0	NA
BRCA	TCGA.BH.A1FG.01A	IGF1R__RAB27A	1.5	tier3	CDS-5UTR	A1 : B0	A0 : B0	NA
BRCA	TCGA.C8.A1HI.01A	IGF1R__TRIP4	0.25	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.A1.A0SF.01A	IGF1R__WDR93	0.083	tier2	CDS-5UTR	A1 : B0	A0 : B0	NA
BRCA	TCGA.EW.A1PB.01A	IGF2BP2__NCEH1	0.62	tier2	Out-of-frame	A1 : B0	A1 : B0	non-validated
BRCA	TCGA.AO.A124.01A	IGF2BP3__ACSM1	1.1	tier2	In-frame	A0 : B0	A0 : B0	non-validated
BRCA	TCGA.BH.A0BL.01A	IGF2R__ACVR2A	1.9	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.E9.A248.01A	IGF2R__PREP	0.94	tier1	Out-of-frame	A1 : B1	A0 : B0	NA
BRCA	TCGA.A8.A079.01A	IGFBP5__CXCR5	0.28	tier3	3UTR-5UTR	A0 : B0	A0 : B0	NA
BRCA	TCGA.AQ.A04L.01B	IGHMBP2__C7orf72	3.5	tier3	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.BH.A0W3.01A	IGSF3__KDM2A	0.003	tier2	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.BH.A0GY.01A	IGSF3__MAN1A2	0.64	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.C8.A12L.01A	IGSF3__TBX15	0.93	tier1	Out-of-frame	A0 : B0	A0 : B0	non-validated
BRCA	TCGA.E2.A159.01A	IKBIP__ANKS1B	0.44	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.EW.A1PD.01A	IKBKAP__TBC1D2	0.67	tier2	5UTR-CDS	A0 : B1	A0 : B0	NA
BRCA	TCGA.EW.A6SB.01A	IKBKB__ANK1	0.076	tier1	In-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.AR.A2LK.01A	IKBKB__FADD	2.5	tier1	Out-of-frame	A1 : B0	A0 : B0	non-validated
BRCA	TCGA.XX.A899.01A	IKBKB__RP11-930P14.1	0.41	tier4	Out-of-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.D8.A27H.01A	IKZF1__LRBA	2.3	tier1	In-frame	A1 : B0	A1 : B0	validated
BRCA	TCGA.AR.A250.01A	IKZF3__BCAS3	0.36	tier1	Out-of-frame	A0 : B1	A0 : B0	NA
BRCA	TCGA.3C.AALI.01A	IKZF3__PNMT	0.4	tier4	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.AN.A0AM.01A	IL12RB2__DAB1	2.9	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.AN.A0FJ.01A	IL12RB2__PDE4B	0.65	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.BH.A203.01A	IL1R1__IL1R2	1.0	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.GM.A2DK.01A	IL1RAPL1__MAGEB10	3.1	tier2	CDS-5UTR	A0 : B0	A0 : B0	NA
BRCA	TCGA.BH.A1FD.01A	IL1RL2__IL1R2	0.51	tier2	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.AQ.A1H3.01A	IL27RA__RLN3	0.019	tier2	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.OL.A66I.01A	IL28RA__C1orf201	0.45	tier3	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.A2.A3XW.01A	IL4I1__KCNQ2	0.022	tier1	5UTR-CDS	A0 : B1	A0 : B0	NA
BRCA	TCGA.A2.A0YJ.01A	ILF3__C3	0.32	tier1	5UTR-CDS	A0 : B0	A0 : B0	NA
BRCA	TCGA.XX.A89A.01A	ILF3__DENND2D	0.13	tier1	Out-of-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.A7.A26G.01A	ILKAP__PER2	0.34	tier1	In-frame	A0 : B0	A0 : B0	validated
BRCA	TCGA.B6.A0IQ.01A	ILVBL__SYDE1	0.076	tier1	In-frame	A0 : B1	A0 : B0	non-validated
BRCA	TCGA.AN.A0AS.01A	IMPAD1__ZCCHC24	4.4	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.A8.A06R.01A	INADL__CACHD1	5.7	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.E2.A15P.01A	INADL__GLIS1	3.0	tier1	CDS-5UTR	A0 : B0	A0 : B0	NA
BRCA	TCGA.EW.A3U0.01A	INADL__ST6GALNAC5	0.33	tier1	5UTR-CDS	A0 : B0	A0 : B0	validated
BRCA	TCGA.C8.A1HI.01A	INO80__PRKCA	0.37	tier3	In-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.AR.A0TT.01A	INPP5A__DLG2	0.83	tier1	In-frame	A0 : B1	A0 : B0	NA
