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Cancer Type-Centric Fusions Results

Cancer Type: Tier:

Tumor type can be selected from twelve tumor types.

Cancer	TCGA SampleId	FusionPair	E-value	Tier	Frame	phosphorylation	ubiquitination	WGS
BRCA	TCGA.BH.A0B9.01A	AARS::COG4	1.2	tier1	In-frame	A1 : B1	A1 : B0	non-validated
BRCA	TCGA.BH.A0B9.01A	AARS::ST3GAL2	0.64	tier1	Out-of-frame	A0 : B0	A0 : B0	non-validated
BRCA	TCGA.BH.A0HF.01A	AATF::GOSR2	0.021	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.AR.A0TX.01A	ABAT::C16orf62	0.2	tier1	5UTR-CDS	A0 : B0	A0 : B0	non-validated
BRCA	TCGA.EW.A3U0.01A	ABCA1::HDHD3	2.4	tier1	5UTR-5UTR	A0 : B0	A0 : B0	non-validated
BRCA	TCGA.A2.A3XZ.01A	ABCA5::BCAS3	0.34	tier1	5UTR-CDS	A0 : B0	A0 : B0	NA
BRCA	TCGA.AC.A3TN.01A	ABCB8::NOS3	0.06	tier1	Out-of-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.A7.A13D.01A	ABCB9::EIF2B1	0.004	tier1	In-frame	A0 : B0	A0 : B0	validated
BRCA	TCGA.GM.A2DD.01A	ABCC10::PPP2R5D	0.55	tier3	In-frame	A0 : B1	A0 : B0	NA
BRCA	TCGA.B6.A0IK.01A	ABCC3::AC217773.1	100.0	tier2	NA	A0 : B0	A0 : B0	NA
BRCA	TCGA.BH.A1F0.01A	ABHD14B::POC1A	0.55	tier4	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.AC.A8OQ.01A	ABHD2::ACAN	2.8	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.D8.A1J9.01A	ABL1::ADAMTSL2	0.26	tier1	In-frame	A1 : B1	A0 : B0	NA
BRCA	TCGA.AO.A12G.01A	ABLIM1::PTCD2	0.53	tier2	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.AN.A0FJ.01A	ABR::KIAA0664	1.0	tier2	CDS-5UTR	A0 : B0	A0 : B0	NA
BRCA	TCGA.BH.A0AV.01A	ABR::PITPNA	2.5	tier1	Out-of-frame	A0 : B0	A0 : B0	non-validated
BRCA	TCGA.AR.A256.01A	ABTB2::APIP	0.83	tier2	Out-of-frame	A0 : B1	A0 : B0	non-validated
BRCA	TCGA.AN.A0XU.01A	ABTB2::ATXN3	0.35	tier2	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.E9.A295.01A	AC006465.3::MRAP	0.26	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.AR.A0TT.01A	AC008537.4::ITPKC	2.2	tier4	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.C8.A12Z.01A	AC010859.1::OC90	1.5	tier1	5UTR-5UTR	A0 : B0	A0 : B0	NA
BRCA	TCGA.EW.A6S9.01A	AC011450.1::GLIS3	0.43	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.D8.A140.01A	AC013461.1::RAPGEF4	1.1	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.EW.A1J1.01A	AC040934.1::ARHGAP23	0.08	tier2	3UTR-CDS	A0 : B1	A0 : B0	NA
BRCA	TCGA.A7.A13D.01B	AC069368.3::ZNF609	2.8	tier2	NA	A0 : B0	A0 : B0	validated
BRCA	TCGA.EW.A6SD.01A	AC103810.1::STXBP4	1.2	tier2	5UTR-CDS	A0 : B0	A0 : B0	NA
BRCA	TCGA.D8.A27E.01A	AC110285.1::BAIAP2	0.1	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.A2.A0YT.01A	AC110491.1::ARL6	0.8	tier1	NA	A0 : B0	A0 : B0	NA
BRCA	TCGA.BH.A18T.01A	AC113191.1::NKAIN3	1.6	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.E9.A22D.01A	ACACA::ACCN1	0.031	tier1	Out-of-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.3C.AALI.01A	ACACA::TANC2	0.03	tier2	Out-of-frame	A0 : B1	A0 : B0	NA
BRCA	TCGA.AN.A0XP.01A	ACACB::UNG	0.2	tier3	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.A2.A1FW.01A	ACBD6::IVNS1ABP	3.0	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.AC.A3QQ.01A	ACBD6::PGBD2	0.59	tier1	CDS-5UTR	A0 : B0	A0 : B0	NA
BRCA	TCGA.AN.A0G0.01A	ACER3::NARS2	0.66	tier1	Out-of-frame	A0 : B0	A0 : B0	validated
BRCA	TCGA.A2.A0EQ.01A	ACER3::NRL	0.15	tier2	CDS-5UTR	A0 : B0	A0 : B0	NA
BRCA	TCGA.A1.A0SM.01A	ACER3::THRSP	1.1	tier4	CDS-3UTR	A0 : B0	A0 : B0	non-validated
BRCA	TCGA.E2.A109.01A	ACER3::UVRAG	0.026	tier1	In-frame	A0 : B0	A0 : B0	validated
BRCA	TCGA.D8.A1JM.01A	ACLY::DNAJC7	1.1	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.LL.A6FR.01A	ACLY::DNAJC7	1.1	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.OL.A5RY.01A	ACO1::TYRP1	0.36	tier1	5UTR-5UTR	A0 : B0	A0 : B0	NA
BRCA	TCGA.BH.A18T.01A	ACO2::TEF	1.5	tier1	Out-of-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.D8.A1X5.01A	ACO2::ZC3H7B	0.049	tier1	In-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.E9.A1R7.01A	ACOT11::C8B	1.9	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.D8.A1XZ.01A	ACOT7::FUCA1	0.61	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.C8.A12Q.01A	ACOT7::KLHL21	0.56	tier2	Out-of-frame	A0 : B0	A0 : B0	non-validated
BRCA	TCGA.A2.A0T1.01A	ACOT7::NSMCE2	100.0	tier1	In-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.A2.A04W.01A	ACOT7::TTC34	0.22	tier4	Out-of-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.A7.A13D.01B	ACOT9::APOO	1.5	tier1	CDS-3UTR	A0 : B0	A0 : B0	non-validated
BRCA	TCGA.AC.A8OQ.01A	ACOT9::APOO	1.5	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.A8.A07I.01A	ACSF2::SPAG9	2.3	tier1	In-frame	A1 : B1	A0 : B0	validated
BRCA	TCGA.AC.A8OQ.01A	ACSL3::MOGAT1	0.73	tier2	5UTR-CDS	A0 : B0	A0 : B0	NA
BRCA	TCGA.D8.A1XJ.01A	ACSS1::PHACTR3	0.039	tier1	In-frame	A0 : B1	A0 : B0	NA
BRCA	TCGA.C8.A134.01A	ACSS2::GSS	0.21	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.OL.A66I.01A	ACTB::HLA-DQB1	0.12	tier4	3UTR-5UTR	A0 : B0	A0 : B0	NA
BRCA	TCGA.A2.A0CW.01A	ACTB::KIAA0182	0.51	tier3	NA	A0 : B0	A0 : B0	NA
BRCA	TCGA.BH.A18T.01A	ACTB::RNF216	0.11	tier1	5UTR-CDS	A0 : B0	A0 : B0	NA
BRCA	TCGA.BH.A0DQ.01A	ACTN1::SCGN	0.68	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.AN.A0G0.01A	ACTN2::CHRM3	0.13	tier1	CDS-5UTR	A1 : B0	A0 : B0	non-validated
BRCA	TCGA.BH.A0B9.01A	ACTN4::CAPZB	0.03	tier1	In-frame	A0 : B1	A0 : B0	non-validated
BRCA	TCGA.E2.A150.01A	ACTN4::FTO	0.17	tier1	In-frame	A1 : B1	A1 : B1	NA
BRCA	TCGA.A7.A0DA.01A	ADAM10::FIZ1	1.7	tier1	CDS-5UTR	A1 : B0	A0 : B0	NA
BRCA	TCGA.C8.A8HP.01A	ADAM10::PLAC9	0.48	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.E2.A105.01A	ADAM18::LSM1	0.34	tier2	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.AN.A0FX.01A	ADAM32::ZNF251	0.9	tier2	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.D8.A1JK.01A	ADAM9::CLYBL	0.78	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.WT.AB41.01A	ADAM9::PROSC	4.2	tier1	In-frame	A0 : B1	A0 : B0	NA
BRCA	TCGA.AC.A2B8.01A	ADAMTS10::MLLT1	0.016	tier1	In-frame	A0 : B1	A0 : B0	NA
BRCA	TCGA.AN.A0AR.01A	ADAMTS12::C1QTNF3	1.1	tier2	Out-of-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.AN.A0XU.01A	ADAMTS12::ZFR	1.5	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.AC.A2BM.01A	ADAMTS13::LHX2	0.12	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.A7.A4SD.01A	ADAMTS16::ETV6	1.4	tier1	In-frame	A0 : B1	A0 : B0	NA
BRCA	TCGA.BH.A0BP.01A	ADAMTS17::PCDHA8	0.096	tier2	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.A1.A0SO.01A	ADAP1::C8orf38	0.061	tier3	CDS-5UTR	A0 : B0	A0 : B0	NA
BRCA	TCGA.A7.A5ZV.01A	ADC::PHIP	1.6	tier1	In-frame	A0 : B1	A0 : B1	NA
BRCA	TCGA.A8.A07I.01A	ADCK2::DPP6	1.4	tier1	In-frame	A0 : B1	A0 : B0	validated
BRCA	TCGA.AR.A0TW.01A	ADCY1::EYA4	0.21	tier1	CDS-5UTR	A0 : B0	A0 : B0	NA
BRCA	TCGA.A2.A25D.01A	ADCY5::PTPLB	0.091	tier1	Out-of-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.E9.A1RH.01A	ADCY9::GLYR1	1.0	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.LL.A5YP.01A	ADCY9::PRSS27	0.16	tier2	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.S3.AA0Z.01A	ADCY9::RMI2	1.4	tier2	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.A2.A0T7.01A	ADCY9::SRL	0.44	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.AO.A0J2.01A	ADD1::SH3BP2	0.13	tier3	5UTR-CDS	A0 : B1	A0 : B0	validated
BRCA	TCGA.BH.A1EY.01A	ADD3::XPNPEP1	4.8	tier1	5UTR-CDS	A0 : B0	A0 : B0	NA
BRCA	TCGA.GI.A2C9.01A	ADI1::KHDRBS3	3.3	tier1	In-frame	A0 : B0	A0 : B0	non-validated
BRCA	TCGA.E9.A22E.01A	ADIPOR1::CYB5R1	0.13	tier1	5UTR-CDS	A0 : B0	A0 : B0	NA
BRCA	TCGA.E9.A243.01A	ADIPOR1::RGS8	0.009	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.A8.A07R.01A	ADIPOR2::ERC1	0.032	tier1	5UTR-CDS	A0 : B0	A0 : B0	NA
BRCA	TCGA.E2.A1LL.01A	ADIPOR2::FOXJ2	0.23	tier1	In-frame	A0 : B0	A0 : B0	non-validated
BRCA	TCGA.B6.A0IK.01A	ADIPOR2::WNT5B	0.094	tier1	5UTR-5UTR	A0 : B0	A0 : B0	NA
BRCA	TCGA.AN.A0AJ.01A	ADK::KCNMA1	1.8	tier1	In-frame	A0 : B1	A0 : B0	NA
BRCA	TCGA.BH.A18U.01A	ADK::LRRTM3	0.91	tier1	Out-of-frame	A0 : B0	A0 : B0	validated
BRCA	TCGA.BH.A1EY.01A	ADK::RP11-548K23.11	1.7	tier2	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.D8.A1JI.01A	ADK::SPTAN1	0.58	tier2	CDS-5UTR	A0 : B0	A0 : B0	NA
BRCA	TCGA.AO.A03P.01A	ADK::TTC23	1.0	tier1	CDS-5UTR	A0 : B0	A0 : B0	NA
BRCA	TCGA.A2.A25B.01A	ADNP::DPM1	0.073	tier1	5UTR-CDS	A0 : B0	A0 : B0	non-validated
BRCA	TCGA.A1.A0SJ.01A	ADNP::GHRH	0.12	tier2	5UTR-5UTR	A0 : B0	A0 : B0	NA
BRCA	TCGA.A8.A08J.01A	ADNP::MMP24	0.28	tier3	Out-of-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.A1.A0SJ.01A	ADNP::SYCP2	1.2	tier1	In-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.D8.A1XD.01A	ADNP::ZNF841	0.071	tier1	5UTR-CDS	A0 : B0	A0 : B0	NA
BRCA	TCGA.A7.A2KD.01A	ADNP2::L3MBTL4	0.071	tier1	5UTR-CDS	A0 : B0	A0 : B0	NA
BRCA	TCGA.BH.A1F2.01A	ADNP2::PQLC1	1.7	tier1	Out-of-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.AR.A5QP.01A	ADPRHL2::SHPK	0.72	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.AO.A129.01A	ADRBK1::BAIAP2	0.034	tier1	In-frame	A0 : B1	A0 : B1	NA
BRCA	TCGA.AR.A0TS.01A	ADRBK1::IQGAP1	0.89	tier1	In-frame	A1 : B1	A1 : B0	NA
BRCA	TCGA.A2.A0CL.01A	ADRBK1::POLD4	0.032	tier1	Out-of-frame	A1 : B0	A1 : B0	NA
BRCA	TCGA.A2.A0T3.01A	ADRBK2::SF3A1	0.5	tier1	In-frame	A1 : B1	A0 : B0	NA
BRCA	TCGA.BH.A203.01A	ADSS::SERTAD4	1.8	tier1	CDS-5UTR	A0 : B0	A0 : B0	NA
BRCA	TCGA.A2.A0D2.01A	AFAP1::ABLIM2	0.3	tier1	In-frame	A0 : B0	A0 : B0	validated
BRCA	TCGA.OL.A5D7.01A	AFAP1::ABLIM2	0.3	tier1	In-frame	A1 : B1	A0 : B0	NA
BRCA	TCGA.AC.A2QH.01B	AFF3::ASZ1	0.044	tier1	In-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.B6.A0IH.01A	AFF3::TMEM182	1.0	tier2	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.E2.A1LE.01A	AFF4::FSTL4	0.53	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.AR.A2LR.01A	AGAP1::FAM164A	0.08	tier1	Out-of-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.A7.A0DA.01A	AGAP1::RINT1	2.3	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.A8.A08O.01A	AGAP1::WDR11	0.085	tier1	In-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.AQ.A54N.01A	AGAP3::GIMAP1	0.51	tier1	CDS-5UTR	A1 : B0	A0 : B0	NA
BRCA	TCGA.AQ.A54N.01A	AGAP3::GIMAP2	0.58	tier1	CDS-5UTR	A1 : B0	A0 : B0	NA
BRCA	TCGA.BH.A1F0.01A	AGAP3::TG	0.002	tier1	Out-of-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.AN.A0AM.01A	AGBL4::FAF1	0.05	tier2	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.BH.A0C0.01A	AGPAT2::CDC42SE1	0.049	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.A8.A09Q.01A	AGPAT3::KSR1	0.11	tier1	5UTR-CDS	A0 : B1	A0 : B0	NA
BRCA	TCGA.A8.A07O.01A	AGPAT3::PDXK	1.5	tier1	5UTR-CDS	A0 : B0	A0 : B0	NA
BRCA	TCGA.B6.A0RV.01A	AGR2::ANKS1A	1.4	tier4	NA	A0 : B0	A0 : B0	NA
BRCA	TCGA.BH.A0DK.01A	AGRN::NOC4L	0.12	tier3	In-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.E9.A5FK.01A	AHCYL1::DENND2D	1.0	tier1	In-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.EW.A1IX.01A	AHI1::CHEK2	1.9	tier1	In-frame	A0 : B1	A0 : B0	NA
BRCA	TCGA.A2.A3XS.01A	AHI1::MYB	0.018	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.E2.A1B1.01A	AHNAK::EIF2AK2	1.9	tier3	NA	A0 : B0	A0 : B0	NA
BRCA	TCGA.A8.A09E.01A	AHNAK::RPS6KA4	0.17	tier1	Out-of-frame	A1 : B0	A1 : B0	NA
BRCA	TCGA.AC.A23H.01A	AHNAK::ZNF827	5.0	tier3	3UTR-5UTR	A0 : B0	A0 : B0	NA
BRCA	TCGA.AN.A0FY.01A	AHR::CDK14	0.33	tier1	In-frame	A1 : B0	A1 : B0	NA
BRCA	TCGA.AR.A0TP.01A	AIM1::ARMC2	0.079	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.EW.A1P3.01A	AIM1::MYB	0.089	tier1	NA	A0 : B0	A0 : B0	NA
BRCA	TCGA.A8.A07I.01A	AKAP1::ANKFN1	0.028	tier2	5UTR-CDS	A0 : B0	A0 : B0	validated
BRCA	TCGA.E2.A15H.01A	AKAP1::C17orf67	0.28	tier1	CDS-5UTR	A0 : B0	A0 : B0	validated
BRCA	TCGA.E2.A15H.01A	AKAP1::GGA3	0.55	tier1	5UTR-CDS	A0 : B0	A0 : B0	non-validated
BRCA	TCGA.A8.A09I.01A	AKAP1::WIPF2	0.3	tier2	5UTR-5UTR	A0 : B0	A0 : B0	non-validated
BRCA	TCGA.A8.A06U.01A	AKAP13::CHSY3	0.52	tier2	5UTR-CDS	A0 : B0	A0 : B0	NA
BRCA	TCGA.GM.A2DK.01A	AKAP13::IGF1R	0.038	tier1	5UTR-CDS	A0 : B1	A0 : B0	NA
BRCA	TCGA.EW.A1P0.01A	AKAP13::NRG1	1.5	tier1	Out-of-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.A8.A07L.01A	AKAP8::VMP1	0.078	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.AR.A0TT.01A	AKAP8L::EFCAB3	1.5	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.OL.A5RW.01A	AKAP9::RUNX1	0.93	tier3	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.E9.A1RF.01A	AKD1::FAM184A	0.022	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.A2.A1FW.01A	AKIRIN2::ANKRD55	0.51	tier2	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.BH.A0WA.01A	AL109749.1::AIFM1	0.92	tier3	Out-of-frame	A0 : B1	A0 : B0	non-validated
BRCA	TCGA.GI.A2C9.01A	AL109749.1::ZC4H2	1.1	tier1	In-frame	A0 : B0	A0 : B0	non-validated
BRCA	TCGA.E2.A155.01A	AL137003.1::PTPRK	2.6	tier1	NA	A0 : B0	A0 : B0	NA
BRCA	TCGA.A2.A1FV.01A	AL139022.1::PEBP4	1.1	tier2	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.A8.A09R.01A	AL139022.1::RAB15	1.2	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.C8.A12L.01A	ALCAM::EIF2A	0.37	tier1	In-frame	A1 : B1	A0 : B0	non-validated
BRCA	TCGA.BH.A0BP.01A	ALCAM::YIF1B	1.7	tier1	In-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.AC.A4ZE.01A	ALDH3B2::ODZ4	0.031	tier2	5UTR-CDS	A0 : B0	A0 : B0	NA
BRCA	TCGA.AR.A1AS.01A	ALDOA::FADS2	1.1	tier3	3UTR-CDS	A0 : B0	A0 : B1	NA
BRCA	TCGA.D8.A1X6.01A	ALDOA::MPHOSPH8	1.3	tier3	3UTR-CDS	A0 : B0	A0 : B0	NA
BRCA	TCGA.A2.A0CK.01A	ALDOA::NDUFV1	1.7	tier3	NA	A0 : B0	A0 : B0	NA
BRCA	TCGA.BH.A1FC.01A	ALG14::C1orf194	100.0	tier1	Out-of-frame	A0 : B0	A0 : B0	non-validated
BRCA	TCGA.BH.A0AU.01A	ALG14::NRD1	0.041	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.A2.A0T4.01A	ALG8::NARS2	0.15	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.AC.A6IW.01A	ALPL::FILIP1L	0.11	tier1	NA	A0 : B0	A0 : B0	NA
BRCA	TCGA.B6.A0X7.01A	ALX4::STK33	0.64	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.A8.A09D.01A	AMBRA1::HARBI1	1.3	tier1	5UTR-CDS	A0 : B0	A0 : B0	NA
BRCA	TCGA.D8.A27W.01A	AMFR::ITGAM	2.1	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.BH.A0B9.01A	AMMECR1L::SAP130	0.057	tier1	5UTR-CDS	A0 : B0	A0 : B0	validated
BRCA	TCGA.A8.A06Q.01A	ANAPC16::MICU1	0.1	tier1	5UTR-CDS	A0 : B0	A0 : B0	NA
BRCA	TCGA.E2.A1LL.01A	ANAPC5::KDM2B	0.14	tier1	Out-of-frame	A0 : B0	A0 : B0	non-validated
BRCA	TCGA.E2.A1IH.01A	ANK1::ADAM7	0.024	tier1	In-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.E9.A1N6.01A	ANK3::ATAD1	0.2	tier2	CDS-5UTR	A1 : B0	A0 : B0	NA
BRCA	TCGA.A2.A0CL.01A	ANK3::CDK1	0.29	tier1	CDS-5UTR	A1 : B0	A0 : B0	NA
BRCA	TCGA.AQ.A04L.01B	ANK3::CHN2	1.9	tier1	In-frame	A1 : B1	A0 : B0	NA
BRCA	TCGA.AR.A0TT.01A	ANK3::IFIT5	0.17	tier3	Out-of-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.A7.A26G.01A	ANK3::RHOBTB1	0.68	tier1	CDS-5UTR	A1 : B0	A0 : B0	non-validated
BRCA	TCGA.AQ.A04L.01B	ANK3::SP2	0.47	tier2	Out-of-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.AO.A12D.01A	ANK3::TMPRSS15	0.049	tier2	Out-of-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.E2.A10C.01A	ANK3::WDFY4	0.43	tier1	CDS-5UTR	A1 : B0	A0 : B0	NA
BRCA	TCGA.BH.A0H9.01A	ANKHD1::C5orf32	1.4	tier1	CDS-5UTR	A0 : B0	A0 : B0	NA
BRCA	TCGA.A2.A0CK.01A	ANKHD1::TIAM2	0.6	tier1	In-frame	A1 : B1	A0 : B0	NA
BRCA	TCGA.BH.A0B7.01A	ANKLE2::NHP2L1	2.3	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.GM.A3XL.01A	ANKRD11::LINGO1	0.28	tier1	5UTR-CDS	A0 : B0	A0 : B0	non-validated
BRCA	TCGA.C8.A8HP.01A	ANKRD12::C10orf11	1.3	tier1	5UTR-CDS	A0 : B0	A0 : B0	NA
BRCA	TCGA.A2.A4S3.01A	ANKRD12::MTHFD2L	0.88	tier1	In-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.C8.A1HN.01A	ANKRD17::RPRD1B	0.12	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.C8.A26Y.01A	ANKRD17::WDFY3	1.6	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.AN.A0FZ.01A	ANKRD42::RHOD	0.57	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.AN.A04D.01A	ANKRD46::TMEM222	0.65	tier1	5UTR-CDS	A0 : B0	A0 : B0	validated
BRCA	TCGA.BH.A0B6.01A	ANKS1B::NDUFA12	0.3	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.S3.AA0Z.01A	ANKS3::C16orf71	0.26	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.C8.A138.01A	ANO1::ABCC11	0.24	tier2	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.C8.A1HK.01A	ANO1::ABHD15	0.16	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.A8.A097.01A	ANO1::CYP2R1	1.0	tier1	In-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.E9.A228.01A	ANO1::UNC5D	5.2	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.E2.A1L8.01A	ANO6::IAPP	0.12	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.B6.A0X1.01A	ANO9::DEAF1	0.79	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.BH.A1FL.01A	ANXA10::FAM198B	0.021	tier2	Out-of-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.C8.A12P.01A	ANXA2::RNF114	1.1	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.AN.A0AS.01A	ANXA7::LGALS12	1.7	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.AC.A5EH.01A	AP1M1::RAB8A	0.18	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.BH.A0BR.01A	AP1M1::ZNF93	2.9	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.A2.A25D.01A	AP2A1::DHDH	0.13	tier1	Out-of-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.A8.A07L.01A	AP2A2::TMEM80	0.073	tier1	In-frame	A1 : B0	A1 : B0	NA
BRCA	TCGA.A7.A26G.01A	APBA2::GABRB3	2.7	tier1	5UTR-CDS	A0 : B0	A0 : B0	non-validated
BRCA	TCGA.A2.A0T0.01A	APBB2::DMD	0.37	tier2	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.E9.A22E.01A	APBB2::NSUN7	1.2	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.E2.A15D.01A	APIP::C10orf35	0.62	tier2	CDS-5UTR	A0 : B0	A0 : B0	NA
BRCA	TCGA.AN.A0FS.01A	APLP2::KCNJ5	0.79	tier1	CDS-5UTR	A0 : B0	A0 : B0	NA
BRCA	TCGA.OL.A5D6.01A	APOD::CLDN7	0.97	tier3	3UTR-5UTR	A0 : B0	A0 : B0	NA
BRCA	TCGA.AQ.A04J.01A	APOLD1::CDKN1B	0.44	tier1	CDS-3UTR	A0 : B0	A0 : B0	validated
BRCA	TCGA.A8.A08P.01A	APP::RCAN1	1.3	tier1	In-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.C8.A1HL.01A	APPBP2::DNAH17	0.91	tier4	Out-of-frame	A0 : B0	A1 : B0	NA
BRCA	TCGA.EW.A2FS.01A	APPBP2::SEPT9	0.29	tier3	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.AC.A62V.01A	APPBP2::WISP2	4.5	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.C8.A12Q.01A	APPL1::SPATA12	0.52	tier1	CDS-5UTR	A0 : B0	A0 : B0	non-validated
BRCA	TCGA.E2.A15H.01A	APTX::GNE	4.8	tier1	Out-of-frame	A0 : B0	A0 : B0	validated