BRCA	TCGA.AO.A03P.01A	INPP5A__FAM149B1	0.013	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.AO.A03O.01A	INPP5A__KIF20B	0.69	tier2	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.A2.A04U.01A	INSIG1__DPP6	0.15	tier2	In-frame	A0 : B1	A0 : B0	NA
BRCA	TCGA.A1.A0SN.01A	INTS2__AXIN2	0.26	tier2	CDS-5UTR	A1 : B0	A0 : B0	NA
BRCA	TCGA.D8.A27G.01A	INTS2__LIMD2	0.68	tier2	CDS-5UTR	A0 : B0	A0 : B0	NA
BRCA	TCGA.A8.A079.01A	INTS4__C11orf30	0.77	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.AC.A2BM.01A	INTS4__GAB2	0.056	tier1	In-frame	A1 : B1	A0 : B0	NA
BRCA	TCGA.D8.A140.01A	INTS4__KCTD14	0.66	tier2	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.A8.A0A6.01A	INTS4__POLD3	0.43	tier1	NA	A0 : B0	A0 : B0	NA
BRCA	TCGA.A8.A086.01A	INTS4__PPFIA1	2.1	tier1	In-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.C8.A135.01A	INTS5__SYT12	0.53	tier1	CDS-5UTR	A0 : B0	A0 : B0	NA
BRCA	TCGA.A8.A09A.01A	INTS8__DPY19L4	0.29	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.C8.A12L.01A	INTS8__RP11-219B4.5	1.2	tier1	In-frame	A0 : B0	A0 : B0	validated
BRCA	TCGA.A7.A6VX.01A	INTS9__AC130352.1	0.85	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.A1.A0SK.01A	IP6K2__PRKAR2A	1.7	tier2	5UTR-CDS	A0 : B0	A0 : B0	NA
BRCA	TCGA.B6.A0I8.01A	IPO11__CENPJ	0.19	tier1	5UTR-CDS	A0 : B0	A0 : B0	NA
BRCA	TCGA.A8.A08L.01A	IPO11__TNFAIP8	1.9	tier1	In-frame	A0 : B0	A0 : B0	validated
BRCA	TCGA.A2.A04P.01A	IPO8__CDH13	0.12	tier1	Out-of-frame	A0 : B0	A0 : B0	non-validated
BRCA	TCGA.AO.A03L.01A	IQCB1__CACNG4	3.8	tier1	5UTR-CDS	A0 : B0	A0 : B0	non-validated
BRCA	TCGA.AR.A24O.01A	IQCB1__ILDR1	3.0	tier4	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.BH.A0C0.01A	IQGAP1__MESP2	0.034	tier1	In-frame	A1 : B0	A1 : B0	NA
BRCA	TCGA.BH.A0AV.01A	IQGAP1__TTLL13	0.71	tier3	In-frame	A1 : B0	A1 : B0	non-validated
BRCA	TCGA.AR.A24Z.01A	IQGAP2__ACOT12	0.43	tier2	Out-of-frame	A1 : B0	A0 : B0	validated
BRCA	TCGA.AR.A0U4.01A	IQGAP3__ETV3	0.008	tier1	Out-of-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.BH.A18R.01A	IQGAP3__SH2D2A	1.2	tier2	In-frame	A1 : B0	A0 : B0	non-validated
BRCA	TCGA.A1.A0SN.01A	IQUB__ASB15	0.031	tier1	5UTR-5UTR	A0 : B0	A0 : B0	NA
BRCA	TCGA.AC.A2BM.01A	ITCH__RALY	5.0	tier1	CDS-5UTR	A0 : B0	A0 : B0	NA
BRCA	TCGA.BH.A0H7.01A	ITCH__TAB1	2.6	tier2	5UTR-CDS	A0 : B0	A0 : B0	NA
BRCA	TCGA.E2.A9RU.01A	ITGB1__DYM	0.38	tier3	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.A8.A08O.01A	ITGB4__NARF	1.3	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.C8.A26X.01A	ITGB4__SLC16A5	0.43	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.AO.A03L.01A	ITGB5__PARP14	1.2	tier1	Out-of-frame	A0 : B0	A0 : B0	validated
BRCA	TCGA.D8.A1XK.01A	ITGB6__RBMS1	0.71	tier1	In-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.PL.A8LX.01A	ITPA__SLC22A24	2.0	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.BH.A0HY.01A	ITPK1__ACO1	1.5	tier1	CDS-5UTR	A0 : B0	A0 : B0	NA
BRCA	TCGA.AO.A0J2.01A	ITPKB__ZC3HAV1	0.45	tier1	In-frame	A0 : B0	A0 : B0	validated
BRCA	TCGA.BH.A18V.01A	ITPKC__LTBP4	0.051	tier1	In-frame	A0 : B1	A0 : B0	NA
BRCA	TCGA.BH.A18V.06A	ITPKC__LTBP4	0.051	tier1	In-frame	A0 : B1	A0 : B0	NA
BRCA	TCGA.BH.A18V.06A	ITPKC__SPTBN4	0.3	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.A7.A4SD.01A	ITPR2__ANO2	1.4	tier2	In-frame	A0 : B1	A0 : B0	NA
BRCA	TCGA.EW.A1P4.01A	ITPR3__AL353597.1	0.38	tier3	In-frame	A1 : B0	A1 : B0	NA
BRCA	TCGA.A1.A0SO.01A	ITSN1__KIAA1211	0.23	tier4	5UTR-5UTR	A0 : B0	A0 : B0	NA
BRCA	TCGA.E2.A1LE.01A	ITSN2__NMT1	0.026	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.E2.A9RU.01A	JARID2__BMP6	0.047	tier1	Out-of-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.C8.A26X.01A	JDP2__VRTN	0.49	tier1	CDS-5UTR	A0 : B0	A0 : B0	NA
BRCA	TCGA.B6.A0IN.01A	JHDM1D__SND1	1.1	tier2	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.A2.A4RW.01A	KAL1__ARHGEF26	1.2	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.AN.A0XL.01A	KANK1__DOCK8	1.8	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.E2.A15A.01A	KAT6A__ADAM2	0.88	tier1	Out-of-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.E2.A15A.06A	KAT6A__ADAM2	0.88	tier1	Out-of-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.A8.A06T.01A	KAT6A__IKBKB	3.6	tier1	In-frame	A1 : B1	A0 : B0	NA
BRCA	TCGA.AO.A03P.01A	KAT6A__IKBKB	3.6	tier1	Out-of-frame	A1 : B1	A0 : B1	NA
BRCA	TCGA.AC.A5XU.01A	KAT6A__KLK4	1.5	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.BH.A202.01A	KAT6A__MSR1	0.34	tier1	CDS-5UTR	A1 : B0	A0 : B0	NA
BRCA	TCGA.C8.A12Q.01A	KAT6B__ADK	0.61	tier1	Out-of-frame	A1 : B0	A0 : B0	non-validated
BRCA	TCGA.E2.A574.01A	KAT6B__ADK	0.61	tier1	In-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.AQ.A04L.01B	KAT6B__C10orf96	0.5	tier1	In-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.E9.A228.01A	KAT6B__DDX4	0.07	tier1	CDS-5UTR	A0 : B0	A0 : B0	NA
BRCA	TCGA.A2.A25B.01A	KAT6B__RTKN2	0.046	tier4	In-frame	A0 : B0	A0 : B0	non-validated
BRCA	TCGA.A8.A076.01A	KAT7__AXIN2	0.17	tier1	CDS-5UTR	A1 : B0	A0 : B0	NA
BRCA	TCGA.JL.A3YW.01A	KATNA1__LATS1	1.8	tier3	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.A8.A08I.01A	KATNA1__PPP2R1A	2.7	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.E9.A248.01A	KATNAL1__WASF3	1.3	tier4	5UTR-CDS	A0 : B1	A0 : B0	NA
BRCA	TCGA.BH.A1FC.01A	KAZN__ST3GAL3	0.15	tier1	Out-of-frame	A0 : B0	A0 : B0	non-validated
BRCA	TCGA.EW.A1P4.01A	KCMF1__PRKDC	0.04	tier1	In-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.EW.A6S9.01A	KCNC3__ASPDH	0.057	tier2	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.AN.A0FJ.01A	KCNC4__GSTM4	1.8	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.A8.A06U.01A	KCNE2__HTN3	100.0	tier2	5UTR-CDS	A0 : B0	A0 : B0	NA
BRCA	TCGA.EW.A6SA.01A	KCNH1__LPGAT1	0.86	tier1	CDS-5UTR	A0 : B0	A0 : B0	NA
BRCA	TCGA.BH.A1FM.01A	KCNJ3__GALNT13	0.28	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.C8.A135.01A	KCNMA1__DLG5	0.52	tier3	Out-of-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.EW.A1OV.01A	KCNMA1__ECD	0.22	tier1	CDS-5UTR	A1 : B0	A0 : B0	NA
BRCA	TCGA.A2.A25D.01A	KCNMA1__MSMB	1.6	tier1	In-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.E2.A106.01A	KCNMA1__RFX2	0.002	tier1	CDS-5UTR	A1 : B0	A0 : B0	NA
BRCA	TCGA.A2.A0CW.01A	KCNN3__DCST2	0.88	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.D8.A1JG.01B	KCNQ1__TSPAN32	0.012	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.D8.A27H.01A	KCTD20__JARID2	0.33	tier1	Out-of-frame	A0 : B1	A0 : B0	validated
BRCA	TCGA.A2.A0D2.01A	KDM2A__FBXO3	0.14	tier2	Out-of-frame	A1 : B0	A0 : B0	non-validated