BRCA	TCGA.A2.A3XY.01A	AQP1::TYK2	0.12	tier3	3UTR-5UTR	A0 : B0	A0 : B0	NA
BRCA	TCGA.AN.A03Y.01A	ARAP1::MOGAT2	0.66	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.AR.A24L.01A	ARAP1::RP11-831H9.11	1.4	tier1	5UTR-CDS	A0 : B0	A0 : B0	NA
BRCA	TCGA.A1.A0SM.01A	ARAP1::USP35	0.25	tier2	5UTR-5UTR	A0 : B0	A0 : B0	non-validated
BRCA	TCGA.A1.A0SQ.01A	ARFGAP1::SPAG4	0.62	tier2	5UTR-CDS	A0 : B0	A0 : B0	NA
BRCA	TCGA.BH.A0H7.01A	ARFGAP1::UQCC	0.45	tier1	In-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.BH.A0B9.01A	ARFGAP2::CELF1	0.81	tier1	Out-of-frame	A1 : B0	A0 : B0	validated
BRCA	TCGA.A8.A09N.01A	ARFGEF1::CPA6	1.7	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.E2.A14Y.01A	ARFGEF1::CPA6	1.7	tier1	In-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.AN.A0XV.01A	ARFGEF1::RP11-366K18.3	0.032	tier2	Out-of-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.BH.A0H6.01A	ARFGEF2::CNIH2	5.8	tier1	In-frame	A1 : B0	A0 : B0	non-validated
BRCA	TCGA.AR.A0TX.01A	ARFGEF2::FAM19A5	0.83	tier1	In-frame	A1 : B0	A0 : B0	non-validated
BRCA	TCGA.A8.A09D.01A	ARFGEF2::TSHZ2	0.71	tier1	In-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.D8.A13Z.01A	ARFIP1::FGB	0.069	tier1	In-frame	A1 : B1	A0 : B0	NA
BRCA	TCGA.A8.A08J.01A	ARHGAP10::TMEM184C	0.49	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.E2.A105.01A	ARHGAP12::PPPDE2	2.3	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.S3.AA0Z.01A	ARHGAP17::TNRC6A	1.0	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.E9.A248.01A	ARHGAP18::C6orf204	0.096	tier1	CDS-5UTR	A1 : B0	A0 : B0	NA
BRCA	TCGA.BH.A0B7.01A	ARHGAP21::ASPHD2	0.86	tier2	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.AR.A0TX.01A	ARHGAP23::ACCN1	0.22	tier1	In-frame	A0 : B0	A0 : B0	non-validated
BRCA	TCGA.EW.A1J1.01A	ARHGAP23::TEX14	0.32	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.E2.A1IO.01A	ARHGAP24::C4orf14	0.047	tier1	In-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.A8.A06Z.01A	ARHGAP32::AHNAK	1.9	tier1	Out-of-frame	A1 : B1	A0 : B1	NA
BRCA	TCGA.EW.A2FW.01A	ARHGAP32::C20orf24	1.4	tier2	In-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.AO.A0J5.01A	ARHGAP32::FCHSD2	0.46	tier1	CDS-5UTR	A1 : B0	A0 : B0	NA
BRCA	TCGA.D8.A1XZ.01A	ARHGAP35::COL22A1	0.047	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.A1.A0SJ.01A	ARHGAP42::PGR	0.19	tier2	In-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.A2.A0CT.01A	ARHGAP44::DNAH2	0.17	tier1	In-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.E2.A1LL.01A	ARHGDIB::RP11-677C1.2	0.52	tier1	Out-of-frame	A0 : B0	A0 : B0	non-validated
BRCA	TCGA.B6.A402.01A	ARHGEF10L::CSDE1	2.3	tier1	CDS-5UTR	A0 : B0	A0 : B0	NA
BRCA	TCGA.B6.A3ZX.01A	ARHGEF10L::PADI4	1.3	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.BH.A8FY.01A	ARHGEF11::ALDH9A1	0.016	tier2	Out-of-frame	A1 : B0	A0 : B1	NA
BRCA	TCGA.BH.A18T.01A	ARHGEF11::ETV3	0.37	tier1	CDS-5UTR	A1 : B0	A0 : B0	NA
BRCA	TCGA.D8.A1JF.01A	ARHGEF11::ETV3	0.37	tier1	Out-of-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.A8.A09G.01A	ARHGEF12::SIK3	0.18	tier1	Out-of-frame	A1 : B1	A0 : B0	NA
BRCA	TCGA.BH.A0AU.01A	ARHGEF17::EP300	0.22	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.GM.A2DF.01A	ARHGEF17::WDR74	0.14	tier2	CDS-5UTR	A0 : B0	A0 : B0	non-validated
BRCA	TCGA.AQ.A04L.01B	ARHGEF18::C11orf67	0.003	tier1	Out-of-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.E9.A1NG.01A	ARHGEF18::MYO9B	0.01	tier1	CDS-5UTR	A1 : B0	A0 : B0	NA
BRCA	TCGA.A2.A04P.01A	ARHGEF19::ANO7L1	0.12	tier1	NA	A0 : B0	A0 : B0	non-validated
BRCA	TCGA.AR.A256.01A	ARHGEF2::SSR2	0.17	tier1	In-frame	A0 : B0	A0 : B0	non-validated
BRCA	TCGA.AO.A0J6.01A	ARHGEF3::ACP6	0.88	tier1	In-frame	A0 : B0	A0 : B0	non-validated
BRCA	TCGA.C8.A12Q.01A	ARHGEF3::HESX1	1.5	tier3	NA	A0 : B0	A0 : B0	non-validated
BRCA	TCGA.5L.AAT0.01A	ARHGEF3::LTF	1.5	tier1	NA	A0 : B0	A0 : B0	NA
BRCA	TCGA.A7.A13D.01B	ARID1A::DHDDS	0.99	tier3	In-frame	A1 : B0	A0 : B0	non-validated
BRCA	TCGA.C8.A12V.01A	ARID1A::THBS3	0.96	tier1	In-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.E2.A14T.01A	ARID1A::YTHDF2	0.073	tier1	In-frame	A1 : B1	A0 : B0	NA
BRCA	TCGA.E9.A248.01A	ARID1B::AL590867.1	0.1	tier1	CDS-5UTR	A1 : B0	A0 : B0	NA
BRCA	TCGA.E9.A248.01A	ARID1B::PLEKHG1	2.1	tier1	In-frame	A0 : B1	A0 : B0	NA
BRCA	TCGA.BH.A1F6.01A	ARID1B::SNX9	1.2	tier1	In-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.B6.A0RH.01A	ARID2::TMPRSS2	3.5	tier2	NA	A0 : B0	A0 : B0	NA
BRCA	TCGA.AR.A1AV.01A	ARID2::ZNF641	0.035	tier1	In-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.BH.A0AU.01A	ARID3A::PMEPA1	0.14	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.BH.A203.01A	ARID4B::B3GALNT2	0.3	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.OL.A5D8.01A	ARID4B::PCNXL2	0.035	tier1	In-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.AO.A12G.01A	ARID5B::ABLIM1	0.18	tier1	In-frame	A1 : B0	A1 : B0	NA
BRCA	TCGA.A7.A13D.01B	ARIH2::DHX30	0.21	tier1	In-frame	A0 : B1	A0 : B0	validated
BRCA	TCGA.AC.A23C.01A	ARIH2::SLC25A20	0.33	tier1	5UTR-CDS	A0 : B1	A0 : B0	NA
BRCA	TCGA.C8.A134.01A	ARL15::CDC42SE2	1.3	tier3	CDS-5UTR	A0 : B0	A0 : B0	NA
BRCA	TCGA.A7.A4SE.01A	ARMC1::PEX19	0.11	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.C8.A1HN.01A	ARMC1::RB1CC1	0.21	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.A7.A4SE.01A	ARMC1::RP11-574F21.3	0.99	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.EW.A1J2.01A	ARNT2::PDLIM5	1.4	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.AO.A124.01A	ARNTL::TEAD1	0.95	tier1	5UTR-CDS	A0 : B1	A0 : B0	non-validated
BRCA	TCGA.A7.A4SD.01A	ARNTL2::ITPR2	0.52	tier2	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.E9.A1RH.01A	ARPC4-TTLL3::GRM7	0.37	tier1	NA	A0 : B0	A0 : B0	NA
BRCA	TCGA.E2.A155.01A	ARRB1::ANKFN1	3.5	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.A2.A3KC.01A	ARRB1::GAB2	0.017	tier1	Out-of-frame	A0 : B1	A0 : B0	non-validated
BRCA	TCGA.A7.A6VV.01A	ARRB1::GDPD5	0.14	tier1	CDS-5UTR	A0 : B0	A0 : B0	NA
BRCA	TCGA.B6.A3ZX.01A	ARRB1::GDPD5	0.14	tier1	CDS-5UTR	A0 : B0	A0 : B0	NA
BRCA	TCGA.A2.A04U.01A	ARRB1::PAK1	1.5	tier3	CDS-5UTR	A0 : B0	A0 : B0	NA
BRCA	TCGA.S3.A6ZG.01A	ARRB1::PICALM	5.2	tier1	In-frame	A0 : B1	A0 : B1	NA
BRCA	TCGA.A8.A0A9.01A	ARRB1::RASSF3	0.41	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.A1.A0SM.01A	ARRB1::UVRAG	0.49	tier1	Out-of-frame	A0 : B0	A0 : B0	non-validated
BRCA	TCGA.3C.AALI.01A	ARSG::CDK12	0.3	tier3	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.A8.A09Q.01A	ARSG::CEP112	0.13	tier1	Out-of-frame	A0 : B1	A0 : B0	NA
BRCA	TCGA.D8.A27G.01A	ARSG::TEX2	7.8	tier2	CDS-5UTR	A0 : B0	A0 : B0	NA
BRCA	TCGA.C8.A27A.01A	ASAP1::CLVS1	0.78	tier1	In-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.B6.A0X1.01A	ASAP1::KCNH1	0.67	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.AR.A1AH.01A	ASB1::TRAF3IP1	3.7	tier2	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.A8.A07O.01A	ASCC1::MICU1	0.006	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.E9.A1RB.01A	ASCC1::MICU1	0.006	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.OL.A66I.01A	ASCC1::MICU1	0.006	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.A8.A06T.01A	ASCC3::ATL1	0.83	tier2	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.AN.A0AM.01A	ASCC3::GRIK2	0.41	tier1	In-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.A8.A07I.01A	ASH1L::AIM2	0.65	tier1	5UTR-5UTR	A0 : B0	A0 : B0	non-validated
BRCA	TCGA.A7.A26G.01A	ASH1L::ARHGEF2	0.54	tier1	CDS-5UTR	A0 : B0	A0 : B0	non-validated
BRCA	TCGA.AR.A0TT.01A	ASH1L::FAM78B	0.016	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.A8.A090.01A	ASH1L::GATAD2B	0.92	tier1	CDS-5UTR	A1 : B0	A1 : B0	NA
BRCA	TCGA.AN.A0XV.01A	ASH1L::GPATCH4	0.24	tier3	CDS-5UTR	A0 : B0	A0 : B0	NA
BRCA	TCGA.E2.A15A.01A	ASH2L::C20orf72	0.067	tier2	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.E2.A15A.06A	ASH2L::C20orf72	0.067	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.LL.A7T0.01A	ASH2L::ZFYVE28	0.12	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.A2.A3KD.01A	ASPH::RSF1	0.18	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.D8.A140.01A	ASPSCR1::COL5A3	0.13	tier1	Out-of-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.A8.A0A4.01A	ASS1::NCS1	1.2	tier2	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.A2.A0EW.01A	ASTN2::C9orf29	2.3	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.B6.A0I9.01A	ASTN2::PNMT	0.056	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.BH.A1FM.01A	ASXL1::PDRG1	0.099	tier1	3UTR-CDS	A0 : B0	A0 : B0	NA
BRCA	TCGA.A7.A13D.01B	ASXL1::TM9SF4	0.083	tier1	CDS-5UTR	A1 : B0	A0 : B0	validated
BRCA	TCGA.BH.A1FD.01A	ASXL1::XKR7	0.21	tier3	Out-of-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.AR.A0U0.01A	ASXL2::FKBP8	0.56	tier1	CDS-5UTR	A1 : B0	A0 : B0	NA
BRCA	TCGA.AR.A24H.01A	ASXL2::HSPH1	0.027	tier1	Out-of-frame	A0 : B1	A0 : B1	NA
BRCA	TCGA.AN.A0FJ.01A	ASXL2::KIF3C	0.14	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.BH.A203.01A	ATAD2::FAM178B	2.0	tier3	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.E9.A243.01A	ATAD2::PODXL	0.34	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.OL.A66I.01A	ATAD2::RAD51B	0.042	tier2	Out-of-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.LL.A740.01A	ATAD2B::ITSN2	0.15	tier2	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.E9.A229.01A	ATE1::ZRANB1	0.002	tier1	In-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.EW.A1PH.01A	ATF6::SH2D1B	0.19	tier1	In-frame	A0 : B0	A0 : B0	non-validated
BRCA	TCGA.OL.A66P.01A	ATF7::ATP5G2	0.12	tier1	In-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.C8.A12Z.01A	ATF7::SPATS2	0.23	tier1	In-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.A8.A09D.01A	ATG13::TSPAN18	0.71	tier1	5UTR-5UTR	A0 : B0	A0 : B0	NA
BRCA	TCGA.E9.A1RH.01A	ATG14::C14orf33	0.25	tier1	CDS-5UTR	A1 : B0	A0 : B0	NA
BRCA	TCGA.AN.A04C.01A	ATG5::QRSL1	0.47	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.AR.A1AU.01A	ATG5::TMEM200A	0.047	tier1	5UTR-5UTR	A0 : B0	A0 : B0	NA
BRCA	TCGA.E2.A14N.01A	ATL2::DHX57	0.041	tier1	Out-of-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.GI.A2C9.01A	ATL2::DHX57	0.041	tier3	Out-of-frame	A1 : B0	A0 : B0	non-validated
BRCA	TCGA.A8.A07R.01A	ATL2::HNRPLL	0.43	tier1	In-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.D8.A143.01A	ATP11A::TUBGCP3	0.35	tier1	In-frame	A0 : B1	A0 : B0	NA
BRCA	TCGA.E2.A1LI.01A	ATP11B::MED10	0.3	tier1	In-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.E2.A1II.01A	ATP11C::PREX1	0.48	tier1	Out-of-frame	A0 : B1	A0 : B0	NA
BRCA	TCGA.A2.A0ST.01A	ATP1A1::NOTCH2	5.3	tier1	Out-of-frame	A1 : B0	A1 : B0	NA
BRCA	TCGA.AR.A1AM.01A	ATP1A1::RABEP1	0.72	tier4	NA	A0 : B0	A0 : B0	NA
BRCA	TCGA.E2.A15A.01A	ATP1A1::VANGL1	4.1	tier1	In-frame	A1 : B0	A1 : B0	NA
BRCA	TCGA.A2.A0CT.01A	ATP2A3::FGF3	0.15	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.A2.A0CZ.01A	ATP2B1::IKBIP	0.066	tier3	Out-of-frame	A1 : B1	A0 : B0	NA
BRCA	TCGA.E9.A5UO.01A	ATP2B1::KCNC2	0.12	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.AO.A03L.01A	ATP5B::ANKS1A	1.4	tier4	NA	A0 : B0	A0 : B0	non-validated
BRCA	TCGA.B6.A0I1.01A	ATP6V0A1::ATF6	0.091	tier1	Out-of-frame	A0 : B0	A1 : B0	non-validated
BRCA	TCGA.EW.A1J1.01A	ATP6V0A1::MSI2	0.026	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.A8.A06U.01A	ATP6V1A::OPA1	0.3	tier1	5UTR-CDS	A0 : B1	A0 : B0	NA
BRCA	TCGA.AC.A3OD.01B	ATP6V1H::ST8SIA4	1.1	tier2	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.C8.A1HI.01A	ATP8B4::ATPBD4	0.48	tier3	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.A2.A0CL.01A	ATR::DBR1	0.018	tier2	In-frame	A0 : B0	A1 : B0	NA
BRCA	TCGA.A2.A1FW.01A	ATRN::RNF24	1.0	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.BH.A18K.01A	ATRNL1::ATAD1	0.4	tier3	CDS-5UTR	A0 : B0	A0 : B0	NA
BRCA	TCGA.E9.A5UO.01A	ATXN1::HMGCLL1	0.96	tier1	5UTR-CDS	A0 : B0	A0 : B0	NA
BRCA	TCGA.A8.A0AD.01A	ATXN1::PCTP	0.25	tier1	5UTR-CDS	A0 : B0	A0 : B0	NA
BRCA	TCGA.BH.A0H7.01A	ATXN10::APPL1	2.5	tier1	In-frame	A0 : B1	A0 : B0	NA
BRCA	TCGA.AR.A1AP.01A	ATXN2::CCDC59	1.2	tier2	NA	A0 : B0	A0 : B0	NA
BRCA	TCGA.C8.A132.01A	ATXN2::GIT2	0.92	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.AR.A24R.01A	AURKA::PCK1	0.85	tier1	CDS-5UTR	A1 : B0	A0 : B0	NA
BRCA	TCGA.BH.A1F6.01A	AURKB::MYH10	0.029	tier3	5UTR-CDS	A0 : B1	A0 : B1	NA
BRCA	TCGA.E9.A1NA.01A	AXIN1::IFT140	0.2	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.D8.A140.01A	AXIN1::ITCH	2.9	tier1	CDS-5UTR	A0 : B0	A0 : B0	NA
BRCA	TCGA.A8.A09I.01A	AXIN1::ITFG3	0.42	tier1	5UTR-5UTR	A0 : B0	A0 : B0	non-validated
BRCA	TCGA.BH.A28Q.01A	AZGP1::FAR1	1.5	tier4	NA	A0 : B0	A0 : B0	NA
BRCA	TCGA.E9.A5UO.01A	AZGP1::TYK2	1.1	tier3	NA	A0 : B0	A0 : B0	NA
BRCA	TCGA.BH.A0HB.01A	B3GALTL::MTUS2	2.5	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.AR.A24K.01A	B3GALTL::STK33	1.6	tier1	CDS-5UTR	A0 : B0	A0 : B0	NA
BRCA	TCGA.BH.A6R9.01A	B3GNTL1::CLCN4	0.33	tier4	CDS-5UTR	A0 : B0	A0 : B0	NA
BRCA	TCGA.A2.A0EY.01A	B3GNTL1::LRRC3C	0.52	tier2	Out-of-frame	A0 : B0	A0 : B0	non-validated
BRCA	TCGA.AO.A0J2.01A	B4GALNT3::CCDC77	0.43	tier1	Out-of-frame	A1 : B1	A0 : B0	validated
BRCA	TCGA.AN.A0AM.01A	B4GALNT3::SLCO4A1	0.14	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.LL.A9Q3.01A	B4GALT1::AQP7	0.071	tier4	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.A7.A2KD.01A	B4GALT1::FAM201A	0.012	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.AO.A0JD.01A	B4GALT1::NFX1	2.4	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.BH.A0H9.01A	B4GALT5::GNAS	0.62	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.AO.A12F.01A	B4GALT7::NSD1	1.0	tier1	In-frame	A0 : B1	A0 : B0	NA
BRCA	TCGA.AN.A0AR.01A	BAG2::ZNF451	0.59	tier1	Out-of-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.EW.A1PH.01A	BAG4::NEDD8	100.0	tier1	In-frame	A0 : B0	A0 : B0	non-validated
BRCA	TCGA.EW.A1PH.01A	BAG4::NEDD8-MDP1	100.0	tier1	NA	A0 : B0	A0 : B0	non-validated
BRCA	TCGA.A2.A1G4.01A	BAG4::TP53INP1	0.26	tier1	CDS-5UTR	A0 : B0	A0 : B0	NA
BRCA	TCGA.AC.A2BM.01A	BAG4::ZMAT4	0.39	tier1	CDS-5UTR	A0 : B0	A0 : B0	NA
BRCA	TCGA.AN.A0AL.01A	BAG6::LY6G5C	1.6	tier1	In-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.BH.A0AV.01A	BAI2::SPOCD1	0.063	tier1	Out-of-frame	A0 : B0	A0 : B0	validated
BRCA	TCGA.EW.A2FS.01A	BAX::DHDH	0.18	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.D8.A140.01A	BAZ2A::PRIM1	0.46	tier1	In-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.B6.A0IO.01A	BBS4::TTC23	4.2	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.GM.A2DH.01A	BBX::RB1	0.44	tier1	5UTR-CDS	A0 : B1	A0 : B1	NA
BRCA	TCGA.A7.A5ZV.01A	BCAR3::ODF3L2	0.18	tier1	Out-of-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.EW.A1OX.01A	BCAS3::ABCA8	0.74	tier1	In-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.B6.A0IN.01A	BCAS3::APPBP2	0.24	tier1	Out-of-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.AN.A0FD.01A	BCAS3::AXIN2	1.9	tier2	CDS-5UTR	A1 : B0	A0 : B0	NA
BRCA	TCGA.C8.A12P.01A	BCAS3::BRIP1	0.17	tier1	In-frame	A1 : B1	A0 : B0	NA
BRCA	TCGA.AR.A0TQ.01A	BCAS3::CYTH1	0.43	tier1	In-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.A2.A1FW.01A	BCAS3::DISP1	0.61	tier2	CDS-5UTR	A1 : B0	A0 : B0	NA
BRCA	TCGA.E2.A14P.01A	BCAS3::GH2	0.14	tier3	In-frame	A0 : B0	A0 : B0	non-validated
BRCA	TCGA.AN.A0XW.01A	BCAS3::GRIK2	0.63	tier1	In-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.A2.A0CZ.01A	BCAS3::HEATR6	0.14	tier3	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.AR.A250.01A	BCAS3::KAT7	0.042	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.A1.A0SJ.01A	BCAS3::NFS1	1.2	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.AN.A0XW.01A	BCAS3::POLD4	0.033	tier1	In-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.A8.A09G.01A	BCAS3::PRKAA2	4.2	tier1	Out-of-frame	A1 : B1	A0 : B0	NA
BRCA	TCGA.A8.A09I.01A	BCAS3::RAD51C	2.1	tier1	In-frame	A0 : B0	A0 : B0	non-validated
BRCA	TCGA.AN.A0XW.01A	BCAS3::RAD51C	2.1	tier1	Out-of-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.BH.A18R.01A	BCAS3::RNF169	0.29	tier1	In-frame	A1 : B0	A0 : B0	non-validated
BRCA	TCGA.BH.A18R.01A	BCAS3::SHANK2	0.095	tier1	Out-of-frame	A1 : B1	A0 : B0	non-validated
BRCA	TCGA.UL.AAZ6.01A	BCAS3::TANC2	0.43	tier4	In-frame	A1 : B1	A0 : B0	NA
BRCA	TCGA.A8.A08J.01A	BCAS3::VMP1	0.97	tier1	In-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.E9.A1NA.01A	BCAS3::WIPI1	3.0	tier1	Out-of-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.A8.A07W.01A	BCAS4::PTPN1	0.17	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.A2.A04U.01A	BCAT1::ITPR2	0.9	tier1	In-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.E2.A1LL.01A	BCAT1::RECQL	1.1	tier2	CDS-5UTR	A1 : B0	A0 : B0	non-validated
BRCA	TCGA.B6.A0RS.01A	BCL2L11::ACOXL	1.2	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.BH.A18Q.01A	BCL2L11::AFMID	0.78	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.A7.A13D.01A	BCL2L14::ETV6	1.9	tier1	In-frame	A0 : B0	A0 : B0	non-validated
BRCA	TCGA.EW.A6SB.01A	BCL2L14::ETV6	1.9	tier1	In-frame	A0 : B1	A0 : B0	NA
BRCA	TCGA.AR.A0U4.01A	BCL3::ATP9B	0.09	tier2	Out-of-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.AR.A2LR.01A	BCL3::IGSF23	0.86	tier2	Out-of-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.AO.A03U.01B	BCL7A::KCNIP3	0.65	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.S3.AA0Z.01A	BCL7C::OTOA	0.26	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.BH.A18V.01A	BCL7C::ZNF720	100.0	tier2	CDS-5UTR	A0 : B0	A0 : B0	NA
BRCA	TCGA.A7.A4SF.01A	BCL9::IVL	0.14	tier1	5UTR-5UTR	A0 : B0	A0 : B0	NA
BRCA	TCGA.A7.A4SF.01A	BCL9::SMCP	0.049	tier3	5UTR-5UTR	A0 : B0	A0 : B0	NA
BRCA	TCGA.D8.A1JM.01A	BCLAF1::MAP7	0.29	tier1	5UTR-CDS	A0 : B0	A0 : B0	NA
BRCA	TCGA.C8.A27A.01A	BCR::MOV10L1	0.29	tier3	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.C8.A12Q.01A	BCR::MRVI1	0.13	tier1	In-frame	A0 : B1	A0 : B0	non-validated
BRCA	TCGA.A2.A0SW.01A	BDP1::CWC27	0.019	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.E2.A1BD.01A	BGN::KIAA2026	7.3	tier3	3UTR-CDS	A0 : B0	A0 : B0	NA
BRCA	TCGA.E2.A1L9.01A	BGN::ZNF827	0.18	tier3	3UTR-5UTR	A0 : B0	A0 : B0	NA