BRCA	TCGA.AO.A0J6.01A	KDM2A__GRIP1	0.35	tier3	Out-of-frame	A1 : B0	A0 : B0	non-validated
BRCA	TCGA.A1.A0SN.01A	KDM2A__MAP3K3	1.1	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.AO.A0J3.01A	KDM2A__PPP6R3	0.34	tier1	Out-of-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.B6.A0IG.01A	KDM2A__RHOD	0.26	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.EW.A1PB.01A	KDM2A__RHOD	0.26	tier1	In-frame	A1 : B0	A0 : B0	non-validated
BRCA	TCGA.BH.A18R.01A	KDM2A__SYT12	0.3	tier1	CDS-5UTR	A1 : B0	A0 : B0	non-validated
BRCA	TCGA.BH.A0B3.01A	KDM3A__RFX8	1.2	tier1	CDS-5UTR	A0 : B0	A0 : B0	non-validated
BRCA	TCGA.BH.A18J.01A	KDM4A__CREB3L4	0.97	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.D8.A1XZ.01A	KDM4A__HYI	0.35	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.A2.A04P.01A	KDM4A__PTPRF	1.2	tier3	5UTR-CDS	A0 : B0	A0 : B0	validated
BRCA	TCGA.A7.A13E.01A	KDM4B__C19orf44	0.19	tier1	5UTR-5UTR	A0 : B0	A0 : B0	NA
BRCA	TCGA.BH.A0B9.01A	KDM4B__UHRF1	0.23	tier1	5UTR-CDS	A0 : B0	A0 : B0	non-validated
BRCA	TCGA.BH.A0H7.01A	KDM4B__UHRF1	0.23	tier1	In-frame	A0 : B1	A0 : B1	NA
BRCA	TCGA.EW.A6S9.01A	KDM4C__ARMC2	1.9	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.E9.A1NA.01A	KDM4C__JAK2	0.25	tier2	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.A1.A0SK.01A	KDM5A__ANO2	1.4	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.AO.A124.01A	KDM5A__NINJ2	0.011	tier1	In-frame	A0 : B0	A0 : B0	validated
BRCA	TCGA.A2.A1FW.01A	KDM5B__RABGAP1L	0.012	tier1	Out-of-frame	A1 : B0	A1 : B0	NA
BRCA	TCGA.BH.A0BF.01A	KDM6A__PDHX	0.15	tier1	Out-of-frame	A0 : B1	A0 : B0	NA
BRCA	TCGA.A7.A13D.01A	KDM6B__TMEM95	0.007	tier1	Out-of-frame	A0 : B0	A0 : B0	non-validated
BRCA	TCGA.A1.A0SO.01A	KHDC1__NLK	0.71	tier4	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.OL.A66P.01A	KHDC1__OOEP	100.0	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.GI.A2C9.01A	KHDRBS3__ADI1	3.3	tier1	In-frame	A0 : B0	A0 : B0	non-validated
BRCA	TCGA.AO.A03N.01B	KHSRP__CD70	0.1	tier1	In-frame	A0 : B0	A0 : B0	non-validated
BRCA	TCGA.A7.A2KD.01A	KIAA0100__TEX14	1.3	tier1	Out-of-frame	A1 : B1	A0 : B0	NA
BRCA	TCGA.BH.A1FU.01A	KIAA0101__TRIP4	1.3	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.A2.A0CY.01A	KIAA0146__SYNC	5.9	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.A2.A25A.01A	KIAA0182__HSD17B2	0.38	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.A2.A25B.01A	KIAA0182__KIAA0513	0.16	tier4	CDS-5UTR	A0 : B0	A0 : B0	non-validated
BRCA	TCGA.A7.A2KD.01A	KIAA0182__METTL23	1.0	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.AO.A03M.01B	KIAA0195__ICT1	0.59	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.JL.A3YW.01A	KIAA0195__ICT1	0.59	tier1	5UTR-CDS	A0 : B0	A0 : B0	NA
BRCA	TCGA.LL.A441.01A	KIAA0232__INPP4B	0.71	tier1	Out-of-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.C8.A1HK.01A	KIAA0240__CYB5R4	0.15	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.D8.A140.01A	KIAA0240__HIST1H2AC	0.031	tier1	CDS-3UTR	A0 : B0	A0 : B0	NA
BRCA	TCGA.AR.A251.01A	KIAA0240__UBR2	0.15	tier2	5UTR-CDS	A0 : B1	A0 : B0	NA
BRCA	TCGA.A8.A06O.01A	KIAA0247__RAD51B	1.7	tier1	5UTR-CDS	A0 : B0	A0 : B0	NA
BRCA	TCGA.D8.A1XJ.01A	KIAA0319L__PHC2	2.3	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.D8.A1JI.01A	KIAA0368__PACS1	1.2	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.A8.A06Y.01A	KIAA0368__WNK2	0.048	tier2	5UTR-CDS	A0 : B1	A0 : B0	NA
BRCA	TCGA.E2.A1LL.01A	KIAA0528__ITPR2	0.48	tier1	In-frame	A0 : B0	A0 : B0	non-validated
BRCA	TCGA.AR.A1AR.01A	KIAA0528__PLCZ1	0.028	tier2	CDS-5UTR	A0 : B0	A0 : B0	NA
BRCA	TCGA.E9.A1N8.01A	KIAA0556__NECAB2	0.11	tier3	In-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.BH.A0HY.01A	KIAA0564__PTPRG	0.19	tier2	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.BH.A18G.01A	KIAA0564__RB1	0.35	tier3	In-frame	A0 : B1	A0 : B0	NA
BRCA	TCGA.E9.A1N4.01A	KIAA0664__DLG5	0.11	tier3	In-frame	A0 : B1	A0 : B0	NA
BRCA	TCGA.AC.A3OD.01A	KIAA0825__HSPH1	0.19	tier2	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.C8.A12K.01A	KIAA0922__MND1	0.6	tier4	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.EW.A1OZ.01A	KIAA0930__ANK3	0.94	tier1	In-frame	A1 : B1	A0 : B0	NA
BRCA	TCGA.D8.A1JP.01A	KIAA1033__AUTS2	1.3	tier1	Out-of-frame	A1 : B1	A1 : B0	NA
BRCA	TCGA.AC.A2QH.01A	KIAA1109__CHODL	0.41	tier2	NA	A0 : B0	A0 : B0	NA
BRCA	TCGA.C8.A12L.01A	KIAA1109__GPR125	0.061	tier1	Out-of-frame	A0 : B0	A0 : B0	validated
BRCA	TCGA.A1.A0SO.01A	KIAA1211__ITSN1	0.019	tier3	5UTR-5UTR	A0 : B0	A0 : B0	NA
BRCA	TCGA.E2.A14Q.01A	KIAA1211__STMN1	0.98	tier1	5UTR-5UTR	A0 : B0	A0 : B0	NA
BRCA	TCGA.EW.A1P1.01A	KIAA1217__PFKFB3	1.2	tier3	Out-of-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.AN.A0AM.01A	KIAA1244__AC093158.1	0.041	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.AC.A2FB.01A	KIAA1267__LAYN	0.034	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.AC.A23H.01A	KIAA1267__ORMDL3	0.42	tier1	CDS-5UTR	A0 : B0	A0 : B0	NA
BRCA	TCGA.BH.A0B9.01A	KIAA1429__CAMK2A	0.36	tier3	Out-of-frame	A1 : B0	A0 : B0	non-validated
BRCA	TCGA.E2.A15E.01A	KIAA1430__CCDC110	0.012	tier2	Out-of-frame	A0 : B0	A0 : B0	validated
BRCA	TCGA.E2.A15E.06A	KIAA1430__CCDC110	0.012	tier1	In-frame	A0 : B0	A0 : B0	validated
BRCA	TCGA.LL.A73Z.01A	KIAA1598__FAM24B	1.3	tier1	CDS-5UTR	A0 : B0	A0 : B0	NA
BRCA	TCGA.A2.A0D0.01A	KIAA1755__HS6ST2	1.0	tier1	Out-of-frame	A0 : B0	A0 : B0	non-validated
BRCA	TCGA.A2.A0CX.01A	KIF13A__TPMT	0.78	tier3	In-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.B6.A0WV.01A	KIF13B__EPN2	1.5	tier1	CDS-5UTR	A1 : B0	A0 : B0	NA
BRCA	TCGA.A2.A0ES.01A	KIF13B__ODZ4	0.36	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.AO.A0J5.01A	KIF13B__TMEM66	0.67	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.A8.A07W.01A	KIF16B__HIPK3	0.4	tier3	Out-of-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.E2.A159.01A	KIF1B__MYO5B	1.0	tier1	Out-of-frame	A1 : B1	A1 : B0	NA
BRCA	TCGA.BH.A0B7.01A	KIF5B__HPS4	0.022	tier1	Out-of-frame	A1 : B0	A1 : B0	NA
BRCA	TCGA.OL.A5D8.01A	KIFAP3__DUSP27	2.1	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.BH.A1EV.01A	KIRREL__RBP7	2.5	tier1	Out-of-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.BH.A0WA.01A	KLF3__SCFD2	7.1	tier1	Out-of-frame	A0 : B0	A0 : B0	non-validated
BRCA	TCGA.C8.A1HN.01A	KLHDC4__SPG7	2.6	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.A2.A3KC.01A	KLHL18__TEX264	0.11	tier1	CDS-5UTR	A0 : B0	A0 : B0	validated
BRCA	TCGA.A2.A0YE.01A	KLHL26__C19orf50	0.61	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.BH.A0HL.01A	KLHL32__ROBO1	1.0	tier3	Out-of-frame	A0 : B1	A0 : B0	NA