BRCA	TCGA.E9.A22E.01A	BIN3::PEBP4	100.0	tier2	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.LL.A7SZ.01A	BIRC6::ABCC11	2.7	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.LL.A7SZ.01A	BIRC6::FAM82A1	0.37	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.S3.A6ZF.01A	BLNK::PIK3AP1	0.3	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.A8.A08I.01A	BLNK::ZNF536	3.8	tier1	In-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.AR.A0TT.01A	BLZF1::BRP44	0.017	tier2	In-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.A2.A0ET.01A	BMPR1B::MCC	0.13	tier1	5UTR-CDS	A0 : B0	A0 : B0	NA
BRCA	TCGA.AN.A0FZ.01A	BMS1::PLEKHA7	0.72	tier1	Out-of-frame	A0 : B1	A0 : B0	NA
BRCA	TCGA.A8.A084.01A	BOK::MYEOV2	0.086	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.BH.A0E0.01A	BOP1::CYHR1	0.012	tier1	CDS-5UTR	A1 : B0	A1 : B0	non-validated
BRCA	TCGA.E2.A14V.01A	BPIFB1::SNAPC5	100.0	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.D8.A27N.01A	BPTF::ABCC3	2.1	tier1	Out-of-frame	A1 : B0	A1 : B0	NA
BRCA	TCGA.E2.A15H.01A	BPTF::CCDC40	1.7	tier1	Out-of-frame	A0 : B1	A0 : B0	non-validated
BRCA	TCGA.E2.A14V.01A	BPTF::FAM117A	0.95	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.C8.A12P.01A	BPTF::PIP4K2B	0.19	tier1	Out-of-frame	A1 : B1	A1 : B0	NA
BRCA	TCGA.B6.A0I9.01A	BPTF::PITPNC1	0.85	tier1	Out-of-frame	A1 : B0	A1 : B0	NA
BRCA	TCGA.BH.A1F6.01A	BPTF::PITPNC1	0.85	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.GI.A2C9.01A	BPTF::PITPNC1	0.85	tier1	In-frame	A0 : B0	A0 : B0	non-validated
BRCA	TCGA.3C.AALI.01A	BPTF::PLXDC1	0.059	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.E9.A22D.01A	BPTF::RGS9	0.083	tier1	In-frame	A1 : B0	A1 : B0	NA
BRCA	TCGA.OL.A5D8.01A	BRE::AC013480.1	0.07	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.C8.A134.01A	BRE::PRKCE	1.3	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.E2.A15E.06A	BRE::PTPN1	100.0	tier1	In-frame	A0 : B0	A0 : B0	non-validated
BRCA	TCGA.A8.A08I.01A	BRF1::FOXN3	0.42	tier1	5UTR-5UTR	A0 : B0	A0 : B0	NA
BRCA	TCGA.C8.A275.01A	BRIP1::CUEDC1	1.2	tier2	CDS-5UTR	A0 : B0	A0 : B0	NA
BRCA	TCGA.E2.A1B0.01A	BRPF3::HLA-DMA	2.9	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.AC.A6IW.01A	BRWD1::ABCA10	0.24	tier2	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.E9.A1NF.01A	BRWD1::ABCG1	0.46	tier1	In-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.A2.A0CW.01A	BRWD1::DYRK1A	0.069	tier1	Out-of-frame	A0 : B1	A0 : B0	NA
BRCA	TCGA.A8.A08P.01A	BRWD1::LCA5L	0.34	tier1	CDS-5UTR	A0 : B0	A0 : B0	NA
BRCA	TCGA.A8.A09Q.01A	BRWD1::WDR4	0.98	tier3	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.C8.A26X.01A	BSDC1::YARS	0.15	tier1	In-frame	A1 : B1	A0 : B1	NA
BRCA	TCGA.LL.A5YO.01A	BSPRY::NPM1	0.042	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.BH.A0BP.01A	BTBD1::MESP1	0.28	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.EW.A1PF.01A	BTBD3::GCNT2	2.9	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.AC.A23H.01A	BTBD7::UBR7	0.091	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.A2.A0YJ.01A	BTBD9::ATAD1	1.4	tier1	CDS-5UTR	A0 : B0	A0 : B0	NA
BRCA	TCGA.AN.A0FT.01A	BTBD9::C6orf127	0.051	tier2	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.A8.A0AD.01A	BTBD9::FARS2	0.046	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.D8.A13Z.01A	BTN2A1::HIST1H2AC	2.2	tier1	CDS-3UTR	A0 : B0	A0 : B0	NA
BRCA	TCGA.E2.A109.01A	BTN3A2::HIST1H2AC	0.17	tier1	3UTR-3UTR	A0 : B0	A0 : B0	non-validated
BRCA	TCGA.BH.A18U.01A	BTRC::CDH23	0.2	tier2	Out-of-frame	A0 : B0	A0 : B0	non-validated
BRCA	TCGA.AO.A128.01A	BUB1B::EIF2AK4	0.061	tier3	Out-of-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.D8.A1XT.01A	BUB1B::EIF2AK4	0.061	tier1	Out-of-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.OL.A66I.01A	BUB1B::EIF2AK4	0.061	tier4	In-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.D8.A1JG.01B	BUD13::APOA5	0.52	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.A8.A09N.01A	C10orf11::ADK	100.0	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.AO.A03P.01A	C10orf11::CYP2C19	100.0	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.LD.A7W5.01A	C10orf11::RUFY2	1.9	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.AC.A8OQ.01A	C10orf18::ABI1	0.094	tier1	5UTR-CDS	A0 : B1	A0 : B0	NA
BRCA	TCGA.C8.A12K.01A	C10orf18::NET1	0.086	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.E9.A248.01A	C10orf18::NET1	0.086	tier1	Out-of-frame	A0 : B1	A0 : B0	NA
BRCA	TCGA.AO.A1KT.01A	C10orf26::ADAMTS2	0.28	tier1	In-frame	A0 : B1	A0 : B0	NA
BRCA	TCGA.AR.A1AO.01A	C10orf26::ARL3	0.51	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.D8.A1JK.01A	C10orf46::EIF3A	4.6	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.E2.A106.01A	C10orf57::CREB3L3	0.19	tier4	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.A7.A0DB.01C	C10orf68::CCDC7	0.11	tier1	5UTR-CDS	A0 : B1	A0 : B0	NA
BRCA	TCGA.A7.A0DC.01B	C10orf68::CCDC7	0.11	tier1	5UTR-CDS	A0 : B1	A0 : B0	NA
BRCA	TCGA.A7.A13D.01B	C10orf68::CCDC7	0.11	tier1	5UTR-CDS	A0 : B1	A0 : B0	non-validated
BRCA	TCGA.A7.A13E.01A	C10orf68::CCDC7	0.11	tier1	5UTR-CDS	A0 : B1	A0 : B0	NA
BRCA	TCGA.A7.A13G.01B	C10orf68::CCDC7	0.11	tier1	5UTR-CDS	A0 : B1	A0 : B0	NA
BRCA	TCGA.A7.A26E.01A	C10orf68::CCDC7	0.11	tier1	5UTR-CDS	A0 : B1	A0 : B0	NA
BRCA	TCGA.A7.A26I.01B	C10orf68::CCDC7	0.11	tier1	5UTR-CDS	A0 : B1	A0 : B0	NA
BRCA	TCGA.A7.A26J.01B	C10orf68::CCDC7	0.11	tier1	5UTR-CDS	A0 : B1	A0 : B0	non-validated
BRCA	TCGA.AC.A2QH.01B	C10orf68::CCDC7	0.11	tier1	5UTR-CDS	A0 : B1	A0 : B0	NA
BRCA	TCGA.AC.A3OD.01B	C10orf68::CCDC7	0.11	tier1	5UTR-CDS	A0 : B1	A0 : B0	NA
BRCA	TCGA.AC.A3QQ.01A	C10orf68::CCDC7	0.11	tier1	5UTR-CDS	A0 : B1	A0 : B0	NA
BRCA	TCGA.A8.A091.01A	C11orf30::BBS9	0.98	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.LD.A7W6.01A	C11orf30::LRP5	100.0	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.XX.A899.01A	C11orf30::SHANK2	0.004	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.A2.A0ES.01A	C11orf30::UVRAG	1.0	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.LL.A6FQ.01A	C11orf49::PPME1	0.052	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.A7.A4SA.01A	C11orf57::DLAT	0.17	tier1	Out-of-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.BH.A18T.01A	C11orf80::BBS1	0.99	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.C8.A8HQ.01A	C11orf80::PPP6R3	5.2	tier2	CDS-5UTR	A0 : B0	A0 : B0	NA
BRCA	TCGA.EW.A3U0.01A	C12orf23::RFX4	0.14	tier2	In-frame	A0 : B1	A0 : B0	validated
BRCA	TCGA.C8.A1HO.01A	C12orf51::SBNO1	1.7	tier3	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.C8.A12M.01A	C12orf51::SRRM4	0.11	tier1	Out-of-frame	A0 : B1	A0 : B0	NA
BRCA	TCGA.BH.A0B6.01A	C14orf43::ACOT1	0.14	tier1	5UTR-CDS	A0 : B0	A0 : B0	NA
BRCA	TCGA.A2.A0EW.01A	C14orf45::RGS6	0.34	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.A8.A07C.01A	C14orf45::RP5-1021I20.4	0.15	tier3	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.BH.A0E6.01A	C15orf41::FAM98B	0.4	tier2	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.C8.A27A.01A	C15orf41::LYSMD4	100.0	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.B6.A0IO.01A	C15orf42::ATXN7L1	1.3	tier2	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.A8.A0AD.01A	C16orf45::POMT2	1.3	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.AO.A126.01A	C16orf45::RHBDL2	0.59	tier1	CDS-5UTR	A0 : B0	A0 : B0	NA
BRCA	TCGA.B6.A0RS.01A	C16orf55::DPEP1	0.14	tier1	CDS-5UTR	A0 : B0	A0 : B0	NA
BRCA	TCGA.AR.A0TX.01A	C16orf62::ABCC6P1	0.69	tier2	In-frame	A0 : B0	A0 : B0	non-validated
BRCA	TCGA.AR.A256.01A	C16orf62::TMC5	2.2	tier4	Out-of-frame	A0 : B0	A0 : B0	validated
BRCA	TCGA.A7.A425.01A	C16orf87::ATXN2	0.25	tier2	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.LD.A7W5.01A	C17orf39::FDXR	1.1	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.B6.A0I1.01A	C17orf57::MYL4	100.0	tier1	CDS-5UTR	A0 : B0	A0 : B0	non-validated
BRCA	TCGA.OL.A5RZ.01A	C17orf63::DOPEY2	0.33	tier2	5UTR-5UTR	A0 : B0	A0 : B0	NA
BRCA	TCGA.C8.A275.01A	C17orf63::GIP	1.3	tier2	CDS-5UTR	A0 : B0	A0 : B0	NA
BRCA	TCGA.GI.A2C9.01A	C17orf63::PHF12	0.017	tier1	5UTR-CDS	A0 : B1	A0 : B0	validated
BRCA	TCGA.A8.A09I.01A	C17orf75::TOP2A	0.33	tier1	Out-of-frame	A0 : B1	A0 : B1	validated
BRCA	TCGA.AR.A2LJ.01A	C17orf76::PEMT	1.2	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.LL.A5YP.01A	C17orf85::CAMKK1	1.7	tier1	5UTR-CDS	A0 : B0	A0 : B0	NA
BRCA	TCGA.UL.AAZ6.01A	C18orf1::C18orf19	0.003	tier4	CDS-5UTR	A0 : B0	A0 : B0	NA
BRCA	TCGA.A2.A3XX.01A	C19orf2::IL29	0.93	tier4	5UTR-CDS	A0 : B0	A0 : B0	non-validated
BRCA	TCGA.AN.A0XT.01A	C19orf20::PRKACA	1.3	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.A2.A0EY.01A	C19orf25::MED1	1.6	tier1	In-frame	A0 : B0	A0 : B0	non-validated
BRCA	TCGA.E9.A1RF.01A	C19orf55::IGFLR1	0.31	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.OL.A66I.01A	C19orf6::CCDC25	0.35	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.A8.A08I.01A	C19orf63::MBOAT7	0.052	tier1	CDS-5UTR	A0 : B0	A0 : B0	NA
BRCA	TCGA.B6.A409.01A	C1orf123::ALG6	0.45	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.AR.A1AT.01A	C1orf132::GRIK3	0.65	tier1	NA	A0 : B0	A0 : B0	NA
BRCA	TCGA.AN.A0FT.01A	C1orf132::PROX1	0.56	tier2	NA	A0 : B0	A0 : B0	NA
BRCA	TCGA.EW.A1PB.01A	C1orf132::RPS6KB1	1.3	tier2	NA	A0 : B0	A0 : B0	non-validated
BRCA	TCGA.A2.A25F.01A	C1orf135::PADI1	1.0	tier3	Out-of-frame	A0 : B1	A0 : B0	NA
BRCA	TCGA.BH.A0BW.01A	C1orf198::GXYLT2	0.45	tier1	5UTR-CDS	A0 : B0	A0 : B0	non-validated
BRCA	TCGA.A2.A0T2.01A	C1orf9::C1orf105	0.72	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.C8.A278.01A	C1orf9::DARS2	2.6	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.A8.A07U.01A	C1orf9::DNM3	0.46	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.OL.A5D7.01A	C1orf9::ZCWPW2	1.3	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.A8.A08L.01A	C20orf112::COMMD7	0.41	tier1	Out-of-frame	A0 : B0	A0 : B0	non-validated
BRCA	TCGA.E9.A5UP.01A	C20orf112::COMMD7	0.41	tier1	5UTR-CDS	A0 : B0	A0 : B0	NA
BRCA	TCGA.AR.A254.01A	C20orf177::PRPF6	1.9	tier1	5UTR-CDS	A0 : B0	A0 : B0	NA
BRCA	TCGA.E2.A1IH.01A	C20orf177::SLC13A2	1.7	tier2	5UTR-5UTR	A0 : B0	A0 : B0	NA
BRCA	TCGA.AR.A1AO.01A	C20orf194::CEACAM16	1.3	tier3	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.A2.A1FW.01A	C20orf194::TDRD10	0.004	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.E2.A14Z.01A	C20orf196::NCKAP1	1.0	tier3	Out-of-frame	A0 : B1	A0 : B1	NA
BRCA	TCGA.AR.A0U3.01A	C20orf29::RNF24	2.7	tier2	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.C8.A273.01A	C20orf43::PARD6B	0.077	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.BH.A0H7.01A	C20orf43::TSHZ2	1.6	tier1	CDS-3UTR	A0 : B0	A0 : B0	NA
BRCA	TCGA.A8.A09Q.01A	C21orf63::CEP112	0.87	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.BH.A0B9.01A	C21orf63::MRAP	0.86	tier1	Out-of-frame	A0 : B0	A0 : B0	non-validated
BRCA	TCGA.A1.A0SO.01A	C2CD2::ZNF295	0.011	tier4	CDS-5UTR	A0 : B0	A0 : B0	NA
BRCA	TCGA.A8.A091.01A	C2CD3::ABCA13	1.3	tier1	Out-of-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.A7.A4SB.01A	C2CD3::ODZ4	0.086	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.E2.A109.01A	C2CD3::P2RY6	0.051	tier1	CDS-5UTR	A1 : B0	A0 : B0	validated
BRCA	TCGA.AR.A1AV.01A	C2CD3::RNF169	0.58	tier1	In-frame	A1 : B1	A0 : B0	NA
BRCA	TCGA.D8.A27M.01A	C2orf67::ERBB4	0.19	tier2	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.BH.A0HY.01A	C3orf26::XRRA1	0.84	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.E9.A1ND.01A	C3orf52::GCET2	0.022	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.E2.A1L7.01A	C3orf70::TPRG1	1.2	tier1	CDS-5UTR	A0 : B0	A0 : B0	NA
BRCA	TCGA.AO.A03L.01A	C4orf14::N4BP1	0.25	tier2	In-frame	A0 : B0	A0 : B0	non-validated
BRCA	TCGA.AO.A12D.01A	C4orf14::PPP3CA	0.047	tier2	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.A2.A04Q.01A	C5orf42::NUP155	0.94	tier3	Out-of-frame	A1 : B0	A0 : B0	non-validated
BRCA	TCGA.BH.A8FZ.01A	C5orf42::NUP155	0.94	tier1	In-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.BH.A1FE.01A	C6orf203::BEND3	4.4	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.A7.A26G.01A	C7orf10::POU6F2	1.3	tier3	In-frame	A0 : B0	A0 : B0	non-validated
BRCA	TCGA.A2.A04P.01A	C7orf11::TRA2A	100.0	tier1	Out-of-frame	A0 : B0	A0 : B0	non-validated
BRCA	TCGA.AO.A0J5.01A	C7orf44::MRPS24	0.74	tier1	5UTR-CDS	A0 : B0	A0 : B0	NA
BRCA	TCGA.AQ.A04L.01B	C7orf46::MUC4	3.1	tier4	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.AO.A0J4.01A	C8orf76::NKAIN3	1.1	tier4	In-frame	A0 : B0	A0 : B0	non-validated
BRCA	TCGA.AQ.A04J.01A	C8orf83::RAD54B	1.4	tier1	Out-of-frame	A0 : B1	A0 : B0	validated
BRCA	TCGA.A2.A0SX.01A	C9orf150::TYRP1	0.61	tier2	CDS-5UTR	A0 : B0	A0 : B0	NA
BRCA	TCGA.OL.A5DA.01A	C9orf174::NDUFA8	0.84	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.C8.A12L.01A	C9orf3::PTPDC1	0.14	tier2	CDS-5UTR	A0 : B0	A0 : B0	non-validated
BRCA	TCGA.AR.A0U4.01A	C9orf5::C9orf4	0.13	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.BH.A0AV.01A	CA13::RBKS	3.3	tier1	Out-of-frame	A0 : B0	A0 : B0	non-validated
BRCA	TCGA.AR.A256.01A	CA3::MYBL1	3.9	tier2	In-frame	A0 : B0	A0 : B0	validated
BRCA	TCGA.S3.AA12.01A	CABLES1::FTO	0.6	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.A1.A0SN.01A	CABLES1::RBBP8	0.58	tier4	Out-of-frame	A0 : B1	A0 : B0	NA
BRCA	TCGA.A8.A08R.01A	CABLES1::RBBP8	0.58	tier3	In-frame	A0 : B1	A0 : B0	NA
BRCA	TCGA.BH.A1FC.01A	CACHD1::CLIC4	0.82	tier2	In-frame	A0 : B1	A0 : B0	validated
BRCA	TCGA.BH.A1FE.01A	CACNA1A::ZNF44	1.0	tier2	CDS-3UTR	A0 : B0	A0 : B0	NA
BRCA	TCGA.AN.A0FX.01A	CACNA1C::WNT5B	1.1	tier1	CDS-5UTR	A1 : B0	A0 : B0	NA
BRCA	TCGA.GM.A2DD.01A	CACNA1D::PRKCD	0.22	tier1	In-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.D8.A1JM.01A	CACNA1I::TAB1	0.027	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.A2.A0CX.01A	CACNA2D3::FOXP1	0.93	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.BH.A1EN.01A	CACNB1::C11orf30	0.068	tier1	Out-of-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.AR.A0TX.01A	CACNB1::CDC6	0.11	tier2	CDS-5UTR	A1 : B0	A0 : B0	non-validated
BRCA	TCGA.AC.A8OQ.01A	CACNB1::FBXL20	0.36	tier2	In-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.AR.A0TX.01A	CACNB1::MLLT6	0.022	tier1	Out-of-frame	A0 : B0	A0 : B0	non-validated
BRCA	TCGA.UL.AAZ6.01A	CACNB1::TANC2	0.12	tier1	Out-of-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.A2.A0EY.01A	CACNG4::C17orf51	0.023	tier2	In-frame	A0 : B0	A0 : B0	validated
BRCA	TCGA.C8.A12M.01A	CACNG4::VMP1	0.91	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.C8.A26V.01A	CADM2::FHIT	0.018	tier1	CDS-5UTR	A0 : B0	A0 : B0	NA
BRCA	TCGA.E9.A22E.01A	CADPS::FHIT	1.1	tier4	In-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.D8.A1JI.01A	CADPS2::DHCR7	0.58	tier2	CDS-5UTR	A1 : B0	A0 : B0	NA
BRCA	TCGA.A1.A0SN.01A	CADPS2::LMOD2	1.8	tier2	In-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.E9.A244.01A	CALD1::LRGUK	0.51	tier1	5UTR-CDS	A0 : B0	A0 : B0	NA
BRCA	TCGA.D8.A1JK.01A	CAMK1D::C10orf47	0.023	tier1	CDS-5UTR	A1 : B0	A0 : B0	NA
BRCA	TCGA.OL.A6VO.01A	CAMK1D::FAM188A	2.5	tier1	Out-of-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.A8.A09D.01A	CAMK1D::TSPAN18	0.35	tier1	CDS-5UTR	A0 : B0	A0 : B0	NA
BRCA	TCGA.AC.A2BK.01A	CAMSAP1L1::BCAR3	0.84	tier3	CDS-5UTR	A0 : B0	A0 : B0	non-validated
BRCA	TCGA.D8.A1JK.01A	CAMTA1::THAP3	0.48	tier2	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.AN.A0AM.01A	CAND1::TUSC5	0.41	tier1	Out-of-frame	A1 : B0	A1 : B0	NA
BRCA	TCGA.C8.A12M.01A	CANT1::FBXL20	0.11	tier1	5UTR-CDS	A0 : B0	A0 : B0	NA
BRCA	TCGA.C8.A135.01A	CANT1::PSMD3	0.27	tier1	5UTR-CDS	A0 : B1	A0 : B1	NA
BRCA	TCGA.E2.A14N.01A	CAPN6::DCX	1.2	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.BH.A0E2.01A	CAPRIN1::COMMD9	0.021	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.D8.A13Y.01A	CAPRIN2::AMN1	0.34	tier1	CDS-5UTR	A0 : B0	A0 : B0	NA
BRCA	TCGA.AR.A1AN.01A	CAPZA2::MET	0.16	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.E2.A573.01A	CAPZB::SCEL	0.065	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.A8.A097.01A	CARD8::BCKDHA	0.11	tier1	Out-of-frame	A0 : B1	A0 : B0	NA
BRCA	TCGA.E9.A228.01A	CASC3::MED1	0.29	tier1	Out-of-frame	A1 : B1	A0 : B0	NA
BRCA	TCGA.A2.A1G1.01A	CASC3::ZNF254	0.69	tier1	CDS-5UTR	A1 : B0	A0 : B0	NA
BRCA	TCGA.BH.A0E6.01A	CASC4::TGM5	0.003	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.A8.A08L.01A	CASK::EYA2	0.019	tier1	CDS-5UTR	A1 : B0	A0 : B0	non-validated
BRCA	TCGA.E2.A14T.01A	CASK::GLIPR1L1	1.2	tier1	Out-of-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.BH.A18T.01A	CASP8::ALS2CR12	0.06	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.A2.A0SV.01A	CAST::FAM172A	0.058	tier1	5UTR-CDS	A0 : B1	A0 : B0	NA
BRCA	TCGA.JL.A3YW.01A	CATSPERB::ATXN3	3.1	tier1	NA	A0 : B0	A0 : B0	NA
BRCA	TCGA.EW.A1P1.01A	CATSPERB::FBLN5	1.1	tier3	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.A7.A13G.01A	CATSPERB::TC2N	0.66	tier1	NA	A0 : B0	A0 : B0	NA
BRCA	TCGA.AC.A3QQ.01A	CATSPERB::TC2N	0.66	tier4	NA	A0 : B0	A0 : B0	NA
BRCA	TCGA.BH.A0EE.01A	CATSPERB::TRIP11	0.37	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.GM.A2DD.01A	CBL::PHLDB1	0.05	tier3	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.D8.A1XZ.01A	CBX1::SSH2	0.005	tier1	5UTR-CDS	A0 : B0	A0 : B0	NA
BRCA	TCGA.A2.A0CW.01A	CBX3::GARS	0.2	tier1	5UTR-CDS	A0 : B0	A0 : B0	NA
BRCA	TCGA.A8.A09C.01A	CBX4::EFCAB5	1.7	tier1	Out-of-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.A1.A0SQ.01A	CCDC106::CD37	1.4	tier2	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.AO.A0J2.01A	CCDC109B::C4BPA	100.0	tier2	Out-of-frame	A0 : B0	A0 : B0	non-validated
BRCA	TCGA.E2.A150.01A	CCDC129::DEFB118	0.65	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.AO.A12E.01A	CCDC132::CDH1	2.2	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.C8.A12U.01A	CCDC138::GFRAL	0.56	tier2	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.E2.A15F.01A	CCDC14::ADAM19	0.15	tier3	In-frame	A1 : B0	A1 : B0	NA
BRCA	TCGA.C8.A1HO.01A	CCDC148::WDSUB1	0.21	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.S3.A6ZF.01A	CCDC149::GABRB1	0.42	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.3C.AAAU.01A	CCDC158::MSRB3	2.0	tier2	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.BH.A0H9.01A	CCDC165::DLGAP1	0.11	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.A2.A0CZ.01A	CCDC41::LIN7A	0.69	tier1	5UTR-CDS	A0 : B0	A0 : B0	NA
BRCA	TCGA.D8.A140.01A	CCDC6::ANK3	0.072	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.EW.A1P4.01A	CCDC6::ANK3	0.072	tier1	CDS-3UTR	A0 : B0	A0 : B0	NA