BRCA	TCGA.BH.A0B2.01A	KLRAQ1__WARS2	0.31	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.BH.A0EE.01A	KPNA3__RP11-47I22.3	2.5	tier1	In-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.BH.A0EE.01A	KPNA3__RP11-47I22.4	1.5	tier1	NA	A0 : B0	A0 : B0	NA
BRCA	TCGA.D8.A27G.01A	KPNB1__SKAP1	0.067	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.E2.A1AZ.01A	KRAS__RERGL	0.82	tier1	Out-of-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.JL.A3YX.01A	KRT19__COL5A1	0.42	tier3	3UTR-5UTR	A0 : B0	A0 : B0	NA
BRCA	TCGA.E2.A14V.01A	KSR1__MSI2	1.7	tier1	In-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.OL.A5RZ.01A	KSR1__PIPOX	0.16	tier2	In-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.A2.A0D0.01A	KSR2__P2RX4	1.2	tier2	In-frame	A0 : B0	A0 : B0	validated
BRCA	TCGA.A2.A0EY.01A	L2HGDH__LMBRD1	0.27	tier1	Out-of-frame	A0 : B0	A0 : B0	non-validated
BRCA	TCGA.AN.A0AJ.01A	LACE1__ZUFSP	0.11	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.BH.A0H7.01A	LAMA3__PSMA8	2.4	tier4	In-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.A1.A0SJ.01A	LAMA5__C12orf28	0.36	tier1	CDS-5UTR	A1 : B0	A0 : B0	NA
BRCA	TCGA.AC.A8OQ.01A	LAMA5__C20orf151	0.008	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.D8.A27F.01A	LAMA5__UBN1	0.21	tier1	In-frame	A1 : B0	A0 : B0	non-validated
BRCA	TCGA.A2.A25F.01A	LANCL2__TFDP2	1.5	tier4	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.AC.A6IW.01A	LAPTM4A__SDC1	0.72	tier1	In-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.A2.A0YT.01A	LARGE__SNW1	4.1	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.BH.A5IZ.01A	LARP4__RYR3	3.6	tier1	Out-of-frame	A0 : B0	A1 : B0	NA
BRCA	TCGA.E9.A1R7.01A	LARP4B__PFKFB3	0.9	tier3	In-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.E2.A1LL.01A	LCOR__CPNE8	0.37	tier1	5UTR-CDS	A0 : B0	A0 : B0	validated
BRCA	TCGA.BH.A1FE.01A	LDLR__TNPO2	0.98	tier1	CDS-5UTR	A0 : B0	A0 : B0	NA
BRCA	TCGA.E9.A1R7.01A	LDLRAD1__FGGY	0.69	tier2	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.E9.A22G.01A	LDLRAD3__CD44	0.62	tier1	In-frame	A0 : B1	A0 : B0	NA
BRCA	TCGA.D8.A142.01A	LDLRAD3__ELP4	0.92	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.AN.A0AM.01A	LEMD3__LYZ	0.021	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.3C.AAAU.01A	LEMD3__RASSF6	0.29	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.C8.A1HN.01A	LEMD3__XPOT	0.09	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.UL.AAZ6.01A	LENG8__SIPA1L3	0.14	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.AN.A0AS.01A	LGALS12__PLAC9	0.17	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.BH.A203.01A	LGALS8__EDARADD	0.055	tier1	5UTR-CDS	A0 : B0	A0 : B0	NA
BRCA	TCGA.E2.A15M.01A	LGALS8__TRIM67	0.61	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.BH.A0AV.01A	LGR6__GPR37L1	1.1	tier2	Out-of-frame	A1 : B0	A0 : B0	non-validated
BRCA	TCGA.A7.A26G.01A	LIFR__C9	0.023	tier1	Out-of-frame	A0 : B0	A0 : B0	non-validated
BRCA	TCGA.AR.A0TT.01A	LIG3__C19orf50	0.21	tier4	CDS-5UTR	A1 : B0	A0 : B0	NA
BRCA	TCGA.OL.A6VO.01A	LIG3__HAP1	0.75	tier3	NA	A0 : B0	A0 : B0	NA
BRCA	TCGA.E9.A1RF.01A	LIG3__ZFAT	0.051	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.AR.A0U4.01A	LIMA1__TRAPPC9	0.62	tier1	In-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.D8.A1X5.01A	LIMCH1__APBB2	0.67	tier1	CDS-5UTR	A1 : B0	A0 : B0	NA
BRCA	TCGA.A7.A13D.01A	LIMK2__OSBP2	0.16	tier1	Out-of-frame	A0 : B0	A0 : B0	validated
BRCA	TCGA.A8.A07O.01A	LIMK2__RUFY1	1.3	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.AR.A24L.01A	LIN52__C14orf45	0.31	tier4	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.A8.A08F.01A	LIN7A__TRHDE	0.35	tier4	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.LL.A7T0.01A	LMAN2L__MRPS5	100.0	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.AR.A24Q.01A	LMBR1__EPHA1	2.1	tier2	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.A2.A0D2.01A	LMBR1__PTPRN2	0.83	tier1	Out-of-frame	A0 : B0	A0 : B0	validated
BRCA	TCGA.AR.A24K.01A	LMBR1__PTPRN2	0.83	tier1	In-frame	A0 : B1	A0 : B0	NA
BRCA	TCGA.C8.A1HN.01A	LMBR1__TPRG1	0.079	tier3	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.C8.A1HK.01A	LMBRD1__EYS	0.24	tier4	In-frame	A0 : B1	A0 : B0	NA
BRCA	TCGA.A2.A3XU.01A	LMNA__PTN	0.052	tier4	3UTR-CDS	A0 : B0	A0 : B0	NA
BRCA	TCGA.AQ.A54N.01A	LMNA__SYT11	2.1	tier1	Out-of-frame	A1 : B0	A1 : B0	NA
BRCA	TCGA.A8.A08R.01A	LMNB2__GNG7	0.71	tier1	CDS-5UTR	A1 : B0	A1 : B0	NA
BRCA	TCGA.LL.A8F5.01A	LMO7__UCHL3	1.0	tier1	NA	A0 : B0	A0 : B0	NA
BRCA	TCGA.A2.A0D2.01A	LNPEP__CAST	0.17	tier1	CDS-5UTR	A0 : B0	A0 : B0	validated
BRCA	TCGA.A8.A09A.01A	LNX1__GABRB1	0.082	tier1	In-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.C8.A12L.01A	LONP1__MAP2K7	0.39	tier1	Out-of-frame	A1 : B1	A0 : B0	validated
BRCA	TCGA.AC.A2BK.01A	LONP1__ZNF780B	0.28	tier1	CDS-5UTR	A0 : B0	A0 : B0	non-validated
BRCA	TCGA.A2.A0D0.01A	LPAR3__ST6GALNAC3	0.019	tier1	Out-of-frame	A0 : B0	A0 : B0	validated
BRCA	TCGA.D8.A1XL.01A	LPCAT2__C19orf29	0.2	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.E2.A10F.01A	LPHN3__PPP3CA	0.32	tier1	In-frame	A0 : B0	A0 : B1	NA
BRCA	TCGA.A8.A06U.01A	LPP__FAM108C1	0.13	tier1	5UTR-CDS	A0 : B0	A0 : B0	NA
BRCA	TCGA.AQ.A04L.01B	LPP__SPATA16	0.39	tier2	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.E9.A1RH.01A	LPP__TP63	0.26	tier1	5UTR-CDS	A0 : B0	A0 : B0	NA
BRCA	TCGA.A8.A07L.01A	LRBA__CASP12	0.044	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.C8.A1HN.01A	LRBA__ESF1	1.2	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.BH.A18T.01A	LRBA__GRIK3	3.4	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.EW.A6SD.01A	LRBA__PPARGC1A	0.055	tier1	In-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.AO.A0JA.01A	LRCH3__MED12L	0.81	tier1	In-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.AR.A1AH.01A	LRIG3__PIP4K2C	1.5	tier1	CDS-3UTR	A0 : B0	A0 : B0	NA
BRCA	TCGA.A8.A07F.01A	LRP11__ULBP2	100.0	tier1	CDS-3UTR	A0 : B0	A0 : B0	NA
BRCA	TCGA.AR.A0TV.01A	LRP12__KCNB2	0.15	tier1	CDS-5UTR	A1 : B0	A0 : B0	NA
BRCA	TCGA.AC.A6IX.01A	LRP12__LAPTM4B	0.46	tier1	Out-of-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.AC.A6IX.06A	LRP12__LAPTM4B	0.46	tier1	Out-of-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.BH.A0B7.01A	LRP12__RIMS2	1.2	tier1	In-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.E2.A14X.01A	LRP12__TRAPPC9	0.66	tier1	Out-of-frame	A1 : B0	A0 : B0	non-validated
BRCA	TCGA.A2.A04Y.01A	LRP12__VPS13B	0.17	tier1	CDS-5UTR	A1 : B0	A0 : B0	NA