BRCA	TCGA.AO.A0J6.01A	CCDC6::UBE2D1	0.32	tier3	In-frame	A1 : B0	A0 : B0	non-validated
BRCA	TCGA.EW.A6S9.01A	CCDC61::FUT2	0.7	tier1	CDS-5UTR	A0 : B0	A0 : B0	NA
BRCA	TCGA.B6.A0RH.01A	CCDC64::GALNT9	0.91	tier1	CDS-5UTR	A0 : B0	A0 : B0	NA
BRCA	TCGA.GM.A3NY.01A	CCDC66::FLNB	1.1	tier2	Out-of-frame	A0 : B1	A0 : B1	NA
BRCA	TCGA.E9.A3QA.01A	CCDC90A::S100A10	0.052	tier2	CDS-5UTR	A0 : B0	A0 : B0	NA
BRCA	TCGA.AR.A1AH.01A	CCDC91::LYRM5	1.3	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.OL.A66P.01A	CCM2::C7orf10	0.6	tier1	Out-of-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.AR.A1AI.01A	CCND3::GUCA1B	1.1	tier1	5UTR-CDS	A0 : B0	A0 : B0	NA
BRCA	TCGA.BH.A1FM.01A	CCNK::C9orf93	0.067	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.AC.A8OR.01A	CCNL2::RP4-758J18.6	0.81	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.AR.A2LR.01A	CCNY::AKAP10	0.55	tier1	In-frame	A1 : B1	A0 : B0	NA
BRCA	TCGA.AR.A256.01A	CCNY::DENND1A	0.2	tier1	Out-of-frame	A1 : B0	A0 : B0	validated
BRCA	TCGA.B6.A0I8.01A	CCNY::ZNF496	0.22	tier1	In-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.E9.A22B.01A	CCT2::CXCR5	1.2	tier3	3UTR-5UTR	A0 : B0	A0 : B0	NA
BRCA	TCGA.AO.A0J3.01A	CCT3::SYT2	2.0	tier1	CDS-5UTR	A1 : B0	A1 : B0	NA
BRCA	TCGA.EW.A6SA.01A	CCT8::LHX4	0.13	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.D8.A27M.01A	CD151::EFCAB4A	0.032	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.E2.A1LE.01A	CD276::PARP16	1.2	tier1	5UTR-CDS	A0 : B0	A0 : B0	NA
BRCA	TCGA.OL.A6VO.01A	CD2AP::MUTED	0.15	tier1	Out-of-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.AN.A0AT.01A	CD302::ALPL	0.34	tier1	CDS-5UTR	A0 : B0	A0 : B0	validated
BRCA	TCGA.A7.A13D.01B	CD59::FBXO3	0.041	tier1	In-frame	A0 : B0	A0 : B0	validated
BRCA	TCGA.BH.A1FD.01A	CD83::LAMA2	0.07	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.GI.A2C9.01A	CD99L2::ARHGAP36	0.4	tier1	In-frame	A0 : B0	A0 : B0	non-validated
BRCA	TCGA.S3.A6ZF.01A	CD99L2::CXorf66	2.0	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.A1.A0SH.01A	CDC27::ST7L	0.077	tier4	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.E9.A228.01A	CDC27::USP32	0.42	tier1	In-frame	A0 : B1	A1 : B0	NA
BRCA	TCGA.E2.A1LK.01A	CDC42BPA::EPRS	2.0	tier1	In-frame	A0 : B0	A0 : B0	non-validated
BRCA	TCGA.A1.A0SO.01A	CDC42BPB::KIAA1409	2.2	tier2	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.A8.A0AD.01A	CDC42EP4::NEUROD2	0.34	tier2	5UTR-5UTR	A0 : B0	A0 : B0	NA
BRCA	TCGA.A2.A0YE.01A	CDC42EP4::SDK2	0.008	tier1	5UTR-CDS	A0 : B0	A0 : B0	NA
BRCA	TCGA.AN.A04A.01A	CDC42EP4::SDK2	0.008	tier1	5UTR-CDS	A0 : B0	A0 : B0	NA
BRCA	TCGA.AC.A5XU.01A	CDC42EP5::CYTH1	0.35	tier2	5UTR-CDS	A0 : B0	A0 : B0	NA
BRCA	TCGA.A2.A1FW.01A	CDC42SE1::TNKS	0.31	tier1	5UTR-CDS	A0 : B0	A0 : B0	NA
BRCA	TCGA.A8.A09Q.01A	CDC5L::PITPNC1	1.7	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.C8.A12L.01A	CDC5L::SPATS1	1.1	tier1	In-frame	A0 : B0	A0 : B0	validated
BRCA	TCGA.E2.A15H.01A	CDC6::RNFT1	2.8	tier1	Out-of-frame	A0 : B0	A0 : B0	non-validated
BRCA	TCGA.LL.A440.01A	CDCA2::ADAM28	0.94	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.AO.A12E.01A	CDH1::CCDC132	2.2	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.B6.A0RN.01A	CDH1::DEXI	0.27	tier1	CDS-3UTR	A1 : B0	A0 : B0	NA
BRCA	TCGA.AQ.A04L.01B	CDH1::NPFFR2	1.2	tier1	In-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.A2.A4S1.01A	CDH11::PRC1	1.0	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.AC.A2QH.01B	CDH2::KIAA1328	0.75	tier1	Out-of-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.AN.A0FJ.01A	CDH23::NSD1	0.42	tier1	In-frame	A0 : B1	A0 : B0	NA
BRCA	TCGA.EW.A1PA.01A	CDH4::NLRP9	5.0	tier2	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.AC.A62V.01A	CDH4::SLA2	0.027	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.3C.AALI.01A	CDK12::AC103810.1	0.13	tier1	CDS-5UTR	A1 : B0	A0 : B0	NA
BRCA	TCGA.C8.A12M.01A	CDK12::AKAP1	1.2	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.3C.AALI.01A	CDK12::FAM20A	0.36	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.AO.A0JM.01A	CDK12::FBXL20	0.021	tier1	In-frame	A0 : B0	A0 : B0	non-validated
BRCA	TCGA.EW.A6S9.01A	CDK12::JAK2	0.003	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.JL.A3YW.01A	CDK13::C7orf36	0.071	tier3	In-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.E2.A105.01A	CDK13::TAX1BP1	0.75	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.AR.A24Z.01A	CDK19::ZFAND3	0.005	tier1	Out-of-frame	A0 : B0	A0 : B0	non-validated
BRCA	TCGA.E2.A14N.01A	CDK5RAP2::ENG	0.68	tier1	In-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.C8.A27A.01A	CDK5RAP3::RNF43	0.37	tier1	Out-of-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.BH.A1FD.01A	CDK7::CCNB1	1.4	tier4	In-frame	A1 : B1	A0 : B0	NA
BRCA	TCGA.C8.A26W.01A	CDK7::RGS20	1.3	tier3	Out-of-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.A8.A07I.01A	CDK8::IKZF3	1.1	tier1	Out-of-frame	A1 : B0	A0 : B0	validated
BRCA	TCGA.B6.A0RS.01A	CDKAL1::HSP90AA1	0.034	tier2	5UTR-CDS	A0 : B1	A0 : B1	NA
BRCA	TCGA.B6.A0I6.01A	CDKAL1::RBM24	0.31	tier1	Out-of-frame	A0 : B0	A0 : B0	validated
BRCA	TCGA.BH.A0B9.01A	CDV3::TMEM108	0.18	tier1	Out-of-frame	A0 : B0	A0 : B0	validated
BRCA	TCGA.LL.A6FQ.01A	CELF1::LUZP2	1.4	tier2	Out-of-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.EW.A1OW.01A	CELF1::MTCH2	0.71	tier1	NA	A0 : B0	A0 : B0	NA
BRCA	TCGA.E2.A14P.01A	CELSR1::CERK	0.15	tier1	Out-of-frame	A0 : B0	A0 : B0	non-validated
BRCA	TCGA.A2.A25F.01A	CELSR1::MAFF	0.083	tier1	CDS-5UTR	A0 : B0	A0 : B0	NA
BRCA	TCGA.A7.A13D.01A	CELSR2::KIAA1324	0.37	tier1	Out-of-frame	A0 : B0	A0 : B0	non-validated
BRCA	TCGA.BH.A208.01A	CELSR2::SARS	2.5	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.AR.A24Z.01A	CENPF::SUSD4	0.37	tier4	5UTR-CDS	A0 : B0	A0 : B0	non-validated
BRCA	TCGA.PL.A8LZ.01A	CENPO::NCOA1	1.2	tier1	3UTR-CDS	A0 : B0	A0 : B0	NA
BRCA	TCGA.A7.A0CG.01A	CENPO::UBXN2A	100.0	tier3	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.E2.A109.01A	CENPV::FERMT1	0.061	tier1	In-frame	A0 : B1	A0 : B0	non-validated
BRCA	TCGA.E9.A1NA.01A	CEP112::OTOA	1.6	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.D8.A1JL.01A	CEP70::STAG1	0.17	tier1	In-frame	A0 : B1	A0 : B0	NA
BRCA	TCGA.AR.A250.01A	CEP95::RBM11	2.3	tier1	5UTR-CDS	A0 : B0	A0 : B0	NA
BRCA	TCGA.BH.A0H7.01A	CERK::SLC25A17	1.3	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.AC.A5XU.01A	CERS4::SPAG17	1.5	tier2	5UTR-CDS	A0 : B0	A0 : B0	NA
BRCA	TCGA.E2.A1LL.01A	CERS5::SAMD11	0.85	tier1	Out-of-frame	A0 : B1	A0 : B0	non-validated
BRCA	TCGA.BH.A0BL.01A	CGGBP1::SCN11A	4.3	tier1	5UTR-CDS	A0 : B0	A0 : B0	NA
BRCA	TCGA.AR.A251.01A	CGNL1::TCF12	0.13	tier1	CDS-3UTR	A0 : B0	A0 : B0	NA
BRCA	TCGA.OL.A5D7.01A	CHAF1A::CCDC94	0.014	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.A8.A06U.01A	CHD2::HOMER2	0.2	tier1	In-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.AO.A12A.01A	CHD4::CLEC9A	0.032	tier1	CDS-5UTR	A0 : B0	A0 : B0	NA
BRCA	TCGA.A1.A0SK.01A	CHD4::DTX1	2.8	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.EW.A1PF.01A	CHD6::CCDC90A	0.47	tier1	5UTR-CDS	A0 : B0	A0 : B0	NA
BRCA	TCGA.C8.A8HR.01A	CHD6::CHRNB4	0.024	tier4	In-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.C8.A12L.01A	CHD6::EFCAB11	0.098	tier1	In-frame	A1 : B0	A1 : B0	non-validated
BRCA	TCGA.E2.A106.01A	CHD6::TSHZ2	0.071	tier4	CDS-3UTR	A0 : B0	A0 : B0	NA
BRCA	TCGA.AQ.A54O.01A	CHD6::WFDC11	0.85	tier2	5UTR-5UTR	A0 : B0	A0 : B0	NA
BRCA	TCGA.AR.A1AU.01A	CHD7::ASPH	0.57	tier1	Out-of-frame	A1 : B1	A0 : B1	NA
BRCA	TCGA.D8.A1JL.01A	CHD7::CCDC58	3.2	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.C8.A27A.01A	CHD7::TACC1	0.069	tier1	CDS-5UTR	A1 : B0	A0 : B0	NA
BRCA	TCGA.PE.A5DD.01A	CHD8::IMPG1	1.7	tier1	Out-of-frame	A1 : B1	A1 : B0	NA
BRCA	TCGA.AN.A0FX.01A	CHD8::RAB2B	0.25	tier1	5UTR-CDS	A0 : B0	A0 : B0	NA
BRCA	TCGA.AO.A128.01A	CHD8::TOX4	0.032	tier1	In-frame	A1 : B0	A1 : B0	NA
BRCA	TCGA.AR.A1AN.01A	CHD9::DLC1	0.25	tier2	Out-of-frame	A0 : B1	A0 : B0	NA
BRCA	TCGA.A8.A081.01A	CHD9::KSR1	0.005	tier1	5UTR-5UTR	A0 : B0	A0 : B0	NA
BRCA	TCGA.B6.A0RU.01A	CHD9::RAD51B	1.1	tier1	In-frame	A1 : B0	A0 : B0	non-validated
BRCA	TCGA.A8.A092.01A	CHD9::SPG7	1.3	tier1	Out-of-frame	A1 : B0	A0 : B0	validated
BRCA	TCGA.A8.A09Q.01A	CHFR::OSBPL8	0.24	tier1	CDS-5UTR	A1 : B0	A0 : B0	NA
BRCA	TCGA.LL.A440.01A	CHKA::PC	0.38	tier1	In-frame	A0 : B1	A0 : B0	NA
BRCA	TCGA.AC.A3OD.01B	CHKA::XRRA1	0.012	tier1	Out-of-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.AR.A255.01A	CHM::ABCB7	0.13	tier1	Out-of-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.AR.A256.01A	CHMP4B::CBFA2T2	0.45	tier1	Out-of-frame	A0 : B0	A0 : B0	validated
BRCA	TCGA.E2.A15H.01A	CHMP5::VMP1	0.038	tier1	In-frame	A0 : B0	A0 : B0	non-validated
BRCA	TCGA.A8.A08L.01A	CHN1::TSGA10	1.2	tier2	CDS-5UTR	A0 : B0	A0 : B0	non-validated
BRCA	TCGA.A7.A6VY.01A	CHPT1::MYBPC1	0.99	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.BH.A0B1.01A	CHRNB3::RB1CC1	1.9	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.UL.AAZ6.01A	CHST8::ZNF146	1.2	tier2	5UTR-5UTR	A0 : B0	A0 : B0	NA
BRCA	TCGA.AO.A03P.01A	CHSY1::SPOCK2	0.25	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.EW.A2FR.01A	CIC::LMNA	0.051	tier3	CDS-5UTR	A0 : B0	A0 : B0	NA
BRCA	TCGA.BH.A1F0.01A	CIC::ZFP57	0.11	tier1	Out-of-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.AC.A23H.01A	CKAP5::VMP1	1.9	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.A2.A0D0.01A	CLASRP::RELB	0.78	tier1	Out-of-frame	A0 : B0	A0 : B0	non-validated
BRCA	TCGA.AN.A04C.01A	CLCN3::SMAD1	0.5	tier1	In-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.AR.A2LR.01A	CLCN3::UBE2D3	0.27	tier1	Out-of-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.S3.AA0Z.01A	CLEC16A::GRIN2A	0.29	tier2	Out-of-frame	A0 : B1	A0 : B0	NA
BRCA	TCGA.D8.A13Y.01A	CLEC16A::LITAF	0.053	tier1	CDS-5UTR	A0 : B0	A0 : B0	NA
BRCA	TCGA.AR.A2LR.01A	CLIC1::HIST1H2BC	100.0	tier1	CDS-3UTR	A0 : B0	A0 : B0	NA
BRCA	TCGA.AC.A8OQ.01A	CLIP1::RSRC2	0.039	tier1	NA	A0 : B0	A0 : B0	NA
BRCA	TCGA.A2.A0YM.01A	CLIP1::SLC24A6	0.69	tier1	Out-of-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.D8.A1Y0.01A	CLIP4::FAM179A	1.9	tier1	CDS-5UTR	A0 : B0	A0 : B0	NA
BRCA	TCGA.AC.A62V.01A	CLK2::CD244	2.3	tier1	Out-of-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.EW.A6SC.01A	CLMN::EVL	0.83	tier1	Out-of-frame	A0 : B1	A0 : B0	NA
BRCA	TCGA.B6.A0X1.01A	CLN6::PAQR5	0.13	tier2	CDS-5UTR	A0 : B0	A0 : B0	NA
BRCA	TCGA.D8.A27G.01A	CLNS1A::AQP11	0.065	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.A8.A09D.01A	CLPB::ARMC4	1.4	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.B6.A0RL.01A	CLPB::C2CD3	0.24	tier1	In-frame	A0 : B1	A0 : B0	NA
BRCA	TCGA.AR.A24K.01A	CLPB::MTUS2	0.55	tier2	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.BH.A0HL.01A	CLPB::PTPN1	0.41	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.LL.A441.01A	CLPB::SHANK2	3.6	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.BH.A0B9.01A	CLPB::STARD10	0.23	tier1	CDS-5UTR	A0 : B0	A0 : B0	non-validated
BRCA	TCGA.A7.A26I.01B	CLPTM1::CYP2A7	0.2	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.AR.A0TU.01A	CLSTN1::CTNNBIP1	0.16	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.AO.A1KQ.01A	CLSTN3::PLCZ1	0.094	tier3	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.B6.A0IE.01A	CLTB::SIL1	0.024	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.AN.A0FD.01A	CLTC::FAM129C	8.4	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.EW.A1J1.01A	CLTC::OTOP3	0.5	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.BH.A18J.01A	CMC1::VPS37C	0.62	tier1	CDS-5UTR	A0 : B0	A0 : B0	NA
BRCA	TCGA.AN.A0FJ.01A	CMIP::CDYL2	0.35	tier1	In-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.A8.A06N.01A	CMPK1::SH2D1B	0.92	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.A2.A0ST.01A	CMTM8::NR1D2	0.015	tier1	Out-of-frame	A0 : B1	A0 : B0	NA
BRCA	TCGA.E2.A155.01A	CMTM8::RAF1	0.14	tier1	CDS-5UTR	A0 : B0	A0 : B0	NA
BRCA	TCGA.C8.A135.01A	CNKSR1::MAN1C1	0.44	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.C8.A12Q.01A	CNNM2::NOTCH4	0.29	tier2	Out-of-frame	A0 : B0	A0 : B0	validated
BRCA	TCGA.BH.A0B9.01A	CNNM2::SUFU	0.062	tier1	Out-of-frame	A0 : B0	A0 : B0	non-validated
BRCA	TCGA.A1.A0SO.01A	CNOT1::RASSF8	1.7	tier1	5UTR-CDS	A0 : B0	A0 : B0	NA
BRCA	TCGA.A8.A08F.01A	CNOT2::NUP107	0.051	tier1	5UTR-CDS	A0 : B1	A0 : B1	NA
BRCA	TCGA.BH.A1EW.01A	CNOT2::PDE3A	1.3	tier1	5UTR-CDS	A0 : B1	A0 : B0	NA
BRCA	TCGA.AN.A0AT.01A	CNOT2::RAB3IP	0.47	tier1	Out-of-frame	A1 : B1	A0 : B0	non-validated
BRCA	TCGA.A7.A4SF.01A	CNOT2::SLC45A4	0.1	tier1	In-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.3C.AAAU.01A	CNOT2::SRGAP1	0.12	tier1	In-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.EW.A1OV.01A	COG2::PCNXL2	0.21	tier3	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.A7.A3IZ.01A	COG5::DNAH7	2.4	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.BH.A0W7.01A	COG5::DPP6	0.022	tier1	In-frame	A0 : B1	A0 : B0	NA
BRCA	TCGA.AC.A2QH.01B	COG5::FOXP2	0.46	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.C8.A130.01A	COG6::LHFP	0.39	tier2	Out-of-frame	A0 : B0	A0 : B0	validated
BRCA	TCGA.C8.A26V.01A	COG6::MAPK8	0.31	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.E2.A15H.01A	COIL::CDR2L	0.33	tier1	Out-of-frame	A1 : B1	A0 : B0	non-validated
BRCA	TCGA.OL.A5RZ.01A	COL11A1::ARL5C	0.24	tier2	CDS-5UTR	A0 : B0	A0 : B0	NA
BRCA	TCGA.AR.A2LR.01A	COL16A1::ATF7IP	0.99	tier1	CDS-5UTR	A0 : B0	A0 : B0	NA
BRCA	TCGA.AC.A2QH.01B	COL1A2::WNT2	0.56	tier2	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.A2.A0CL.01A	COL25A1::CCDC109B	0.77	tier1	NA	A0 : B0	A0 : B0	NA
BRCA	TCGA.A8.A085.01A	COL4A5::RGAG1	1.3	tier1	CDS-5UTR	A0 : B0	A0 : B0	NA
BRCA	TCGA.B6.A0IO.01A	COMMD10::DGKI	0.93	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.AR.A5QN.01A	COPS3::TEKT3	0.36	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.D8.A27H.01A	COQ4::DNM1	0.22	tier1	Out-of-frame	A0 : B0	A0 : B0	non-validated
BRCA	TCGA.AO.A0JD.01A	CORO1C::ANKS1B	1.9	tier2	5UTR-CDS	A0 : B0	A0 : B0	NA
BRCA	TCGA.C8.A12M.01A	CORO1C::C12orf42	0.21	tier1	Out-of-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.D8.A1JT.01A	COX6C::DDX27	0.077	tier4	NA	A0 : B0	A0 : B0	NA
BRCA	TCGA.E9.A1RD.01A	COX6C::EIF2AK2	1.0	tier4	NA	A0 : B0	A0 : B0	NA
BRCA	TCGA.EW.A1PD.01A	COX6C::RGS22	0.12	tier1	5UTR-CDS	A0 : B0	A0 : B0	NA
BRCA	TCGA.BH.A18V.01A	CP::SOX5	0.33	tier1	Out-of-frame	A1 : B1	A0 : B0	NA
BRCA	TCGA.BH.A18V.06A	CP::SOX5	0.33	tier1	Out-of-frame	A1 : B1	A0 : B0	NA
BRCA	TCGA.AR.A0U4.01A	CP::WWTR1	2.9	tier1	CDS-5UTR	A0 : B0	A0 : B0	NA
BRCA	TCGA.AO.A1KR.01A	CPAMD8::HAUS8	0.088	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.AR.A252.01A	CPB1::ANXA1	0.04	tier3	3UTR-5UTR	A0 : B0	A0 : B0	NA
BRCA	TCGA.EW.A2FS.01A	CPB1::AP3S2	1.3	tier3	3UTR-CDS	A0 : B0	A0 : B0	NA
BRCA	TCGA.LL.A5YM.01A	CPB1::ATP5G3	0.34	tier3	3UTR-5UTR	A0 : B0	A0 : B0	NA
BRCA	TCGA.AO.A0JI.01A	CPB1::NDUFV1	100.0	tier3	NA	A0 : B0	A0 : B0	NA
BRCA	TCGA.E9.A1NE.01A	CPB1::SNW1	0.47	tier4	3UTR-CDS	A0 : B0	A0 : B0	NA
BRCA	TCGA.A2.A1FW.01A	CPD::AATF	0.2	tier1	In-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.C8.A273.01A	CPD::SKAP1	1.8	tier1	In-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.OL.A5D8.01A	CPD::TBX2	0.089	tier1	In-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.E2.A10C.01A	CPM::KCNMA1	0.47	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.E2.A9RU.01A	CPSF1::ARHGAP39	0.018	tier1	Out-of-frame	A1 : B0	A1 : B0	NA
BRCA	TCGA.AN.A0FZ.01A	CPSF6::MDM1	0.2	tier1	3UTR-CDS	A0 : B0	A0 : B0	NA
BRCA	TCGA.AN.A0FZ.01A	CPSF6::NAV3	0.055	tier1	3UTR-CDS	A0 : B1	A0 : B0	NA
BRCA	TCGA.A8.A0A7.01A	CPSF6::OSBPL8	0.04	tier2	CDS-5UTR	A1 : B0	A0 : B0	NA
BRCA	TCGA.E2.A15R.01A	CPT1A::ADAM2	0.5	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.EW.A2FW.01A	CPT1A::KCNG1	5.0	tier1	CDS-5UTR	A0 : B0	A0 : B0	NA
BRCA	TCGA.E2.A572.01A	CPT1A::MS4A18	0.63	tier1	NA	A0 : B0	A0 : B0	NA
BRCA	TCGA.C8.A27A.01A	CPT1B::SEC14L3	0.9	tier2	In-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.BH.A0HP.01A	CRBN::GRM7	1.2	tier1	NA	A0 : B0	A0 : B0	NA
BRCA	TCGA.A8.A09Q.01A	CREB1::FASTKD2	0.87	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.C8.A1HM.01A	CREB3L2::SHANK2	0.2	tier1	In-frame	A1 : B1	A0 : B0	NA
BRCA	TCGA.A2.A0YE.01A	CREB5::USP42	0.13	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.B6.A0IA.01A	CREBBP::NUBP1	0.48	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.OL.A66I.01A	CREBBP::ZNF500	0.029	tier4	In-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.A8.A06P.01A	CRHR1::CENPP	0.24	tier3	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.A2.A0CY.01A	CRLF3::ATAD5	0.19	tier3	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.A8.A06X.01A	CRLS1::SEL1L2	3.8	tier2	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.EW.A423.01A	CRTC2::KIAA0907	1.5	tier3	In-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.AO.A1KR.01A	CS::PRIM1	1.9	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.GM.A3XL.01A	CSAD::ITGB7	0.077	tier1	5UTR-5UTR	A0 : B0	A0 : B0	non-validated
BRCA	TCGA.E9.A1ND.01A	CSE1L::ARFGEF2	0.32	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.3C.AALJ.01A	CSE1L::LETM2	0.28	tier1	5UTR-5UTR	A0 : B0	A0 : B0	NA
BRCA	TCGA.BH.A1EV.01A	CSMD2::IFI44L	1.2	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.C8.A27A.01A	CSMD3::RIMS2	0.31	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.E2.A14P.01A	CSNK1E::DNAL4	0.012	tier1	5UTR-5UTR	A0 : B0	A0 : B0	non-validated
BRCA	TCGA.LD.A7W5.01A	CTBP1::POLN	0.15	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.A8.A08L.01A	CTBP2::ADAM12	0.085	tier1	5UTR-CDS	A0 : B0	A0 : B0	non-validated
BRCA	TCGA.BH.A0HB.01A	CTD-2192J16.17::AKAP8L	100.0	tier2	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.AO.A03P.01A	CTD-2192J16.17::WIZ	3.8	tier1	Out-of-frame	A0 : B1	A0 : B0	NA
BRCA	TCGA.D8.A147.01A	CTD-2589C9.4::EHBP1	3.5	tier1	In-frame	A0 : B1	A0 : B0	NA
BRCA	TCGA.OL.A66I.01A	CTD-2589C9.4::FOXR1	0.77	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.AN.A0FJ.01A	CTDSPL::TMCC1	0.28	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.D8.A13Y.01A	CTF1::BCL7C	0.003	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.A2.A3XY.01A	CTIF::SMAD2	2.5	tier1	CDS-5UTR	A1 : B0	A0 : B0	NA
BRCA	TCGA.A2.A1G1.01A	CTIF::WASF2	0.028	tier2	5UTR-5UTR	A0 : B0	A0 : B0	NA
BRCA	TCGA.C8.A26Y.01A	CTNNA3::C14orf166B	0.054	tier2	In-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.A7.A5ZX.01A	CTNNA3::LOH12CR1	0.24	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.AO.A03V.01A	CTNNA3::MGMT	0.7	tier2	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.AR.A1AS.01A	CTNNB1::SLC38A5	0.1	tier3	3UTR-5UTR	A0 : B0	A0 : B0	NA
BRCA	TCGA.E2.A14N.01A	CTNNB1::THRB	0.023	tier1	5UTR-5UTR	A0 : B0	A0 : B0	NA
BRCA	TCGA.C8.A1HN.01A	CTNNBL1::TTI1	0.96	tier1	CDS-5UTR	A0 : B0	A0 : B0	NA
BRCA	TCGA.E9.A244.01A	CTNND1::DDAH2	0.11	tier1	5UTR-CDS	A0 : B0	A0 : B0	NA
BRCA	TCGA.AR.A1AH.01A	CTNND1::TMX2	0.009	tier1	5UTR-CDS	A0 : B1	A0 : B0	NA
BRCA	TCGA.E9.A247.01A	CTNND2::P4HA2	0.19	tier2	CDS-5UTR	A0 : B0	A0 : B0	NA
BRCA	TCGA.A2.A0T7.01A	CTPS2::RBBP7	1.2	tier1	In-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.AN.A0FJ.01A	CTPS2::RBBP7	1.2	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.D8.A27R.01A	CTSH::RASGRF1	0.14	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.A8.A07O.01A	CTTN::ANO1	0.046	tier1	In-frame	A1 : B1	A0 : B0	NA
BRCA	TCGA.E9.A228.01A	CTTN::FOLR1	0.044	tier1	5UTR-5UTR	A0 : B0	A0 : B0	NA
BRCA	TCGA.AR.A2LK.01A	CTTN::PLEKHA5	0.76	tier3	NA	A0 : B0	A0 : B0	non-validated
BRCA	TCGA.A2.A0EQ.01A	CTTN::PSME2	0.047	tier2	5UTR-CDS	A0 : B0	A0 : B0	NA
BRCA	TCGA.B6.A0IN.01A	CUL1::GIMAP5	0.26	tier2	CDS-5UTR	A0 : B0	A0 : B0	NA
BRCA	TCGA.E9.A1NE.01A	CUL3::IRS1	0.034	tier1	CDS-3UTR	A1 : B0	A1 : B0	NA
BRCA	TCGA.A2.A0CZ.01A	CUL5::RAB39	0.41	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.A8.A06U.01A	CUL5::SHANK2	0.048	tier1	In-frame	A0 : B1	A0 : B0	NA
BRCA	TCGA.C8.A12K.01A	CUTC::C19orf57	1.5	tier1	Out-of-frame	A0 : B1	A0 : B0	NA
BRCA	TCGA.A2.A0T7.01A	CUX1::MARCH10	1.6	tier1	In-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.AR.A0U3.01A	CWC25::FBXO47	0.66	tier2	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.E9.A228.01A	CWC25::MED24	0.32	tier1	CDS-5UTR	A1 : B0	A0 : B0	NA
BRCA	TCGA.3C.AALI.01A	CWC25::PRKAR1A	0.31	tier1	CDS-5UTR	A1 : B0	A0 : B0	NA
BRCA	TCGA.3C.AALI.01A	CWC25::SLC35B1	0.7	tier1	Out-of-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.OL.A66P.01A	CXCL16::TEKT1	3.4	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.C8.A12P.01A	CYB561::GNA13	2.5	tier1	5UTR-CDS	A0 : B0	A0 : B0	NA
BRCA	TCGA.AO.A0J5.01A	CYB561::USP32	0.79	tier1	5UTR-CDS	A0 : B1	A0 : B0	NA
BRCA	TCGA.S3.A6ZF.01A	CYB5R4::CNTN6	4.4	tier2	CDS-5UTR	A0 : B0	A0 : B0	NA
BRCA	TCGA.UL.AAZ6.01A	CYFIP1::ACACA	2.6	tier1	In-frame	A1 : B1	A0 : B1	NA
BRCA	TCGA.E2.A158.01A	CYFIP1::TUBGCP5	0.077	tier1	Out-of-frame	A1 : B0	A1 : B0	NA
BRCA	TCGA.D8.A27N.01A	CYTH1::MRC2	0.2	tier1	NA	A0 : B0	A0 : B0	NA
BRCA	TCGA.A8.A09Q.01A	CYTH3::MAD1L1	0.14	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.A2.A0T1.01A	DAB2IP::HTN3	0.64	tier1	CDS-5UTR	A1 : B0	A0 : B0	NA
BRCA	TCGA.BH.A0H7.01A	DAG1::ZNF589	2.4	tier1	5UTR-CDS	A0 : B0	A0 : B0	NA
BRCA	TCGA.OL.A66I.01A	DAGLA::C11orf66	0.002	tier1	CDS-5UTR	A0 : B0	A0 : B0	NA
BRCA	TCGA.A8.A09X.01A	DAP::SNX9	0.35	tier1	In-frame	A0 : B0	A0 : B0	validated
BRCA	TCGA.B6.A0I8.01A	DAPK1::GRIN2D	0.09	tier4	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.AC.A2FB.01A	DBF4B::DYNC2H1	5.1	tier1	Out-of-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.AC.A2BK.01A	DBNDD1::C19orf20	0.09	tier1	Out-of-frame	A0 : B0	A0 : B0	non-validated
BRCA	TCGA.AN.A0XV.01A	DCAF12::CNBD1	0.7	tier2	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.AN.A0AS.01A	DCAF5::RAB5B	0.2	tier1	CDS-5UTR	A1 : B0	A0 : B0	NA
BRCA	TCGA.A7.A26G.01A	DCAF6::MPZL1	0.6	tier1	In-frame	A0 : B1	A0 : B0	non-validated
BRCA	TCGA.C8.A137.01A	DCAF6::MPZL1	0.6	tier2	Out-of-frame	A1 : B1	A1 : B0	NA
BRCA	TCGA.BH.A18R.01A	DCAF7::VMP1	1.7	tier1	CDS-5UTR	A1 : B0	A0 : B0	non-validated
BRCA	TCGA.C8.A12Q.01A	DCAKD::PLCD3	0.26	tier1	5UTR-CDS	A0 : B1	A0 : B0	non-validated
BRCA	TCGA.BH.A1F2.01A	DCK::GRSF1	0.18	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.A2.A0CW.01A	DCLK1::RCBTB1	0.28	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.A8.A09V.01A	DCLK1::SERPINE3	0.56	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.AO.A0JM.01A	DCUN1D1::CCDC50	0.2	tier1	In-frame	A0 : B0	A0 : B0	non-validated
BRCA	TCGA.AC.A6IW.01A	DDAH1::ZNHIT6	0.002	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.AR.A256.01A	DDB1::C11orf10	0.94	tier2	CDS-3UTR	A0 : B0	A0 : B0	validated
BRCA	TCGA.BH.A18V.01A	DDR2::GAB1	3.2	tier1	Out-of-frame	A1 : B1	A0 : B0	NA
BRCA	TCGA.C8.A132.01A	DDX31::AK8	1.2	tier3	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.AR.A1AY.01A	DDX39B::PRPH2	0.019	tier1	Out-of-frame	A0 : B0	A0 : B0	validated
BRCA	TCGA.A2.A25B.01A	DDX42::BRIP1	0.052	tier1	In-frame	A1 : B1	A0 : B1	non-validated
BRCA	TCGA.AN.A0FW.01A	DDX42::DCAF7	0.89	tier1	5UTR-CDS	A0 : B0	A0 : B0	NA
BRCA	TCGA.A1.A0SN.01A	DDX42::RPS6KB1	0.22	tier1	5UTR-CDS	A0 : B0	A0 : B0	NA
BRCA	TCGA.E9.A1RH.01A	DDX5::ART1	2.1	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.BH.A1EV.01A	DDX52::TMIGD1	3.3	tier2	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.D8.A1XK.01A	DDX54::IQCD	1.1	tier3	In-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.EW.A1P1.01A	DDX6::FOXR1	2.3	tier4	Out-of-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.D8.A1JG.01B	DEAF1::PDDC1	0.39	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.LD.A9QF.01A	DEK::NUP210L	0.72	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.D8.A1JI.01A	DENND1A::CADPS2	0.31	tier2	In-frame	A1 : B1	A0 : B0	NA
BRCA	TCGA.A2.A0T1.01A	DENND1A::LRRC69	0.64	tier1	Out-of-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.BH.A0DD.01A	DENND1B::FAM190A	0.034	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.OK.A5Q2.01A	DENND1B::RRP15	0.045	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.AR.A0TP.01A	DENND2C::AMPD1	1.8	tier3	5UTR-CDS	A0 : B0	A0 : B0	NA
BRCA	TCGA.A8.A08G.01A	DENND5A::PGPEP1L	0.92	tier1	Out-of-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.D8.A1XT.01A	DENND5A::SBF2	0.031	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.AO.A12D.01A	DENND5B::NUP54	0.8	tier2	Out-of-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.E2.A1IO.01A	DEPDC5::CDH19	0.35	tier1	CDS-5UTR	A0 : B0	A0 : B0	NA
BRCA	TCGA.D8.A140.01A	DEPDC5::SFI1	0.019	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.E9.A1RH.01A	DEPTOR::ENPP2	0.3	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.EW.A1J6.01A	DERA::LRP6	0.05	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.A7.A26G.01A	DGCR2::CLTCL1	0.27	tier1	Out-of-frame	A1 : B0	A0 : B0	validated
BRCA	TCGA.A7.A4SC.01A	DGCR2::CLTCL1	0.27	tier1	Out-of-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.BH.A0EE.01A	DGCR2::PPPDE2	0.66	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.A8.A083.01A	DGCR2::SEC63	0.007	tier3	NA	A0 : B0	A0 : B0	NA
BRCA	TCGA.A8.A084.01A	DGKD::SP140	2.5	tier1	Out-of-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.C8.A275.01A	DGKE::KRT222	0.063	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.E2.A15A.01A	DGKH::MED13L	1.5	tier3	Out-of-frame	A0 : B1	A0 : B0	NA
BRCA	TCGA.E2.A15A.06A	DGKH::MED13L	1.5	tier1	Out-of-frame	A0 : B1	A0 : B0	NA
BRCA	TCGA.AC.A8OQ.01A	DGUOK::C2orf78	0.43	tier1	In-frame	A0 : B1	A0 : B0	NA
BRCA	TCGA.GM.A2DB.01A	DHCR7::AP000867.1	0.027	tier1	CDS-3UTR	A0 : B0	A0 : B0	NA
BRCA	TCGA.AR.A0TW.01A	DHX35::DNTTIP1	0.043	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.LL.A7SZ.01A	DHX57::DNAJC5B	0.82	tier1	5UTR-5UTR	A0 : B0	A0 : B0	NA
BRCA	TCGA.C8.A12P.01A	DHX57::SOS1	1.5	tier3	In-frame	A0 : B1	A0 : B0	NA
BRCA	TCGA.AN.A0FY.01A	DIAPH3::TDRD3	0.042	tier1	In-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.AO.A0J2.01A	DIP2A::PRH1	0.15	tier1	CDS-3UTR	A1 : B0	A0 : B0	validated
BRCA	TCGA.AO.A0J2.01A	DIP2A::PRR4	0.5	tier1	In-frame	A1 : B0	A0 : B0	validated
BRCA	TCGA.D8.A1JL.01A	DIP2C::YY1	0.54	tier1	In-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.A1.A0SK.01A	DIS3L2::SPHKAP	0.86	tier2	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.BH.A18U.01A	DIS3L2::UBE2E3	2.4	tier1	In-frame	A0 : B0	A0 : B0	validated
BRCA	TCGA.A1.A0SO.01A	DIXDC1::GAB2	0.11	tier1	In-frame	A1 : B1	A0 : B0	NA
BRCA	TCGA.E9.A229.01A	DLG5::PCDH15	0.7	tier1	In-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.D8.A147.01A	DLGAP1::RAB31	0.88	tier2	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.AC.A62V.01A	DLGAP4::TUBD1	0.44	tier3	In-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.A8.A09R.01A	DLGAP5::L2HGDH	1.3	tier2	5UTR-CDS	A0 : B0	A0 : B0	NA
BRCA	TCGA.BH.A0BC.01A	DMC1::DNAL4	0.44	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.OL.A5D7.01A	DNAH1::ALAS1	0.027	tier1	5UTR-CDS	A0 : B0	A0 : B0	NA
BRCA	TCGA.S3.AA17.01A	DNAJB12::CTNNA3	0.5	tier1	Out-of-frame	A1 : B1	A0 : B0	NA
BRCA	TCGA.AO.A03V.01A	DNAJB12::SLC25A16	0.022	tier1	In-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.A8.A081.01A	DNAJC1::DCLRE1C	0.079	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.B6.A0IH.01A	DNAJC1::PLEKHF2	2.6	tier2	CDS-5UTR	A0 : B0	A0 : B0	NA
BRCA	TCGA.AC.A8OQ.01A	DNAJC17::INO80	2.8	tier3	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.AR.A1AV.01A	DNAJC22::NTN4	0.34	tier1	5UTR-CDS	A0 : B0	A0 : B0	NA
BRCA	TCGA.GM.A2DF.01A	DNAJC3::GPC6	0.53	tier2	Out-of-frame	A1 : B0	A0 : B0	validated
BRCA	TCGA.AC.A8OQ.01A	DNASE2::TRMT1	0.046	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.AN.A0FJ.01A	DNER::TRIP12	0.062	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.GM.A2DB.01A	DNM2::ILF3	0.35	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.UU.A93S.01A	DNM2::ILF3	0.35	tier1	Out-of-frame	A1 : B1	A0 : B1	NA
BRCA	TCGA.D8.A1JL.01A	DNM2::PPAN-P2RY11	0.54	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.OL.A5D6.01A	DNM2::SLC44A2	0.057	tier1	In-frame	A1 : B1	A0 : B0	NA
BRCA	TCGA.UU.A93S.01A	DNM2::TGIF1	0.61	tier1	CDS-5UTR	A1 : B0	A1 : B0	NA
BRCA	TCGA.AN.A0FJ.01A	DNMT1::ICAM3	1.2	tier1	Out-of-frame	A1 : B0	A1 : B0	NA
BRCA	TCGA.D8.A1X9.01A	DNTTIP2::GCLM	2.6	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.AR.A2LL.01A	DOCK1::APBA1	0.022	tier1	CDS-5UTR	A0 : B0	A0 : B0	NA
BRCA	TCGA.AN.A0AS.01A	DOCK1::MGMT	0.42	tier1	Out-of-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.C8.A1HN.01A	DOCK1::PCDH15	0.64	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.A2.A04U.01A	DOCK1::PPAPDC1A	1.3	tier1	In-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.AR.A24Z.01A	DOCK7::INADL	0.63	tier1	Out-of-frame	A0 : B0	A0 : B0	non-validated
BRCA	TCGA.AR.A24Z.01A	DOCK7::PPP1R12B	0.81	tier2	Out-of-frame	A0 : B0	A0 : B0	non-validated
BRCA	TCGA.AC.A62Y.01A	DOLPP1::SPTAN1	0.17	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.EW.A2FR.01A	DOLPP1::TBC1D13	0.3	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.E2.A1B5.01A	DOPEY2::SH3BGR	0.34	tier4	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.BH.A0EE.01A	DOPEY2::TRPM2	0.49	tier1	In-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.OL.A66I.01A	DOT1L::EPB41L2	0.008	tier1	CDS-5UTR	A1 : B0	A0 : B0	NA
BRCA	TCGA.BH.A42T.01A	DPF2::TRIM49L2	0.21	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.BH.A0B2.01A	DPM1::EZR	0.13	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.A7.A13D.01A	DPP3::PACS1	1.7	tier1	In-frame	A0 : B0	A0 : B0	validated
BRCA	TCGA.D8.A1Y2.01A	DPP8::C15orf42	0.05	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.A8.A091.01A	DPY19L1::NRXN2	1.2	tier4	Out-of-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.3C.AAAU.01A	DPY19L2::MRPL1	0.21	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.E2.A14Z.01A	DPYD::EDIL3	0.061	tier1	Out-of-frame	A0 : B1	A0 : B0	NA
BRCA	TCGA.BH.A1EU.01A	DPYD::STAB2	0.031	tier1	In-frame	A1 : B1	A1 : B0	NA
BRCA	TCGA.B6.A401.01A	DPYSL2::RP11-360L9.4	100.0	tier1	NA	A0 : B0	A0 : B0	NA
BRCA	TCGA.EW.A1OZ.01A	DRG2::ZNF624	0.29	tier3	Out-of-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.BH.A1EY.01A	DSCR3::BACH1	0.062	tier1	NA	A0 : B0	A0 : B0	NA
BRCA	TCGA.E2.A1LG.01A	DSCR3::IGSF5	3.3	tier1	Out-of-frame	A0 : B0	A0 : B0	non-validated
BRCA	TCGA.C8.A130.01A	DSCR3::MACROD2	0.015	tier1	Out-of-frame	A0 : B0	A0 : B0	non-validated
BRCA	TCGA.AN.A04A.01A	DST::KIAA0319L	1.2	tier1	Out-of-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.C8.A1HN.01A	DSTN::TCFL5	0.59	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.E9.A1R6.01A	DTNA::ZNF521	1.2	tier3	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.BH.A18V.06A	DTNB::ASXL2	0.79	tier2	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.BH.A18T.01A	DTNB::RBKS	2.1	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.D8.A1JP.01A	DTNBP1::DNAH8	0.98	tier3	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.C8.A12V.01A	DTNBP1::RSBN1L	0.005	tier3	Out-of-frame	A1 : B1	A0 : B0	NA
BRCA	TCGA.D8.A1XZ.01A	DTWD1::C15orf33	0.19	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.A1.A0SJ.01A	DTX4::CCDC102B	1.9	tier2	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.E2.A15T.01A	DUS2L::UNC5C	0.7	tier1	In-frame	A0 : B1	A0 : B0	NA
BRCA	TCGA.AR.A0TT.01A	DUSP12::NAV1	0.59	tier1	In-frame	A0 : B1	A0 : B0	NA
BRCA	TCGA.A8.A09I.01A	DUSP14::EME1	1.6	tier1	5UTR-5UTR	A0 : B0	A0 : B0	validated
BRCA	TCGA.D8.A140.01A	DUSP7::PBRM1	0.021	tier3	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.D8.A142.01A	DYM::CTIF	0.047	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.AN.A0FJ.01A	DYM::MYO5B	0.078	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.A8.A06R.01A	DYNC1H1::PPP2R5C	0.015	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.OL.A5D8.01A	DYNC1I2::BRE	2.1	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.B6.A0I8.01A	DYNC2H1::KCNQ5	0.27	tier4	Out-of-frame	A0 : B1	A0 : B0	NA
BRCA	TCGA.A2.A1FW.01A	DYNLL2::SEPT4	0.1	tier1	5UTR-CDS	A0 : B0	A0 : B0	NA
BRCA	TCGA.A2.A0CW.01A	DYRK1A::BRWD1	0.24	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.E2.A15A.01A	DYRK1A::KDM4B	4.5	tier3	5UTR-CDS	A0 : B1	A0 : B0	NA
BRCA	TCGA.BH.A1FD.01A	DYRK1A::MRPS6	2.7	tier1	Out-of-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.C8.A130.01A	DYRK1A::ZBTB46	1.2	tier1	CDS-5UTR	A1 : B0	A0 : B0	validated
BRCA	TCGA.E9.A1NA.01A	DYX1C1::RFX7	0.14	tier4	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.B6.A400.01A	DZIP1::PCCA	0.63	tier3	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.LL.A740.01A	E2F3::FBXO9	0.063	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.A8.A09A.01A	E2F6::LYRM4	2.1	tier4	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.AO.A03L.01A	EAF2::RGS9	0.31	tier1	Out-of-frame	A1 : B0	A0 : B0	non-validated
BRCA	TCGA.E2.A1LA.01A	ECD::CXCL12	0.11	tier1	Out-of-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.B6.A0IM.01A	EDC3::SNX29	0.29	tier1	5UTR-CDS	A0 : B1	A0 : B0	NA
BRCA	TCGA.BH.A0H7.01A	EDEM2::DOK5	2.0	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.BH.A0B7.01A	EEA1::PAH	1.5	tier1	In-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.AC.A5EH.01A	EEA1::TMCC3	0.049	tier1	In-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.D8.A1XD.01A	EEF1A2::DKKL1	0.23	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.A8.A0AD.01A	EEF1E1::EYS	1.4	tier2	NA	A0 : B0	A0 : B0	NA
BRCA	TCGA.BH.A0B9.01A	EEF2K::UQCRC2	0.14	tier1	Out-of-frame	A0 : B0	A0 : B0	non-validated
BRCA	TCGA.C8.A12Q.01A	EEF2K::VWA3A	0.25	tier3	CDS-5UTR	A0 : B0	A0 : B0	validated
BRCA	TCGA.OL.A66P.01A	EEF2K::VWA3A	0.25	tier3	CDS-3UTR	A1 : B0	A1 : B0	NA
BRCA	TCGA.A8.A08I.01A	EFCAB11::ASB2	0.31	tier1	In-frame	A0 : B0	A0 : B1	NA
BRCA	TCGA.E9.A22D.01A	EFHA1::ATP8A2	0.65	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.AR.A0TZ.01A	EFHB::PLCL2	0.42	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.BH.A0HY.01A	EFHC1::LPHN3	0.38	tier1	CDS-5UTR	A0 : B0	A0 : B0	NA
BRCA	TCGA.AO.A0JE.01A	EFHD1::EIF4E2	0.99	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.C8.A12Q.01A	EFHD1::EIF4E2	0.99	tier1	In-frame	A0 : B0	A0 : B0	non-validated
BRCA	TCGA.AR.A0TT.01A	EFNA3::USP21	0.52	tier1	CDS-5UTR	A0 : B0	A0 : B0	NA
BRCA	TCGA.E2.A109.01A	EFNA4::C20orf96	0.24	tier1	In-frame	A0 : B0	A0 : B0	non-validated
BRCA	TCGA.E2.A1LE.01A	EFNA4::FLAD1	0.41	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.BH.A0AV.01A	EFR3A::ASAP1	0.096	tier3	In-frame	A0 : B0	A0 : B0	non-validated
BRCA	TCGA.AR.A0TT.01A	EGLN1::PGBD5	0.25	tier1	CDS-5UTR	A0 : B0	A0 : B0	NA
BRCA	TCGA.D8.A147.01A	EHBP1::BCL11A	1.1	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.AR.A1AO.01A	EHBP1::COMMD1	2.0	tier1	In-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.A8.A07C.01A	EHBP1::FAM59B	0.95	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.A1.A0SB.01A	EHD4::FSIP1	4.9	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.D8.A27N.01A	EHHADH::ABCC5	0.81	tier3	In-frame	A0 : B1	A0 : B0	NA
BRCA	TCGA.PL.A8LZ.01A	EHMT1::ARRDC1	0.082	tier3	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.A7.A6VY.01A	EHMT1::GRIN1	0.27	tier1	In-frame	A1 : B0	A1 : B0	NA
BRCA	TCGA.D8.A1X5.01A	EIF1::MED28	100.0	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.A2.A04P.01A	EIF2AK2::CEBPZ	0.36	tier1	Out-of-frame	A0 : B0	A0 : B0	non-validated
BRCA	TCGA.D8.A142.01A	EIF2AK2::FAM82A1	0.23	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.AR.A24L.01A	EIF2B3::HYI	100.0	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.AC.A6IW.01A	EIF2C2::PCMTD1	0.54	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.C8.A26Y.01A	EIF2C2::PTK2	7.7	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.E2.A1II.01A	EIF2C2::PTK2	7.7	tier4	Out-of-frame	A0 : B1	A0 : B0	NA
BRCA	TCGA.E2.A1LE.01A	EIF2C2::PTK2	7.7	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.GM.A2DB.01A	EIF2S1::GPHN	2.4	tier1	In-frame	A0 : B1	A0 : B0	NA
BRCA	TCGA.C8.A273.01A	EIF2S2::DEFB123	0.52	tier1	Out-of-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.E2.A1AZ.01A	EIF4E2::DIS3L2	1.5	tier2	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.BH.A0H7.01A	EIF4ENIF1::SHANK3	0.27	tier1	In-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.E2.A158.01A	EIF4G3::PPP2R3A	0.43	tier1	5UTR-CDS	A0 : B0	A0 : B0	NA
BRCA	TCGA.AN.A0FJ.01A	EIF4G3::RAP1GAP	0.063	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.A2.A0D4.01A	ELAVL1::AC011498.1	0.012	tier1	Out-of-frame	A0 : B0	A1 : B0	non-validated
BRCA	TCGA.B6.A0I1.01A	ELF5::CAT	0.057	tier1	In-frame	A0 : B0	A0 : B0	non-validated