BRCA	TCGA.BH.A0GY.01A	LRP3__THAP8	0.83	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.PE.A5DC.01A	LRP5__ALKBH5	0.16	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.BH.A0W3.01A	LRP5__CASQ2	0.14	tier1	Out-of-frame	A1 : B1	A0 : B0	NA
BRCA	TCGA.A8.A09I.01A	LRP5__DLG2	0.42	tier1	In-frame	A0 : B0	A0 : B0	non-validated
BRCA	TCGA.A1.A0SQ.01A	LRP5__MOGAT2	0.17	tier2	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.BH.A18L.01A	LRP5__NOX4	0.81	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.E2.A150.01A	LRP5__ZNF507	0.12	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.A7.A0CG.01A	LRP6__GPR19	0.62	tier1	CDS-5UTR	A1 : B0	A0 : B0	NA
BRCA	TCGA.A8.A08F.01A	LRP8__RAD51C	0.21	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.AC.A6IW.01A	LRP8__TMEM217	0.24	tier1	CDS-5UTR	A0 : B0	A0 : B0	NA
BRCA	TCGA.OL.A66I.01A	LRPPRC__CYTIP	1.8	tier1	NA	A0 : B0	A0 : B0	NA
BRCA	TCGA.C8.A12W.01A	LRR1__KCNH5	0.26	tier2	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.A2.A3XW.01A	LRR1__MTHFD1	0.21	tier1	Out-of-frame	A0 : B1	A0 : B1	NA
BRCA	TCGA.AR.A24Z.01A	LRRC1__DAAM2	0.7	tier1	CDS-5UTR	A1 : B0	A0 : B0	non-validated
BRCA	TCGA.C8.A1HG.01A	LRRC1__FRY	1.2	tier1	Out-of-frame	A1 : B1	A0 : B0	NA
BRCA	TCGA.AR.A0U4.01A	LRRC16A__MRS2	2.2	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.A8.A09N.01A	LRRC20__NODAL	0.7	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.A7.A4SD.01A	LRRC29__FHOD1	0.023	tier3	5UTR-CDS	A0 : B0	A0 : B0	NA
BRCA	TCGA.AO.A1KR.01A	LRRC37B__RAD51C	0.5	tier2	5UTR-CDS	A0 : B0	A0 : B0	NA
BRCA	TCGA.A8.A0A7.01A	LRRC59__NUP107	1.3	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.E9.A1NC.01A	LRRC59__SPAG9	0.25	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.E2.A15T.01A	LRRC6__EXT1	0.15	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.B6.A0RE.01A	LRRC8A__CCBL1	1.2	tier2	CDS-5UTR	A0 : B0	A0 : B0	non-validated
BRCA	TCGA.E2.A158.01A	LRRC8A__GON4L	0.36	tier2	5UTR-CDS	A0 : B1	A0 : B0	NA
BRCA	TCGA.A8.A09G.01A	LRRC8D__C1orf168	0.01	tier1	5UTR-CDS	A0 : B0	A0 : B0	NA
BRCA	TCGA.A2.A4RW.01A	LRRK1__ADAMTS17	0.003	tier1	In-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.E2.A159.01A	LRSAM1__DENND1A	0.004	tier2	5UTR-CDS	A0 : B0	A0 : B0	NA
BRCA	TCGA.A8.A097.01A	LRTOMT__NFIC	1.1	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.A8.A08S.01A	LRTOMT__UVRAG	0.56	tier1	5UTR-CDS	A0 : B0	A0 : B0	validated
BRCA	TCGA.BH.A204.01A	LSAMP__C3orf70	0.009	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.AR.A2LR.01A	LSAMP__GAP43	1.4	tier3	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.AQ.A0Y5.01A	LSM14A__ACTN4	2.3	tier1	Out-of-frame	A1 : B1	A0 : B1	NA
BRCA	TCGA.AR.A24N.01A	LTBP1__BIRC6	0.084	tier1	In-frame	A1 : B1	A0 : B1	NA
BRCA	TCGA.AN.A0XN.01A	LTBP1__CDH23	0.72	tier3	In-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.BH.A0RX.01A	LTBP1__TTC27	2.3	tier4	In-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.AR.A0TU.01A	LTBP1__ZDHHC2	1.4	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.EW.A1PH.01A	LTBP4__MYO1B	0.93	tier1	Out-of-frame	A0 : B0	A0 : B0	non-validated
BRCA	TCGA.PE.A5DE.01A	LTF__CFB	1.4	tier3	NA	A0 : B0	A0 : B0	NA
BRCA	TCGA.A7.A26G.01A	LTF__CHD1	7.6	tier4	NA	A0 : B0	A0 : B0	non-validated
BRCA	TCGA.AO.A1KO.01A	LTF__NCALD	0.4	tier3	3UTR-5UTR	A0 : B0	A0 : B0	NA
BRCA