BRCA	TCGA.AR.A251.01A	ELK3::AMDHD1	0.091	tier1	Out-of-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.A2.A04U.01A	ELL::C19orf42	4.8	tier1	Out-of-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.AC.A7VB.01A	ELL::INSR	0.37	tier1	Out-of-frame	A1 : B1	A0 : B0	NA
BRCA	TCGA.AR.A1AN.01A	ELMO2::STAP1	2.4	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.A2.A4S3.01A	ELMOD3::TCF7L1	0.28	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.AN.A0XU.01A	ELMOD3::TTC27	0.27	tier4	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.D8.A1XQ.01A	ELN::FADS2	0.011	tier3	3UTR-CDS	A0 : B0	A0 : B1	NA
BRCA	TCGA.AO.A0J3.01A	ELN::METTL2B	2.7	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.AR.A2LE.01A	ELOVL5::FAR1	2.2	tier4	NA	A0 : B0	A0 : B0	NA
BRCA	TCGA.AR.A1AI.01A	ELP2::GALNT1	0.8	tier1	CDS-5UTR	A0 : B0	A0 : B0	NA
BRCA	TCGA.A2.A0D2.01A	ELP2::MAPRE2	0.37	tier1	In-frame	A0 : B0	A0 : B0	validated
BRCA	TCGA.AC.A2QH.01A	ELP4::CFTR	0.43	tier1	In-frame	A0 : B1	A0 : B0	NA
BRCA	TCGA.B6.A0I1.01A	EML1::CCNK	2.0	tier1	CDS-5UTR	A0 : B0	A0 : B0	non-validated
BRCA	TCGA.E9.A245.01A	EML4::COX7A2L	0.6	tier1	Out-of-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.GI.A2C9.01A	EMP1::ETV6	0.75	tier1	5UTR-CDS	A0 : B0	A0 : B0	non-validated
BRCA	TCGA.A2.A0T1.01A	ENDOV::IKZF3	0.97	tier2	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.C8.A135.01A	ENDOV::SLC26A11	0.29	tier1	Out-of-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.B6.A0I6.01A	ENG::AK1	0.86	tier4	In-frame	A0 : B0	A0 : B0	non-validated
BRCA	TCGA.A8.A08G.01A	ENOX2::OSBPL5	7.1	tier1	CDS-5UTR	A0 : B0	A0 : B0	NA
BRCA	TCGA.OL.A6VO.01A	ENPP1::RIPPLY2	2.1	tier2	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.GI.A2C9.01A	EP300::IPO5	0.17	tier1	Out-of-frame	A1 : B1	A0 : B0	non-validated
BRCA	TCGA.A2.A0D0.01A	EP400::SFSWAP	0.2	tier1	Out-of-frame	A1 : B0	A1 : B0	validated
BRCA	TCGA.E2.A10C.01A	EPB41L1::BCL2A1	3.7	tier4	5UTR-CDS	A0 : B0	A0 : B0	NA
BRCA	TCGA.A8.A079.01A	EPB41L1::GHRH	0.004	tier1	5UTR-5UTR	A0 : B0	A0 : B0	NA
BRCA	TCGA.BH.A0HB.01A	EPB41L3::LAMA1	0.13	tier1	In-frame	A0 : B1	A0 : B0	NA
BRCA	TCGA.BH.A0B9.01A	EPB41L4B::PTPN3	0.15	tier1	Out-of-frame	A1 : B0	A0 : B0	validated
BRCA	TCGA.BH.A0C7.01B	EPC1::PTGR2	1.9	tier1	In-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.A8.A08F.01A	EPC2::MBD5	0.026	tier2	CDS-5UTR	A0 : B0	A0 : B0	NA
BRCA	TCGA.A2.A04P.01A	EPC2::THSD7B	2.8	tier2	In-frame	A1 : B1	A0 : B0	validated
BRCA	TCGA.LL.A7SZ.01A	EPHA6::C11orf80	4.0	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.BH.A0HW.01A	EPHA6::RG9MTD1	0.89	tier2	CDS-5UTR	A0 : B0	A0 : B0	NA
BRCA	TCGA.E9.A1NA.01A	EPHX2::BNIP3L	1.4	tier2	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.A7.A2KD.01A	EPN2::AKAP10	0.67	tier2	5UTR-CDS	A0 : B1	A0 : B0	NA
BRCA	TCGA.A7.A26I.01B	EPRS::DNAH14	0.017	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.AC.A2FM.01A	EPS15L1::BRD4	0.16	tier1	CDS-5UTR	A1 : B0	A1 : B0	NA
BRCA	TCGA.A7.A13D.01A	EPS15L1::CALR3	3.4	tier1	CDS-5UTR	A1 : B0	A0 : B0	non-validated
BRCA	TCGA.B6.A3ZX.01A	EPS15L1::CALR3	3.4	tier1	CDS-5UTR	A0 : B0	A0 : B0	NA
BRCA	TCGA.C8.A12Q.01A	EPS15L1::CLNS1A	0.008	tier1	Out-of-frame	A1 : B0	A0 : B0	non-validated
BRCA	TCGA.A1.A0SJ.01A	ERAL1::DIDO1	2.0	tier4	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.BH.A204.01A	ERBB2::CDK12	0.41	tier1	In-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.UU.A93S.01A	ERBB2::CLDN7	1.2	tier3	3UTR-5UTR	A0 : B0	A0 : B0	NA
BRCA	TCGA.AR.A254.01A	ERBB2::SLC29A3	0.032	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.A2.A0YE.01A	ERBB2::SLC39A11	0.48	tier1	CDS-5UTR	A0 : B0	A0 : B0	NA
BRCA	TCGA.GM.A2DD.01A	ERBB2IP::C5orf44	0.99	tier4	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.PE.A5DC.01A	ERBB2IP::NLN	0.018	tier1	5UTR-CDS	A0 : B0	A0 : B0	NA
BRCA	TCGA.BH.A1FD.01A	ERBB2IP::PPWD1	2.3	tier1	5UTR-CDS	A0 : B0	A0 : B0	NA
BRCA	TCGA.A2.A1FW.01A	ERBB2IP::ZBTB10	0.26	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.B6.A0IG.01A	ERC1::PIK3C2G	5.7	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.C8.A1HJ.01A	ERC1::RET	0.55	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.E2.A9RU.01A	ERC1::TACC3	0.022	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.C8.A12P.01A	ERC1::TOMM34	0.2	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.A1.A0SO.01A	ERC2::ARHGEF3	0.072	tier1	In-frame	A0 : B1	A0 : B0	NA
BRCA	TCGA.E2.A14T.01A	ERICH1::PCM1	1.0	tier1	Out-of-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.D8.A27H.01A	ESCO1::ABHD3	1.2	tier1	Out-of-frame	A0 : B0	A0 : B0	validated
BRCA	TCGA.AN.A0AR.01A	ESCO1::KANK1	1.2	tier1	5UTR-CDS	A0 : B0	A0 : B0	NA
BRCA	TCGA.A2.A3KD.01A	ESR1::ASPH	0.029	tier2	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.BH.A1EV.01A	ESR1::BNC2	1.4	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.E9.A1NA.01A	ESR1::C6orf211	0.17	tier1	5UTR-CDS	A0 : B0	A0 : B0	NA
BRCA	TCGA.A2.A0CT.01A	ESR1::C6orf97	0.35	tier1	5UTR-CDS	A0 : B0	A0 : B0	NA
BRCA	TCGA.A2.A0YG.01A	ESR1::C6orf97	0.35	tier1	5UTR-CDS	A0 : B0	A0 : B0	non-validated
BRCA	TCGA.A2.A25B.01A	ESR1::C6orf97	0.35	tier4	5UTR-CDS	A0 : B0	A0 : B0	validated
BRCA	TCGA.A2.A4S3.01A	ESR1::C6orf97	0.35	tier1	5UTR-CDS	A0 : B0	A0 : B0	NA
BRCA	TCGA.A7.A4SC.01A	ESR1::C6orf97	0.35	tier1	5UTR-CDS	A0 : B0	A0 : B0	NA
BRCA	TCGA.AC.A8OS.01A	ESR1::C6orf97	0.35	tier1	5UTR-CDS	A0 : B0	A0 : B0	NA
BRCA	TCGA.AR.A24R.01A	ESR1::C6orf97	0.35	tier1	Out-of-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.BH.A0B1.01A	ESR1::C6orf97	0.35	tier1	5UTR-CDS	A0 : B0	A0 : B0	NA
BRCA	TCGA.BH.A0C0.01A	ESR1::C6orf97	0.35	tier2	5UTR-CDS	A0 : B0	A0 : B0	NA
BRCA	TCGA.BH.A0HY.01A	ESR1::C6orf97	0.35	tier1	5UTR-CDS	A0 : B0	A0 : B0	NA
BRCA	TCGA.BH.A18R.01A	ESR1::C6orf97	0.35	tier1	5UTR-CDS	A0 : B0	A0 : B0	validated
BRCA	TCGA.D8.A1JP.01A	ESR1::C6orf97	0.35	tier1	5UTR-CDS	A0 : B0	A0 : B0	NA
BRCA	TCGA.D8.A1XA.01A	ESR1::C6orf97	0.35	tier2	5UTR-CDS	A0 : B0	A0 : B0	NA
BRCA	TCGA.D8.A27N.01A	ESR1::C6orf97	0.35	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.BH.A5J0.01A	ESR1::MTHFD1L	0.83	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.A8.A06Q.01A	ESR1::USP25	1.2	tier1	Out-of-frame	A0 : B1	A0 : B1	NA
BRCA	TCGA.A2.A0EY.01A	ESRP2::SLC7A6	0.13	tier1	In-frame	A0 : B0	A0 : B0	non-validated
BRCA	TCGA.B6.A0IQ.01A	ESRRG::ACBD3	2.5	tier3	In-frame	A0 : B1	A0 : B0	non-validated
BRCA	TCGA.C8.A12L.01A	ESRRG::ADCY10	1.0	tier1	5UTR-CDS	A0 : B0	A0 : B0	non-validated
BRCA	TCGA.AQ.A04L.01B	ESYT2::C7orf58	0.33	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.E9.A5UO.01A	ETFA::STRA6	0.14	tier1	CDS-5UTR	A0 : B0	A0 : B0	NA
BRCA	TCGA.B6.A0RT.01A	ETFB::LIM2	0.55	tier1	Out-of-frame	A0 : B0	A0 : B0	non-validated
BRCA	TCGA.OL.A5RZ.01A	ETNK1::RCAN2	3.3	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.A2.A0T3.01A	ETV4::CCL16	0.13	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.AO.A03U.01B	ETV6::NTRK3	5.5	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.EW.A1PB.01A	ETV6::YTHDF2	0.8	tier1	Out-of-frame	A1 : B0	A0 : B0	validated
BRCA	TCGA.E9.A1R6.01A	EVC::WDR60	0.95	tier3	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.AQ.A54N.01A	EVI5L::VAV1	0.032	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.A2.A4S3.01A	EVL::EML1	0.6	tier1	In-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.E2.A109.01A	EVPL::MAP2K6	0.12	tier1	Out-of-frame	A1 : B0	A0 : B0	validated
BRCA	TCGA.C8.A12U.01A	EXOC2::SH3RF3	1.7	tier1	5UTR-CDS	A0 : B1	A0 : B0	NA
BRCA	TCGA.AR.A256.01A	EXOC4::SLC25A13	1.7	tier1	In-frame	A0 : B0	A0 : B0	non-validated
BRCA	TCGA.A7.A13D.01A	EXOC6B::SFXN5	0.87	tier1	In-frame	A0 : B0	A0 : B0	non-validated
BRCA	TCGA.C8.A26Y.01A	EXOC6B::SFXN5	0.87	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.EW.A2FS.01A	EXOC7::USP22	0.25	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.BH.A1EN.01A	EXT1::RSF1	0.28	tier1	In-frame	A0 : B1	A0 : B1	NA
BRCA	TCGA.A7.A6VY.01A	EXT1::SAMD12	0.75	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.B6.A0X7.01A	EXT2::ALX4	2.5	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.A7.A13E.01A	EXTL3::TMEM66	0.5	tier1	5UTR-CDS	A0 : B0	A0 : B0	NA
BRCA	TCGA.BH.A18V.01A	EYA3::KIAA0247	0.002	tier1	CDS-5UTR	A0 : B0	A0 : B0	NA
BRCA	TCGA.BH.A18V.06A	EYA3::KIAA0247	0.002	tier1	CDS-5UTR	A0 : B0	A0 : B0	NA
BRCA	TCGA.A2.A04P.01A	EYA3::POP4	0.046	tier2	In-frame	A0 : B0	A0 : B0	non-validated
BRCA	TCGA.B6.A0IG.01A	EZH1::TOP2A	0.079	tier2	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.A2.A0CY.01A	EZR::RB1CC1	0.73	tier1	Out-of-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.E9.A1R7.01A	FAF1::HCRTR1	1.1	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.EW.A3U0.01A	FAF1::HOOK1	0.26	tier1	In-frame	A0 : B0	A0 : B0	non-validated
BRCA	TCGA.BH.A209.01A	FAF1::LRRC7	1.0	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.BH.A1FC.01A	FAF1::NFIA	0.42	tier4	Out-of-frame	A0 : B0	A0 : B0	non-validated
BRCA	TCGA.BH.A0DX.01A	FAF1::PTRH2	0.32	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.A8.A09A.01A	FAM102A::NAIF1	0.5	tier3	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.OL.A66P.01A	FAM111B::GLYATL1	0.89	tier1	Out-of-frame	A1 : B0	A1 : B0	NA
BRCA	TCGA.B6.A0IG.01A	FAM111B::MS4A5	1.1	tier2	In-frame	A1 : B0	A1 : B0	NA
BRCA	TCGA.AO.A129.01A	FAM114A1::IQCE	3.5	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.BH.A1F0.01A	FAM117B::ATIC	0.011	tier1	In-frame	A0 : B1	A0 : B0	NA
BRCA	TCGA.AR.A24W.01A	FAM122B::GPC4	0.062	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.A8.A08X.01A	FAM129B::OLFM1	0.36	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.A2.A04T.01A	FAM129B::PYROXD1	1.8	tier2	Out-of-frame	A0 : B0	A0 : B0	non-validated
BRCA	TCGA.A8.A08X.01A	FAM129B::SEC16A	0.1	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.AO.A0JM.01A	FAM131A::NAA50	1.6	tier1	CDS-5UTR	A0 : B0	A0 : B0	validated
BRCA	TCGA.AO.A03P.01A	FAM149B1::KCNMA1	1.3	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.E9.A1R7.01A	FAM157A::C9	100.0	tier3	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.AN.A0XN.01A	FAM160A1::DDX60	3.5	tier1	5UTR-CDS	A0 : B0	A0 : B0	NA
BRCA	TCGA.AN.A04C.01A	FAM160A1::IL15	0.081	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.A8.A08I.01A	FAM168A::DNAJB13	0.49	tier1	5UTR-CDS	A0 : B0	A0 : B0	NA
BRCA	TCGA.AR.A24Z.01A	FAM168A::PTCRA	0.08	tier1	5UTR-CDS	A0 : B0	A0 : B0	non-validated
BRCA	TCGA.A2.A0CY.01A	FAM168A::RAB6A	0.019	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.AC.A3QQ.01A	FAM168A::SLC13A2	0.7	tier2	5UTR-CDS	A0 : B0	A0 : B0	NA
BRCA	TCGA.E2.A15A.01A	FAM168A::UVRAG	1.1	tier1	5UTR-CDS	A0 : B1	A0 : B0	NA
BRCA	TCGA.D8.A1XZ.01A	FAM172A::EFNA5	0.82	tier1	5UTR-CDS	A0 : B0	A0 : B0	NA
BRCA	TCGA.A7.A26F.01A	FAM172A::KIAA0825	0.79	tier1	CDS-5UTR	A0 : B0	A0 : B0	NA
BRCA	TCGA.E9.A1NA.01A	FAM172A::KIAA0825	0.79	tier3	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.C8.A132.01A	FAM177A1::IQSEC3	0.24	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.A7.A26G.01A	FAM190A::MMRN1	1.1	tier4	Out-of-frame	A0 : B1	A0 : B0	non-validated
BRCA	TCGA.A8.A07O.01A	FAM190A::MMRN1	1.1	tier1	5UTR-CDS	A0 : B0	A0 : B0	NA
BRCA	TCGA.BH.A0RX.01A	FAM192A::C16orf62	0.1	tier1	5UTR-CDS	A0 : B0	A0 : B0	NA
BRCA	TCGA.C8.A12U.01A	FAM19A2::KCNMB4	2.4	tier1	5UTR-CDS	A0 : B0	A0 : B0	NA
BRCA	TCGA.E2.A9RU.01A	FAM19A2::OOEP	0.51	tier1	5UTR-CDS	A0 : B0	A0 : B0	NA
BRCA	TCGA.A2.A0CX.01A	FAM19A4::CACNA2D3	0.3	tier1	5UTR-CDS	A0 : B0	A0 : B0	NA
BRCA	TCGA.BH.A0BF.01A	FAM36A::SDCCAG8	0.24	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.A8.A09M.01A	FAM38A::APRT	0.018	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.A8.A06Z.01A	FAM49B::ASAP1	0.47	tier1	5UTR-CDS	A0 : B0	A0 : B0	NA
BRCA	TCGA.AO.A0J5.01A	FAM49B::KAT6A	0.73	tier1	Out-of-frame	A0 : B0	A1 : B0	NA
BRCA	TCGA.E2.A1IN.01A	FAM53B::SGK2	1.5	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.A7.A4SE.01A	FAM59A::GTF2H1	0.21	tier2	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.EW.A2FW.01A	FAM69A::NTNG1	5.2	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.A8.A07L.01A	FAM73B::NUP188	0.22	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.E9.A22A.01A	FAM82B::AKAP6	0.95	tier1	CDS-3UTR	A0 : B0	A0 : B0	NA
BRCA	TCGA.AR.A0TY.01A	FAM82B::ESRP1	0.41	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.AN.A0FJ.01A	FAM83D::SF3B3	0.014	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.BH.A0H7.01A	FAM83D::SPECC1L	2.0	tier1	In-frame	A0 : B1	A0 : B0	NA
BRCA	TCGA.D8.A1JA.01A	FAM83G::TTC19	0.19	tier3	Out-of-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.AN.A0AM.01A	FAM96A::SNX1	1.1	tier1	Out-of-frame	A0 : B1	A0 : B0	NA
BRCA	TCGA.OL.A5RW.01A	FAM98B::RASGRP1	0.79	tier2	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.D8.A1JM.01A	FANCD2::MTMR14	1.6	tier1	In-frame	A1 : B0	A1 : B0	NA
BRCA	TCGA.E2.A154.01A	FARP1::SIAE	1.0	tier3	3UTR-5UTR	A0 : B0	A0 : B0	NA
BRCA	TCGA.E9.A1NA.01A	FARS2::RREB1	2.0	tier1	Out-of-frame	A0 : B1	A0 : B0	NA
BRCA	TCGA.E9.A247.01A	FAS::CTNND2	0.006	tier2	In-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.A2.A0T1.01A	FBXL20::ABCA6	2.0	tier2	In-frame	A0 : B1	A0 : B0	NA
BRCA	TCGA.A7.A13D.01A	FBXL20::C17orf37	0.37	tier1	Out-of-frame	A0 : B0	A0 : B0	non-validated
BRCA	TCGA.3C.AALI.01A	FBXL20::CEP95	1.0	tier1	In-frame	A0 : B1	A0 : B0	NA
BRCA	TCGA.A1.A0SM.01A	FBXL20::GDPD5	1.5	tier1	In-frame	A0 : B0	A0 : B0	non-validated
BRCA	TCGA.AC.A2FF.01A	FBXL20::LRSAM1	0.36	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.A2.A1G1.01A	FBXL20::MSL1	0.037	tier2	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.E2.A15M.01A	FBXL20::MSL1	0.037	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.A8.A08S.01A	FBXL20::MYO1D	0.16	tier1	Out-of-frame	A0 : B1	A0 : B0	non-validated
BRCA	TCGA.AR.A254.01A	FBXL20::NOTCH2	0.35	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.3C.AALI.01A	FBXL20::PITPNC1	0.78	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.OL.A5RZ.01A	FBXL20::PPM1E	0.69	tier1	In-frame	A0 : B1	A0 : B0	NA
BRCA	TCGA.A2.A0EY.01A	FBXL20::SIRT6	0.17	tier2	Out-of-frame	A0 : B0	A0 : B0	non-validated
BRCA	TCGA.AR.A254.01A	FBXL20::SOCS7	0.79	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.A8.A076.01A	FBXL20::TANC2	0.008	tier2	CDS-5UTR	A0 : B0	A0 : B0	NA
BRCA	TCGA.E2.A2P6.01A	FBXL3::KLF5	0.13	tier1	5UTR-CDS	A0 : B0	A0 : B0	NA
BRCA	TCGA.A2.A0EX.01A	FBXO16::ADAM32	1.5	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.A7.A0CG.01A	FBXO22::SNX33	0.99	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.BH.A0BZ.01A	FBXO38::SPINK6	100.0	tier1	NA	A0 : B0	A0 : B0	NA
BRCA	TCGA.AC.A2FO.01A	FBXO42::RUNX1	0.003	tier1	5UTR-CDS	A0 : B0	A0 : B0	NA
BRCA	TCGA.BH.A0H7.01A	FBXO46::SYMPK	0.13	tier1	5UTR-CDS	A0 : B0	A0 : B0	NA
BRCA	TCGA.C8.A8HR.01A	FBXW2::LTBP2	0.048	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.B6.A0I6.01A	FBXW4::MGEA5	0.45	tier4	Out-of-frame	A0 : B0	A0 : B0	non-validated
BRCA	TCGA.D8.A1JG.01B	FBXW7::TMEM154	0.003	tier1	5UTR-CDS	A0 : B0	A0 : B0	NA
BRCA	TCGA.B6.A0RH.01A	FBXW8::CHST11	0.95	tier2	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.BH.A1EV.01A	FCGR2A::SPTA1	2.5	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.GM.A2DF.01A	FCHSD2::C11orf83	1.3	tier1	CDS-5UTR	A0 : B0	A0 : B0	non-validated
BRCA	TCGA.BH.A18I.01A	FCHSD2::CPT1A	2.9	tier1	5UTR-CDS	A0 : B0	A0 : B1	NA
BRCA	TCGA.A8.A093.01A	FCHSD2::DTX4	0.074	tier2	Out-of-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.D8.A140.01A	FCHSD2::FAM168A	0.096	tier1	CDS-5UTR	A0 : B0	A0 : B0	NA
BRCA	TCGA.A8.A07E.01A	FCHSD2::PLEKHB1	0.11	tier3	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.C8.A1HO.01A	FCHSD2::RALYL	1.5	tier3	In-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.BH.A201.01A	FCHSD2::RNF169	0.36	tier1	Out-of-frame	A0 : B1	A0 : B0	NA
BRCA	TCGA.B6.A0RL.01A	FCHSD2::SHANK2	0.41	tier1	Out-of-frame	A0 : B1	A0 : B0	NA
BRCA	TCGA.EW.A6SC.01A	FCHSD2::SHANK2	0.41	tier1	Out-of-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.E2.A15K.01A	FDFT1::INTS9	2.6	tier1	Out-of-frame	A1 : B0	A1 : B0	validated
BRCA	TCGA.E2.A15K.06A	FDFT1::INTS9	2.6	tier1	Out-of-frame	A1 : B0	A1 : B0	validated
BRCA	TCGA.AO.A0J2.01A	FDFT1::NEIL2	0.72	tier1	Out-of-frame	A1 : B0	A1 : B0	validated
BRCA	TCGA.E2.A109.01A	FERMT1::FAM18B2	0.064	tier1	Out-of-frame	A1 : B0	A0 : B0	non-validated
BRCA	TCGA.A2.A0CM.01A	FERMT1::MCM8	0.056	tier2	In-frame	A0 : B1	A0 : B0	non-validated
BRCA	TCGA.BH.A203.01A	FERMT1::RBBP8	0.6	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.E2.A1LL.01A	FGD4::ABCC9	0.005	tier1	5UTR-CDS	A0 : B0	A0 : B0	non-validated
BRCA	TCGA.E9.A5UO.01A	FGD6::NUP37	1.5	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.AR.A0TP.01A	FGF12::SYN3	0.097	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.A2.A04U.01A	FGF13::NLRP3	1.4	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.E2.A574.01A	FGFR1::ADAM18	1.8	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.A8.A06R.01A	FGFR1OP::MCM9	0.2	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.D8.A13Z.01A	FGFR2::CCDC6	0.28	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.LD.A7W5.01A	FGFR2::ENPP2	0.15	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.D8.A4Z1.01A	FGGY::CDH17	0.27	tier3	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.OL.A5RZ.01A	FGGY::RPS6KA1	0.81	tier2	Out-of-frame	A0 : B1	A0 : B0	NA
BRCA	TCGA.AO.A124.01A	FIG4::WASF1	1.2	tier4	Out-of-frame	A0 : B0	A0 : B0	non-validated
BRCA	TCGA.BH.A203.01A	FIG4::WASF1	1.2	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.OL.A5D7.01A	FIP1L1::SBNO2	0.13	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.D8.A1Y0.01A	FLNA::TKTL1	2.9	tier1	5UTR-CDS	A0 : B0	A0 : B0	NA
BRCA	TCGA.A2.A0SX.01A	FLNB::SLMAP	0.66	tier1	In-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.A8.A07C.01A	FLNB::SLMAP	0.66	tier1	In-frame	A1 : B0	A1 : B0	NA
BRCA	TCGA.A2.A25B.01A	FLOT2::PEX12	0.87	tier4	Out-of-frame	A1 : B0	A1 : B0	non-validated
BRCA	TCGA.A8.A097.01A	FN1::EIF2AK2	0.92	tier4	NA	A0 : B0	A0 : B0	NA
BRCA	TCGA.C8.A12K.01A	FNDC3A::RB1	1.1	tier2	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.AO.A03P.01A	FNDC3B::NLGN1	0.016	tier1	Out-of-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.AC.A6IW.01A	FNDC3B::UCK2	1.3	tier1	5UTR-CDS	A0 : B0	A0 : B0	NA
BRCA	TCGA.AO.A1KR.01A	FNIP2::LARP7	0.57	tier4	In-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.BH.A0H7.01A	FNIP2::LRBA	0.73	tier1	Out-of-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.A7.A3IZ.01A	FNTA::OVOL1	0.69	tier1	Out-of-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.A2.A0EW.01A	FNTA::ZMAT4	2.0	tier1	CDS-5UTR	A0 : B0	A0 : B0	NA
BRCA	TCGA.BH.A1FD.01A	FOSL2::BRE	0.036	tier3	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.E2.A1LS.01A	FOXJ3::ELAVL4	0.76	tier3	Out-of-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.AR.A24Z.01A	FOXJ3::ZFYVE9	0.94	tier1	CDS-5UTR	A0 : B0	A0 : B0	non-validated
BRCA	TCGA.E9.A1R7.01A	FOXJ3::ZNF362	0.17	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.S3.AA10.01A	FOXK1::ZNF671	3.4	tier2	Out-of-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.D8.A27N.01A	FOXK2::ABCA5	0.041	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.B6.A3ZX.01A	FOXK2::MADCAM1	0.29	tier1	Out-of-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.C8.A1HO.01A	FOXK2::PITPNC1	0.39	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.AO.A0JG.01A	FOXK2::SKAP1	1.0	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.A8.A08O.01A	FOXK2::TIAF1	0.5	tier1	CDS-5UTR	A0 : B0	A0 : B0	NA
BRCA	TCGA.AR.A1AU.01A	FOXO3::CHD7	0.018	tier2	CDS-5UTR	A0 : B0	A0 : B0	NA
BRCA	TCGA.HN.A2NL.01A	FOXP1::ARMC8	0.35	tier2	In-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.BH.A1FE.01A	FOXP1::C5orf51	1.3	tier1	5UTR-CDS	A0 : B0	A0 : B0	NA
BRCA	TCGA.A7.A3J0.01A	FOXP1::EIF4E3	0.45	tier4	5UTR-CDS	A0 : B0	A0 : B0	NA
BRCA	TCGA.BH.A18V.01A	FOXP1::EIF4E3	0.45	tier1	5UTR-5UTR	A0 : B0	A0 : B0	NA
BRCA	TCGA.BH.A18V.06A	FOXP1::EIF4E3	0.45	tier1	5UTR-5UTR	A0 : B0	A0 : B0	NA
BRCA	TCGA.E9.A1RB.01A	FOXP1::EIF4E3	0.45	tier1	5UTR-CDS	A0 : B0	A0 : B0	NA
BRCA	TCGA.BH.A0BR.01A	FOXP1::RGAG4	1.1	tier1	5UTR-3UTR	A0 : B0	A0 : B0	NA
BRCA	TCGA.E2.A14Q.01A	FRAS1::DCK	1.2	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.D8.A1JA.01A	FRAS1::FAM190A	0.018	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.AQ.A1H2.01A	FRK::DTNBP1	2.4	tier1	Out-of-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.AN.A0AT.01A	FRMD5::EIF2C3	2.3	tier1	Out-of-frame	A1 : B0	A0 : B0	non-validated
BRCA	TCGA.B6.A0I1.01A	FRMD8::MAST1	0.19	tier1	Out-of-frame	A0 : B1	A0 : B0	non-validated
BRCA	TCGA.A8.A06Z.01A	FRS2::LYZ	1.3	tier1	5UTR-CDS	A0 : B0	A0 : B0	NA
BRCA	TCGA.A8.A07O.01A	FRS2::LYZ	1.3	tier1	5UTR-CDS	A0 : B0	A0 : B0	NA
BRCA	TCGA.AN.A0AM.01A	FRS2::NRG3	0.22	tier1	5UTR-CDS	A0 : B1	A0 : B0	NA
BRCA	TCGA.BH.A1EV.01A	FRS2::OSBPL8	0.15	tier1	5UTR-CDS	A0 : B0	A0 : B0	NA
BRCA	TCGA.C8.A12M.01A	FRS2::TSPAN8	0.11	tier1	5UTR-5UTR	A0 : B0	A0 : B0	NA
BRCA	TCGA.OL.A5D7.01A	FRYL::DTD1	2.0	tier1	In-frame	A1 : B0	A1 : B0	NA
BRCA	TCGA.BH.A0HU.01A	FRYL::ZNF606	0.15	tier1	5UTR-CDS	A0 : B0	A0 : B0	NA
BRCA	TCGA.B6.A0I9.01A	FSD1L::ADAMTS13	4.7	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.AR.A24V.01A	FSTL4::SLIT3	0.54	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.AR.A0U4.01A	FTSJ3::SCN4A	0.007	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.LL.A73Y.01A	FUBP1::LRRC7	0.048	tier1	CDS-5UTR	A1 : B0	A0 : B0	NA
BRCA	TCGA.AR.A1AR.01A	FUBP1::SLC44A5	1.4	tier1	Out-of-frame	A1 : B1	A1 : B0	NA
BRCA	TCGA.D8.A1XU.01A	FUS::CHD1	0.035	tier4	NA	A0 : B0	A0 : B0	NA
BRCA	TCGA.AR.A250.01A	FUT10::GAB2	0.068	tier1	In-frame	A0 : B1	A0 : B0	NA
BRCA	TCGA.C8.A26Z.01A	FUT8::AGBL4	0.73	tier1	5UTR-CDS	A0 : B0	A0 : B0	NA
BRCA	TCGA.AO.A0J5.01A	FUT8::FNTB	0.47	tier1	5UTR-CDS	A0 : B1	A0 : B0	NA
BRCA	TCGA.C8.A135.01A	FXR1::RIMS2	0.93	tier3	Out-of-frame	A1 : B0	A1 : B0	NA
BRCA	TCGA.BH.A0W3.01A	FZD4::LAMTOR1	0.35	tier2	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.AC.A5XU.01A	FZR1::NFIC	0.088	tier2	5UTR-CDS	A0 : B0	A0 : B0	NA
BRCA	TCGA.JL.A3YW.01A	FZR1::NFIC	0.088	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.AC.A2BM.01A	G3BP1::GLRA1	2.3	tier3	5UTR-CDS	A0 : B0	A0 : B0	NA
BRCA	TCGA.3C.AAAU.01A	G3BP2::PTPN1	0.61	tier1	5UTR-CDS	A0 : B1	A0 : B0	NA
BRCA	TCGA.BH.A0B5.01A	G6PD::F8	0.85	tier1	In-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.3C.AAAU.01A	GAB2::CHKA	0.045	tier1	NA	A0 : B0	A0 : B0	NA
BRCA	TCGA.A1.A0SM.01A	GAB2::MYO7A	0.13	tier2	In-frame	A1 : B0	A0 : B0	non-validated
BRCA	TCGA.BH.A0HY.01A	GAB2::ODZ4	0.25	tier1	CDS-5UTR	A1 : B0	A0 : B0	NA
BRCA	TCGA.A1.A0SM.01A	GAB2::PLXDC1	0.39	tier2	Out-of-frame	A1 : B0	A0 : B0	non-validated
BRCA	TCGA.A2.A0CL.01A	GAB2::THRSP	0.88	tier1	CDS-3UTR	A1 : B0	A0 : B0	NA
BRCA	TCGA.C8.A12T.01A	GABPB1::GALK2	1.2	tier1	5UTR-CDS	A0 : B0	A0 : B0	NA
BRCA	TCGA.E9.A22G.01A	GABRG3::OCA2	0.79	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.A8.A07R.01A	GAK::MAGI1	0.018	tier1	In-frame	A1 : B1	A0 : B0	NA
BRCA	TCGA.A7.A4SD.01A	GALNT10::C5orf4	0.69	tier3	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.AC.A6IW.01A	GALNT10::IQCA1	0.7	tier2	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.E2.A15A.01A	GALNT11::FKBP3	0.16	tier1	5UTR-CDS	A0 : B0	A0 : B0	NA
BRCA	TCGA.E2.A15A.06A	GALNT11::FKBP3	0.16	tier1	5UTR-CDS	A0 : B0	A0 : B0	NA
BRCA	TCGA.AO.A12E.01A	GALNT11::PRKAG2	1.1	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.AN.A0FJ.01A	GALNT14::FAM98A	0.95	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.A8.A079.01A	GALNT2::KIF26B	0.33	tier1	In-frame	A0 : B1	A0 : B0	NA
BRCA	TCGA.PE.A5DC.01A	GALNTL1::DOCK1	0.22	tier2	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.AR.A24Q.01A	GALNTL4::DENND5B	100.0	tier2	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.C8.A12Q.01A	GALNTL4::PPP1R1B	0.16	tier1	Out-of-frame	A0 : B1	A0 : B0	non-validated
BRCA	TCGA.A7.A13D.01B	GANAB::ZNF76	0.38	tier2	CDS-5UTR	A0 : B0	A0 : B0	validated
BRCA	TCGA.A8.A08P.01A	GAS8::SPIRE2	0.37	tier1	In-frame	A0 : B1	A0 : B0	NA
BRCA	TCGA.AR.A1AP.01A	GATA3::TAF3	0.53	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.AC.A5XU.01A	GATAD2A::PRKACA	0.16	tier1	Out-of-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.B6.A0I1.01A	GATAD2B::NUP210L	0.45	tier1	5UTR-CDS	A0 : B0	A0 : B0	non-validated
BRCA	TCGA.E2.A10A.01A	GATAD2B::SLC9A11	0.34	tier2	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.B6.A0RU.01A	GBA::SCAMP3	0.011	tier1	5UTR-CDS	A0 : B0	A0 : B0	non-validated
BRCA	TCGA.C8.A12U.01A	GBA2::ATP6V1C1	0.22	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.AO.A128.01A	GCFC1::ABI3BP	0.023	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.BH.A0EE.01A	GCFC1::ADAMTS1	0.66	tier3	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.AR.A1AO.01A	GCFC1::TP53I3	0.99	tier3	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.EW.A6SD.01A	GCNT2::PDE4B	2.6	tier3	CDS-5UTR	A0 : B0	A0 : B0	NA
BRCA	TCGA.A2.A0YE.01A	GDAP2::ADORA3	0.68	tier4	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.A8.A07L.01A	GDAP2::SPAG17	0.71	tier1	5UTR-CDS	A0 : B0	A0 : B0	NA
BRCA	TCGA.A7.A56D.01A	GDPD1::SMG8	4.6	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.C8.A12Q.01A	GFM1::MLF1	1.0	tier1	In-frame	A0 : B1	A0 : B0	non-validated
BRCA	TCGA.EW.A1PF.01A	GFOD1::BCAS1	0.16	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.AO.A0JG.01A	GFOD1::CYP39A1	0.68	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.AQ.A04L.01B	GFRA1::DGKB	0.68	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.GM.A2DL.01A	GGA3::ATF7	0.022	tier1	CDS-3UTR	A0 : B0	A0 : B0	NA
BRCA	TCGA.AN.A0FX.01A	GGT6::AC091153.1	0.031	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.AR.A256.01A	GIGYF2::CHRND	0.59	tier2	In-frame	A1 : B0	A1 : B0	validated
BRCA	TCGA.E9.A1NA.01A	GIGYF2::DIS3L2	0.023	tier1	In-frame	A1 : B1	A1 : B0	NA
BRCA	TCGA.A8.A07U.01A	GIGYF2::EFHD1	2.2	tier1	In-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.B6.A0IJ.01A	GIGYF2::EFHD1	2.2	tier1	In-frame	A1 : B0	A1 : B0	non-validated
BRCA	TCGA.D8.A140.01A	GIGYF2::EIF4E2	0.99	tier1	In-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.E9.A54Y.01A	GINS4::UQCRC2	0.36	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.PL.A8LZ.01A	GK5::CENPL	1.0	tier1	CDS-5UTR	A0 : B0	A0 : B0	NA
BRCA	TCGA.A2.A0CL.01A	GK5::MBNL1	0.22	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.S3.A6ZF.01A	GLA::HNRNPH2	0.36	tier2	CDS-5UTR	A0 : B0	A0 : B0	NA
BRCA	TCGA.A8.A09C.01A	GLCE::NOX5	1.8	tier2	5UTR-5UTR	A0 : B0	A0 : B0	NA
BRCA	TCGA.A8.A09C.01A	GLCE::SPESP1	0.073	tier2	5UTR-CDS	A0 : B0	A0 : B0	NA
BRCA	TCGA.BH.A1F8.01A	GLG1::COG4	0.94	tier1	In-frame	A1 : B1	A0 : B0	NA
BRCA	TCGA.A2.A1FW.01A	GLRX3::C10orf11	100.0	tier2	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.A1.A0SJ.01A	GLUL::DDX27	0.13	tier3	NA	A0 : B0	A0 : B0	NA
BRCA	TCGA.B6.A0IM.01A	GLUL::EIF2AK2	0.14	tier3	NA	A0 : B0	A0 : B0	NA
BRCA	TCGA.D8.A1XS.01A	GLUL::NDUFV1	3.3	tier3	NA	A0 : B0	A0 : B0	NA
BRCA	TCGA.OL.A5D7.01A	GLYCTK::ALAS1	0.026	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.B6.A0I1.01A	GMDS::C6orf186	0.84	tier1	In-frame	A0 : B0	A0 : B0	non-validated
BRCA	TCGA.A8.A08X.01A	GMDS::DNAH8	0.073	tier2	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.AC.A8OQ.01A	GMEB2::STMN3	0.009	tier1	In-frame	A0 : B1	A0 : B0	NA
BRCA	TCGA.A8.A08P.01A	GMPR::C8orf38	0.48	tier1	CDS-5UTR	A0 : B0	A0 : B0	NA
BRCA	TCGA.E9.A1N6.01A	GNA12::ADSS	0.12	tier1	In-frame	A0 : B1	A0 : B0	NA
BRCA	TCGA.A2.A4RW.01A	GNA14::C9orf156	1.1	tier3	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.AR.A24Q.01A	GNAI3::CASQ2	0.3	tier1	Out-of-frame	A1 : B1	A1 : B0	NA
BRCA	TCGA.AN.A0AL.01A	GNAI3::KIAA1324	0.39	tier3	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.E2.A14P.01A	GNAI3::SARS	2.6	tier1	In-frame	A1 : B0	A1 : B1	non-validated
BRCA	TCGA.AO.A03V.01A	GNAL::CSNK1E	0.18	tier2	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.E2.A159.01A	GNAQ::C9orf64	2.0	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.BH.A0H7.01A	GNB1L::DNTTIP1	0.025	tier1	5UTR-CDS	A0 : B0	A0 : B0	NA
BRCA	TCGA.EW.A1P0.01A	GNB5::PDE6D	1.6	tier2	NA	A0 : B0	A0 : B0	NA
BRCA	TCGA.A2.A25F.01A	GNE::ERP27	0.009	tier1	In-frame	A0 : B0	A1 : B0	NA
BRCA	TCGA.AC.A5XU.01A	GNG7::ARHGEF18	0.25	tier1	5UTR-CDS	A0 : B1	A0 : B0	NA
BRCA	TCGA.AR.A0TS.01A	GNL2::DNAH3	0.3	tier1	Out-of-frame	A0 : B1	A0 : B0	NA
BRCA	TCGA.AR.A2LR.01A	GNPDA2::GRID2	0.29	tier1	5UTR-CDS	A0 : B0	A0 : B0	NA
BRCA	TCGA.GM.A2DF.01A	GOLGA4::HSPA8	0.68	tier1	In-frame	A1 : B1	A0 : B1	non-validated
BRCA	TCGA.BH.A0B9.01A	GOLGA4::MLH1	0.063	tier1	In-frame	A0 : B0	A0 : B0	non-validated
BRCA	TCGA.EW.A3U0.01A	GOLGB1::CCDC58	0.081	tier1	In-frame	A0 : B0	A0 : B0	non-validated
BRCA	TCGA.OL.A66P.01A	GOLGB1::IQCB1	0.002	tier3	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.EW.A1OW.01A	GON4L::IQGAP3	0.47	tier1	In-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.A2.A1FW.01A	GON4L::PIPOX	0.19	tier1	In-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.BH.A18R.01A	GOPC::ABLIM1	0.36	tier1	In-frame	A0 : B0	A0 : B0	non-validated
BRCA	TCGA.A8.A07B.01A	GPATCH8::NPLOC4	0.11	tier1	In-frame	A1 : B1	A0 : B0	validated
BRCA	TCGA.C8.A8HQ.01A	GPBP1L1::TRAPPC9	0.17	tier1	5UTR-CDS	A0 : B0	A0 : B0	NA
BRCA	TCGA.E9.A1NA.01A	GPC4::GPC3	0.003	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.E9.A1NA.01A	GPNMB::NUPL2	2.2	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.AN.A0AL.01A	GPR107::VPS13A	0.33	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.E9.A1RE.01A	GPR126::CLSTN2	0.1	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.A2.A0EY.01A	GPR137C::FERMT2	1.6	tier1	Out-of-frame	A0 : B0	A0 : B0	non-validated
BRCA	TCGA.E9.A229.01A	GPR157::GON4L	1.5	tier1	Out-of-frame	A0 : B1	A0 : B0	NA
BRCA	TCGA.C8.A1HO.01A	GPR158::MYO16	0.14	tier1	In-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.AO.A03V.01A	GPR35::MELK	0.19	tier2	5UTR-CDS	A0 : B0	A0 : B0	NA
BRCA	TCGA.AO.A0JA.01A	GPR98::ATR	0.47	tier2	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.B6.A0I8.01A	GPR98::POLR3G	0.19	tier4	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.S3.AA0Z.01A	GPRC5B::C16orf96	0.56	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.E9.A22G.01A	GRB10::SLC2A13	0.39	tier1	In-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.BH.A202.01A	GRB7::PGAP3	0.21	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.A8.A06Q.01A	GREB1L::CEP192	1.7	tier4	5UTR-CDS	A0 : B0	A0 : B0	NA
BRCA	TCGA.AN.A0AJ.01A	GRHL2::C10orf58	1.3	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.A2.A0EQ.01A	GRHL2::PAGE3	0.011	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.C8.A12U.01A	GRHL2::TRAPPC9	0.84	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.AN.A0AJ.01A	GRHL2::TSPAN14	0.3	tier1	CDS-5UTR	A0 : B0	A0 : B0	NA
BRCA	TCGA.AR.A0TV.01A	GRHL2::ZFHX4	0.22	tier2	CDS-5UTR	A0 : B0	A0 : B0	NA
BRCA	TCGA.AO.A03P.01A	GRID1::PGPEP1L	1.1	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.OL.A5DA.01A	GRIK2::CDKAL1	0.57	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.EW.A1P1.01A	GRIK4::TMPRSS4	1.0	tier3	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.D8.A1XK.01A	GRINL1A::LPHN1	1.2	tier1	5UTR-CDS	A0 : B0	A0 : B0	NA
BRCA	TCGA.D8.A1X6.01A	GRN::NCALD	0.007	tier3	3UTR-5UTR	A0 : B0	A0 : B0	NA
BRCA	TCGA.GI.A2C9.01A	GSK3B::C3orf15	0.029	tier1	Out-of-frame	A1 : B0	A0 : B0	non-validated
BRCA	TCGA.E2.A14P.01A	GSK3B::FSTL1	0.039	tier1	In-frame	A1 : B0	A0 : B0	non-validated
BRCA	TCGA.BH.A0W7.01A	GSK3B::GPR156	4.3	tier1	CDS-5UTR	A0 : B0	A0 : B0	NA
BRCA	TCGA.A2.A04Y.01A	GSK3B::LSAMP	0.14	tier2	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.A7.A4SC.01A	GSN::UVRAG	0.44	tier4	3UTR-CDS	A0 : B0	A0 : B0	NA
BRCA	TCGA.A2.A0T4.01A	GSTA4::NADSYN1	1.6	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.AR.A254.01A	GTF2B::BPI	0.48	tier1	In-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.BH.A1FD.01A	GTF2B::CCBL2	1.2	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.S3.AA12.01A	GTF2E2::EIF4EBP1	100.0	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.S3.AA12.01A	GTF2E2::FUT10	2.9	tier2	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.A2.A0ES.01A	GTF2E2::NARS2	0.55	tier3	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.BH.A0B7.01A	GTF2F2::NBEA	0.013	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.A8.A06U.01A	GTF2H1::HPS5	0.5	tier1	5UTR-CDS	A0 : B0	A0 : B0	NA
BRCA	TCGA.A8.A0A7.01A	GTF3C2::WDR35	0.28	tier1	In-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.E2.A14S.01A	GTF3C6::LACE1	0.16	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.A8.A07J.01A	GTPBP2::HIST1H2BJ	0.9	tier1	CDS-3UTR	A0 : B0	A0 : B0	NA
BRCA	TCGA.A1.A0SP.01A	GULP1::FSIP2	0.46	tier2	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.A1.A0SP.01A	GULP1::NUP35	0.035	tier1	5UTR-CDS	A0 : B1	A0 : B0	NA
BRCA	TCGA.BH.A1F6.01A	GYS1::EML2	4.3	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.BH.A0HL.01A	H2AFJ::ARFGEF2	0.33	tier4	3UTR-CDS	A0 : B0	A0 : B0	NA
BRCA	TCGA.E2.A15E.01A	H2AFY::CNOT6	0.015	tier1	In-frame	A0 : B0	A0 : B0	non-validated
BRCA	TCGA.E2.A15E.06A	H2AFY::CNOT6	0.015	tier1	In-frame	A0 : B0	A0 : B0	non-validated
BRCA	TCGA.E2.A109.01A	HACE1::FBLN1	0.48	tier3	Out-of-frame	A0 : B1	A0 : B0	non-validated
BRCA	TCGA.AC.A62V.01A	HAP1::GAST	0.002	tier2	CDS-5UTR	A0 : B0	A0 : B0	NA
BRCA	TCGA.A2.A0EP.01A	HARS::CLINT1	0.5	tier1	Out-of-frame	A1 : B0	A1 : B0	NA
BRCA	TCGA.E9.A1RC.01A	HARS::FAM53C	1.9	tier1	CDS-5UTR	A1 : B0	A1 : B0	NA
BRCA	TCGA.EW.A2FR.01A	HAUS8::C19orf57	0.45	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.D8.A1X9.01A	HCFC1::MECP2	0.27	tier1	CDS-5UTR	A0 : B0	A0 : B0	NA
BRCA	TCGA.BH.A0B9.01A	HDAC1::KPNA6	0.56	tier1	In-frame	A1 : B1	A0 : B0	validated
BRCA	TCGA.BH.A203.01A	HDAC2::TRDN	0.039	tier1	In-frame	A1 : B0	A1 : B0	NA
BRCA	TCGA.E2.A14T.01A	HDAC7::IRAK4	0.6	tier1	CDS-5UTR	A0 : B0	A0 : B0	NA
BRCA	TCGA.AN.A0FZ.01A	HDAC9::PPL	1.0	tier3	Out-of-frame	A1 : B1	A0 : B0	NA
BRCA	TCGA.AR.A5QQ.01A	HDDC2::STBD1	2.4	tier1	CDS-5UTR	A0 : B0	A0 : B0	NA
BRCA	TCGA.BH.A0AW.01A	HDHD2::SNF8	0.63	tier1	5UTR-CDS	A0 : B0	A0 : B0	NA
BRCA	TCGA.B6.A0RM.01A	HEATR3::CHRNB3	0.082	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.A1.A0SB.01A	HEATR5B::MYB	0.021	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.AC.A62V.01A	HEATR6::C17orf64	0.13	tier4	Out-of-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.A8.A09Q.01A	HEATR6::FGF10	0.025	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.A8.A09Q.01A	HEATR6::GALNT13	2.7	tier1	In-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.E9.A1N8.01A	HEATR6::WEE1	0.45	tier1	Out-of-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.BH.A0C0.01A	HEATR7A::ARMC2	0.17	tier1	In-frame	A0 : B1	A0 : B0	NA
BRCA	TCGA.BH.A18T.01A	HEATR7A::GPAA1	0.032	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.AR.A0TV.01A	HECTD1::PRPF39	0.002	tier1	CDS-5UTR	A0 : B0	A0 : B0	NA
BRCA	TCGA.A2.A1FW.01A	HECTD2::GLRX3	0.019	tier2	CDS-3UTR	A0 : B0	A0 : B0	NA
BRCA	TCGA.A8.A09A.01A	HECTD2::PCGF5	0.35	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.C8.A1HG.01A	HECTD2::PCGF5	0.35	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.A8.A07C.01A	HEG1::SLC12A8	0.008	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.A8.A09Q.01A	HELLS::TBC1D12	0.27	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.E2.A1B5.01A	HELZ::PITPNC1	3.6	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.3C.AALI.01A	HELZ::TAF15	3.7	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.OL.A5RZ.01A	HELZ::TTYH2	0.52	tier1	Out-of-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.LL.A5YN.01A	HERC1::CSNK1G1	0.1	tier1	CDS-5UTR	A0 : B0	A0 : B0	NA
BRCA	TCGA.D8.A1JK.01A	HERC1::DAPK2	0.12	tier1	5UTR-CDS	A0 : B0	A0 : B0	NA
BRCA	TCGA.AQ.A54N.01A	HERC1::KIAA0101	2.8	tier1	Out-of-frame	A1 : B0	A1 : B0	NA
BRCA	TCGA.LL.A5YN.01A	HERC1::KIAA0101	2.8	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.A2.A1G1.01A	HERC1::USP3	0.031	tier3	In-frame	A0 : B1	A0 : B0	NA
BRCA	TCGA.AR.A0U4.01A	HERC4::RUFY2	0.2	tier1	In-frame	A1 : B1	A0 : B0	NA
BRCA	TCGA.E2.A15E.01A	HEYL::COL9A2	0.37	tier1	Out-of-frame	A0 : B0	A0 : B0	validated
BRCA	TCGA.E2.A15E.06A	HEYL::COL9A2	0.37	tier1	Out-of-frame	A0 : B0	A0 : B0	validated
BRCA	TCGA.C8.A1HK.01A	HGSNAT::MBOAT1	0.17	tier2	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.AN.A0FT.01A	HHAT::CD34	0.37	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.S3.A6ZG.01A	HHAT::RFWD2	1.4	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.AC.A2BM.01A	HHAT::SERTAD4	0.67	tier1	CDS-5UTR	A0 : B0	A0 : B0	NA
BRCA	TCGA.E2.A1LK.01A	HHIPL2::TLR5	0.37	tier3	CDS-5UTR	A0 : B0	A0 : B0	validated
BRCA	TCGA.A8.A09M.01A	HIBCH::CTNNA2	0.031	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.D8.A1JL.01A	HIF1A::MNAT1	0.11	tier1	In-frame	A1 : B1	A1 : B0	NA
BRCA	TCGA.BH.A0DD.01A	HIPK3::TOLLIP	0.97	tier1	5UTR-CDS	A0 : B0	A0 : B1	NA
BRCA	TCGA.BH.A0AU.01A	HIRA::CABIN1	0.089	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.A8.A09N.01A	HIST1H2AC::SLC17A4	0.059	tier1	3UTR-CDS	A0 : B0	A0 : B0	NA
BRCA	TCGA.LL.A740.01A	HIVEP1::DST	0.053	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.A2.A0CX.01A	HIVEP1::OFCC1	0.48	tier1	NA	A0 : B0	A0 : B0	NA
BRCA	TCGA.BH.A1F0.01A	HIVEP3::ASCC3	1.0	tier1	5UTR-CDS	A0 : B0	A0 : B0	NA
BRCA	TCGA.BH.A18J.01A	HIVEP3::CREB3L4	0.22	tier1	5UTR-CDS	A0 : B0	A0 : B0	NA
BRCA	TCGA.BH.A1FE.06A	HLA-B::SNW1	0.41	tier4	3UTR-CDS	A0 : B0	A0 : B0	NA
BRCA	TCGA.S3.AA0Z.01A	HLA-B::UBR5	6.9	tier3	3UTR-CDS	A0 : B1	A0 : B1	NA
BRCA	TCGA.BH.A0B6.01A	HLA-C::CFB	0.064	tier1	NA	A0 : B0	A0 : B0	NA
BRCA	TCGA.E2.A158.01A	HLCS::CD53	0.34	tier2	CDS-5UTR	A0 : B0	A0 : B0	NA
BRCA	TCGA.AR.A256.01A	HMCN1::RNF2	0.055	tier2	Out-of-frame	A0 : B1	A0 : B0	validated
BRCA	TCGA.HN.A2NL.01A	HN1::GGA3	0.81	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.AC.A3EH.01A	HNRNPF::ATAD1	0.037	tier1	5UTR-5UTR	A0 : B0	A0 : B0	NA
BRCA	TCGA.E2.A1LE.01A	HNRNPH1::RNF130	1.2	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.A8.A09Q.01A	HNRNPM::CERS4	0.047	tier1	CDS-5UTR	A1 : B0	A1 : B0	NA
BRCA	TCGA.BH.A1F0.01A	HNRNPUL2::TTC9C	0.094	tier4	In-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.S3.AA0Z.01A	HOOK2::NFIX	0.044	tier1	In-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.A2.A0D1.01A	HOOK3::IKBKB	0.008	tier1	In-frame	A1 : B1	A0 : B1	non-validated
BRCA	TCGA.BH.A0HX.01A	HOOK3::MTFR1	0.28	tier1	NA	A0 : B0	A0 : B0	NA
BRCA	TCGA.E2.A15M.01A	HOOK3::PLEKHA2	0.61	tier1	Out-of-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.AR.A1AT.01A	HOOK3::TADA2A	0.24	tier1	NA	A0 : B0	A0 : B0	NA
BRCA	TCGA.A2.A0EW.01A	HOOK3::TM2D2	1.3	tier1	CDS-5UTR	A1 : B0	A0 : B0	NA
BRCA	TCGA.A1.A0SO.01A	HPCAL1::CPSF3	2.6	tier4	5UTR-CDS	A0 : B0	A0 : B0	NA
BRCA	TCGA.B6.A0RT.01A	HPN::PPP2R5C	1.3	tier1	Out-of-frame	A0 : B1	A0 : B0	non-validated
BRCA	TCGA.AR.A24W.01A	HPRT1::CTPS2	2.6	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.BH.A1F0.01A	HPS3::PHF17	0.96	tier4	CDS-5UTR	A1 : B0	A0 : B0	NA
BRCA	TCGA.A8.A06U.01A	HPS5::SETD5	0.33	tier1	CDS-5UTR	A0 : B0	A0 : B0	NA
BRCA	TCGA.AN.A0FZ.01A	HS2ST1::GBP6	0.72	tier1	CDS-5UTR	A0 : B0	A0 : B0	NA
BRCA	TCGA.A2.A0YE.01A	HS2ST1::PRDX1	1.0	tier1	CDS-5UTR	A0 : B0	A0 : B0	NA
BRCA	TCGA.S3.AA10.01A	HS6ST2::ODZ1	0.048	tier3	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.B6.A0X1.01A	HSD17B3::ENPP2	1.6	tier2	Out-of-frame	A0 : B1	A0 : B0	NA
BRCA	TCGA.A2.A0EW.01A	HSDL2::FRMD3	0.63	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.BH.A0B3.01A	HSF1::ADAMTS12	2.3	tier1	Out-of-frame	A1 : B0	A0 : B0	validated
BRCA	TCGA.BH.A0WA.01A	HSP90AB1::SLC29A1	0.82	tier1	5UTR-5UTR	A0 : B0	A0 : B0	non-validated
BRCA	TCGA.AR.A0TV.01A	HSP90AB1::TAF3	0.13	tier4	NA	A0 : B0	A0 : B0	NA
BRCA	TCGA.BH.A0B6.01A	HSP90B1::CFB	0.39	tier3	NA	A0 : B0	A0 : B0	NA
BRCA	TCGA.A7.A2KD.01A	HSPA14::MRPS35	1.6	tier1	Out-of-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.D8.A1JL.01A	HSPA9::ARL15	1.0	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.AC.A5XU.01A	HSPB1::AC011333.1	0.95	tier3	NA	A0 : B0	A0 : B0	NA
BRCA	TCGA.AC.A3OD.01B	HSPH1::KIAA0825	0.19	tier1	Out-of-frame	A0 : B1	A0 : B0	NA
BRCA	TCGA.A2.A04W.01A	HTATSF1::BRS3	0.3	tier4	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.A8.A06X.01A	HTATSF1::BRS3	0.3	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.C8.A12L.01A	HTRA1::TYK2	0.33	tier2	3UTR-5UTR	A0 : B0	A0 : B0	non-validated
BRCA	TCGA.E9.A1R6.01A	HTT::ESYT2	0.24	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.BH.A18T.01A	HUWE1::PHF8	0.075	tier1	Out-of-frame	A1 : B0	A1 : B0	NA
BRCA	TCGA.OL.A5RZ.01A	HYI::NFIA	0.73	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.BH.A0DX.01A	ICMT::GPR153	0.2	tier1	CDS-5UTR	A0 : B0	A0 : B0	NA
BRCA	TCGA.A7.A13D.01A	ICOSLG::KCNJ6	2.2	tier2	In-frame	A0 : B0	A0 : B0	validated
BRCA	TCGA.B6.A0I1.01A	IFFO2::UBR4	1.0	tier3	In-frame	A0 : B0	A0 : B0	non-validated
BRCA	TCGA.A7.A2KD.01A	IFI44L::SLC44A3	0.21	tier1	5UTR-CDS	A0 : B0	A0 : B0	NA
BRCA	TCGA.A8.A06O.01A	IFITM10::DENND5A	0.016	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.B6.A0RT.01A	IFT74::LDLRAD3	0.024	tier3	Out-of-frame	A1 : B0	A0 : B0	non-validated
BRCA	TCGA.AR.A250.01A	IFT88::WASF3	0.016	tier3	CDS-5UTR	A1 : B0	A0 : B0	NA
BRCA	TCGA.GM.A2DK.01A	IGF1R::ADPGK	1.1	tier1	Out-of-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.E9.A1NF.01A	IGF1R::ARID1B	0.082	tier1	In-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.C8.A1HI.01A	IGF1R::C15orf41	0.025	tier1	CDS-5UTR	A1 : B0	A0 : B0	NA
BRCA	TCGA.A8.A09E.01A	IGF1R::PRPS1	0.87	tier1	In-frame	A0 : B1	A0 : B0	NA
BRCA	TCGA.BH.A1FG.01A	IGF1R::RAB27A	1.5	tier3	CDS-5UTR	A1 : B0	A0 : B0	NA
BRCA	TCGA.C8.A1HI.01A	IGF1R::TRIP4	0.25	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.A1.A0SF.01A	IGF1R::WDR93	0.083	tier2	CDS-5UTR	A1 : B0	A0 : B0	NA
BRCA	TCGA.EW.A1PB.01A	IGF2BP2::NCEH1	0.62	tier2	Out-of-frame	A1 : B0	A1 : B0	non-validated
BRCA	TCGA.AO.A124.01A	IGF2BP3::ACSM1	1.1	tier2	In-frame	A0 : B0	A0 : B0	non-validated
BRCA	TCGA.BH.A0BL.01A	IGF2R::ACVR2A	1.9	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.E9.A248.01A	IGF2R::PREP	0.94	tier1	Out-of-frame	A1 : B1	A0 : B0	NA
BRCA	TCGA.A8.A079.01A	IGFBP5::CXCR5	0.28	tier3	3UTR-5UTR	A0 : B0	A0 : B0	NA
BRCA	TCGA.AQ.A04L.01B	IGHMBP2::C7orf72	3.5	tier3	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.BH.A0W3.01A	IGSF3::KDM2A	0.003	tier2	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.BH.A0GY.01A	IGSF3::MAN1A2	0.64	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.C8.A12L.01A	IGSF3::TBX15	0.93	tier1	Out-of-frame	A0 : B0	A0 : B0	non-validated
BRCA	TCGA.E2.A159.01A	IKBIP::ANKS1B	0.44	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.EW.A1PD.01A	IKBKAP::TBC1D2	0.67	tier2	5UTR-CDS	A0 : B1	A0 : B0	NA
BRCA	TCGA.EW.A6SB.01A	IKBKB::ANK1	0.076	tier1	In-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.AR.A2LK.01A	IKBKB::FADD	2.5	tier1	Out-of-frame	A1 : B0	A0 : B0	non-validated
BRCA	TCGA.XX.A899.01A	IKBKB::RP11-930P14.1	0.41	tier4	Out-of-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.D8.A27H.01A	IKZF1::LRBA	2.3	tier1	In-frame	A1 : B0	A1 : B0	validated
BRCA	TCGA.AR.A250.01A	IKZF3::BCAS3	0.36	tier1	Out-of-frame	A0 : B1	A0 : B0	NA
BRCA	TCGA.3C.AALI.01A	IKZF3::PNMT	0.4	tier4	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.AN.A0AM.01A	IL12RB2::DAB1	2.9	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.AN.A0FJ.01A	IL12RB2::PDE4B	0.65	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.BH.A203.01A	IL1R1::IL1R2	1.0	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.GM.A2DK.01A	IL1RAPL1::MAGEB10	3.1	tier2	CDS-5UTR	A0 : B0	A0 : B0	NA
BRCA	TCGA.BH.A1FD.01A	IL1RL2::IL1R2	0.51	tier2	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.AQ.A1H3.01A	IL27RA::RLN3	0.019	tier2	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.OL.A66I.01A	IL28RA::C1orf201	0.45	tier3	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.A2.A3XW.01A	IL4I1::KCNQ2	0.022	tier1	5UTR-CDS	A0 : B1	A0 : B0	NA
BRCA	TCGA.A2.A0YJ.01A	ILF3::C3	0.32	tier1	5UTR-CDS	A0 : B0	A0 : B0	NA
BRCA	TCGA.XX.A89A.01A	ILF3::DENND2D	0.13	tier1	Out-of-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.A7.A26G.01A	ILKAP::PER2	0.34	tier1	In-frame	A0 : B0	A0 : B0	validated
BRCA	TCGA.B6.A0IQ.01A	ILVBL::SYDE1	0.076	tier1	In-frame	A0 : B1	A0 : B0	non-validated
BRCA	TCGA.AN.A0AS.01A	IMPAD1::ZCCHC24	4.4	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.A8.A06R.01A	INADL::CACHD1	5.7	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.E2.A15P.01A	INADL::GLIS1	3.0	tier1	CDS-5UTR	A0 : B0	A0 : B0	NA
BRCA	TCGA.EW.A3U0.01A	INADL::ST6GALNAC5	0.33	tier1	5UTR-CDS	A0 : B0	A0 : B0	validated
BRCA	TCGA.C8.A1HI.01A	INO80::PRKCA	0.37	tier3	In-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.AR.A0TT.01A	INPP5A::DLG2	0.83	tier1	In-frame	A0 : B1	A0 : B0	NA
BRCA	TCGA.AO.A03P.01A	INPP5A::FAM149B1	0.013	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.AO.A03O.01A	INPP5A::KIF20B	0.69	tier2	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.A2.A04U.01A	INSIG1::DPP6	0.15	tier2	In-frame	A0 : B1	A0 : B0	NA
BRCA	TCGA.A1.A0SN.01A	INTS2::AXIN2	0.26	tier2	CDS-5UTR	A1 : B0	A0 : B0	NA
BRCA	TCGA.D8.A27G.01A	INTS2::LIMD2	0.68	tier2	CDS-5UTR	A0 : B0	A0 : B0	NA
BRCA	TCGA.A8.A079.01A	INTS4::C11orf30	0.77	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.AC.A2BM.01A	INTS4::GAB2	0.056	tier1	In-frame	A1 : B1	A0 : B0	NA
BRCA	TCGA.D8.A140.01A	INTS4::KCTD14	0.66	tier2	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.A8.A0A6.01A	INTS4::POLD3	0.43	tier1	NA	A0 : B0	A0 : B0	NA
BRCA	TCGA.A8.A086.01A	INTS4::PPFIA1	2.1	tier1	In-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.C8.A135.01A	INTS5::SYT12	0.53	tier1	CDS-5UTR	A0 : B0	A0 : B0	NA
BRCA	TCGA.A8.A09A.01A	INTS8::DPY19L4	0.29	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.C8.A12L.01A	INTS8::RP11-219B4.5	1.2	tier1	In-frame	A0 : B0	A0 : B0	validated
BRCA	TCGA.A7.A6VX.01A	INTS9::AC130352.1	0.85	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.A1.A0SK.01A	IP6K2::PRKAR2A	1.7	tier2	5UTR-CDS	A0 : B0	A0 : B0	NA
BRCA	TCGA.B6.A0I8.01A	IPO11::CENPJ	0.19	tier1	5UTR-CDS	A0 : B0	A0 : B0	NA
BRCA	TCGA.A8.A08L.01A	IPO11::TNFAIP8	1.9	tier1	In-frame	A0 : B0	A0 : B0	validated
BRCA	TCGA.A2.A04P.01A	IPO8::CDH13	0.12	tier1	Out-of-frame	A0 : B0	A0 : B0	non-validated
BRCA	TCGA.AO.A03L.01A	IQCB1::CACNG4	3.8	tier1	5UTR-CDS	A0 : B0	A0 : B0	non-validated
BRCA	TCGA.AR.A24O.01A	IQCB1::ILDR1	3.0	tier4	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.BH.A0C0.01A	IQGAP1::MESP2	0.034	tier1	In-frame	A1 : B0	A1 : B0	NA
BRCA	TCGA.BH.A0AV.01A	IQGAP1::TTLL13	0.71	tier3	In-frame	A1 : B0	A1 : B0	non-validated
BRCA	TCGA.AR.A24Z.01A	IQGAP2::ACOT12	0.43	tier2	Out-of-frame	A1 : B0	A0 : B0	validated
BRCA	TCGA.AR.A0U4.01A	IQGAP3::ETV3	0.008	tier1	Out-of-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.BH.A18R.01A	IQGAP3::SH2D2A	1.2	tier2	In-frame	A1 : B0	A0 : B0	non-validated
BRCA	TCGA.A1.A0SN.01A	IQUB::ASB15	0.031	tier1	5UTR-5UTR	A0 : B0	A0 : B0	NA
BRCA	TCGA.AC.A2BM.01A	ITCH::RALY	5.0	tier1	CDS-5UTR	A0 : B0	A0 : B0	NA
BRCA	TCGA.BH.A0H7.01A	ITCH::TAB1	2.6	tier2	5UTR-CDS	A0 : B0	A0 : B0	NA
BRCA	TCGA.E2.A9RU.01A	ITGB1::DYM	0.38	tier3	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.A8.A08O.01A	ITGB4::NARF	1.3	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.C8.A26X.01A	ITGB4::SLC16A5	0.43	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.AO.A03L.01A	ITGB5::PARP14	1.2	tier1	Out-of-frame	A0 : B0	A0 : B0	validated
BRCA	TCGA.D8.A1XK.01A	ITGB6::RBMS1	0.71	tier1	In-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.PL.A8LX.01A	ITPA::SLC22A24	2.0	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.BH.A0HY.01A	ITPK1::ACO1	1.5	tier1	CDS-5UTR	A0 : B0	A0 : B0	NA
BRCA	TCGA.AO.A0J2.01A	ITPKB::ZC3HAV1	0.45	tier1	In-frame	A0 : B0	A0 : B0	validated
BRCA	TCGA.BH.A18V.01A	ITPKC::LTBP4	0.051	tier1	In-frame	A0 : B1	A0 : B0	NA
BRCA	TCGA.BH.A18V.06A	ITPKC::LTBP4	0.051	tier1	In-frame	A0 : B1	A0 : B0	NA
BRCA	TCGA.BH.A18V.06A	ITPKC::SPTBN4	0.3	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.A7.A4SD.01A	ITPR2::ANO2	1.4	tier2	In-frame	A0 : B1	A0 : B0	NA
BRCA	TCGA.EW.A1P4.01A	ITPR3::AL353597.1	0.38	tier3	In-frame	A1 : B0	A1 : B0	NA
BRCA	TCGA.A1.A0SO.01A	ITSN1::KIAA1211	0.23	tier4	5UTR-5UTR	A0 : B0	A0 : B0	NA
BRCA	TCGA.E2.A1LE.01A	ITSN2::NMT1	0.026	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.E2.A9RU.01A	JARID2::BMP6	0.047	tier1	Out-of-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.C8.A26X.01A	JDP2::VRTN	0.49	tier1	CDS-5UTR	A0 : B0	A0 : B0	NA
BRCA	TCGA.B6.A0IN.01A	JHDM1D::SND1	1.1	tier2	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.A2.A4RW.01A	KAL1::ARHGEF26	1.2	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.AN.A0XL.01A	KANK1::DOCK8	1.8	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.E2.A15A.01A	KAT6A::ADAM2	0.88	tier1	Out-of-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.E2.A15A.06A	KAT6A::ADAM2	0.88	tier1	Out-of-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.A8.A06T.01A	KAT6A::IKBKB	3.6	tier1	In-frame	A1 : B1	A0 : B0	NA
BRCA	TCGA.AO.A03P.01A	KAT6A::IKBKB	3.6	tier1	Out-of-frame	A1 : B1	A0 : B1	NA
BRCA	TCGA.AC.A5XU.01A	KAT6A::KLK4	1.5	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.BH.A202.01A	KAT6A::MSR1	0.34	tier1	CDS-5UTR	A1 : B0	A0 : B0	NA
BRCA	TCGA.C8.A12Q.01A	KAT6B::ADK	0.61	tier1	Out-of-frame	A1 : B0	A0 : B0	non-validated
BRCA	TCGA.E2.A574.01A	KAT6B::ADK	0.61	tier1	In-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.AQ.A04L.01B	KAT6B::C10orf96	0.5	tier1	In-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.E9.A228.01A	KAT6B::DDX4	0.07	tier1	CDS-5UTR	A0 : B0	A0 : B0	NA
BRCA	TCGA.A2.A25B.01A	KAT6B::RTKN2	0.046	tier4	In-frame	A0 : B0	A0 : B0	non-validated
BRCA	TCGA.A8.A076.01A	KAT7::AXIN2	0.17	tier1	CDS-5UTR	A1 : B0	A0 : B0	NA
BRCA	TCGA.JL.A3YW.01A	KATNA1::LATS1	1.8	tier3	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.A8.A08I.01A	KATNA1::PPP2R1A	2.7	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.E9.A248.01A	KATNAL1::WASF3	1.3	tier4	5UTR-CDS	A0 : B1	A0 : B0	NA
BRCA	TCGA.BH.A1FC.01A	KAZN::ST3GAL3	0.15	tier1	Out-of-frame	A0 : B0	A0 : B0	non-validated
BRCA	TCGA.EW.A1P4.01A	KCMF1::PRKDC	0.04	tier1	In-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.EW.A6S9.01A	KCNC3::ASPDH	0.057	tier2	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.AN.A0FJ.01A	KCNC4::GSTM4	1.8	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.A8.A06U.01A	KCNE2::HTN3	100.0	tier2	5UTR-CDS	A0 : B0	A0 : B0	NA
BRCA	TCGA.EW.A6SA.01A	KCNH1::LPGAT1	0.86	tier1	CDS-5UTR	A0 : B0	A0 : B0	NA
BRCA	TCGA.BH.A1FM.01A	KCNJ3::GALNT13	0.28	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.C8.A135.01A	KCNMA1::DLG5	0.52	tier3	Out-of-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.EW.A1OV.01A	KCNMA1::ECD	0.22	tier1	CDS-5UTR	A1 : B0	A0 : B0	NA
BRCA	TCGA.A2.A25D.01A	KCNMA1::MSMB	1.6	tier1	In-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.E2.A106.01A	KCNMA1::RFX2	0.002	tier1	CDS-5UTR	A1 : B0	A0 : B0	NA
BRCA	TCGA.A2.A0CW.01A	KCNN3::DCST2	0.88	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.D8.A1JG.01B	KCNQ1::TSPAN32	0.012	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.D8.A27H.01A	KCTD20::JARID2	0.33	tier1	Out-of-frame	A0 : B1	A0 : B0	validated
BRCA	TCGA.A2.A0D2.01A	KDM2A::FBXO3	0.14	tier2	Out-of-frame	A1 : B0	A0 : B0	non-validated
BRCA	TCGA.AO.A0J6.01A	KDM2A::GRIP1	0.35	tier3	Out-of-frame	A1 : B0	A0 : B0	non-validated
BRCA	TCGA.A1.A0SN.01A	KDM2A::MAP3K3	1.1	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.AO.A0J3.01A	KDM2A::PPP6R3	0.34	tier1	Out-of-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.B6.A0IG.01A	KDM2A::RHOD	0.26	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.EW.A1PB.01A	KDM2A::RHOD	0.26	tier1	In-frame	A1 : B0	A0 : B0	non-validated
BRCA	TCGA.BH.A18R.01A	KDM2A::SYT12	0.3	tier1	CDS-5UTR	A1 : B0	A0 : B0	non-validated
BRCA	TCGA.BH.A0B3.01A	KDM3A::RFX8	1.2	tier1	CDS-5UTR	A0 : B0	A0 : B0	non-validated
BRCA	TCGA.BH.A18J.01A	KDM4A::CREB3L4	0.97	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.D8.A1XZ.01A	KDM4A::HYI	0.35	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.A2.A04P.01A	KDM4A::PTPRF	1.2	tier3	5UTR-CDS	A0 : B0	A0 : B0	validated
BRCA	TCGA.A7.A13E.01A	KDM4B::C19orf44	0.19	tier1	5UTR-5UTR	A0 : B0	A0 : B0	NA
BRCA	TCGA.BH.A0B9.01A	KDM4B::UHRF1	0.23	tier1	5UTR-CDS	A0 : B0	A0 : B0	non-validated
BRCA	TCGA.BH.A0H7.01A	KDM4B::UHRF1	0.23	tier1	In-frame	A0 : B1	A0 : B1	NA
BRCA	TCGA.EW.A6S9.01A	KDM4C::ARMC2	1.9	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.E9.A1NA.01A	KDM4C::JAK2	0.25	tier2	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.A1.A0SK.01A	KDM5A::ANO2	1.4	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.AO.A124.01A	KDM5A::NINJ2	0.011	tier1	In-frame	A0 : B0	A0 : B0	validated
BRCA	TCGA.A2.A1FW.01A	KDM5B::RABGAP1L	0.012	tier1	Out-of-frame	A1 : B0	A1 : B0	NA
BRCA	TCGA.BH.A0BF.01A	KDM6A::PDHX	0.15	tier1	Out-of-frame	A0 : B1	A0 : B0	NA
BRCA	TCGA.A7.A13D.01A	KDM6B::TMEM95	0.007	tier1	Out-of-frame	A0 : B0	A0 : B0	non-validated
BRCA	TCGA.A1.A0SO.01A	KHDC1::NLK	0.71	tier4	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.OL.A66P.01A	KHDC1::OOEP	100.0	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.GI.A2C9.01A	KHDRBS3::ADI1	3.3	tier1	In-frame	A0 : B0	A0 : B0	non-validated
BRCA	TCGA.AO.A03N.01B	KHSRP::CD70	0.1	tier1	In-frame	A0 : B0	A0 : B0	non-validated
BRCA	TCGA.A7.A2KD.01A	KIAA0100::TEX14	1.3	tier1	Out-of-frame	A1 : B1	A0 : B0	NA
BRCA	TCGA.BH.A1FU.01A	KIAA0101::TRIP4	1.3	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.A2.A0CY.01A	KIAA0146::SYNC	5.9	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.A2.A25A.01A	KIAA0182::HSD17B2	0.38	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.A2.A25B.01A	KIAA0182::KIAA0513	0.16	tier4	CDS-5UTR	A0 : B0	A0 : B0	non-validated
BRCA	TCGA.A7.A2KD.01A	KIAA0182::METTL23	1.0	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.AO.A03M.01B	KIAA0195::ICT1	0.59	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.JL.A3YW.01A	KIAA0195::ICT1	0.59	tier1	5UTR-CDS	A0 : B0	A0 : B0	NA
BRCA	TCGA.LL.A441.01A	KIAA0232::INPP4B	0.71	tier1	Out-of-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.C8.A1HK.01A	KIAA0240::CYB5R4	0.15	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.D8.A140.01A	KIAA0240::HIST1H2AC	0.031	tier1	CDS-3UTR	A0 : B0	A0 : B0	NA
BRCA	TCGA.AR.A251.01A	KIAA0240::UBR2	0.15	tier2	5UTR-CDS	A0 : B1	A0 : B0	NA
BRCA	TCGA.A8.A06O.01A	KIAA0247::RAD51B	1.7	tier1	5UTR-CDS	A0 : B0	A0 : B0	NA
BRCA	TCGA.D8.A1XJ.01A	KIAA0319L::PHC2	2.3	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.D8.A1JI.01A	KIAA0368::PACS1	1.2	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.A8.A06Y.01A	KIAA0368::WNK2	0.048	tier2	5UTR-CDS	A0 : B1	A0 : B0	NA
BRCA	TCGA.E2.A1LL.01A	KIAA0528::ITPR2	0.48	tier1	In-frame	A0 : B0	A0 : B0	non-validated
BRCA	TCGA.AR.A1AR.01A	KIAA0528::PLCZ1	0.028	tier2	CDS-5UTR	A0 : B0	A0 : B0	NA
BRCA	TCGA.E9.A1N8.01A	KIAA0556::NECAB2	0.11	tier3	In-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.BH.A0HY.01A	KIAA0564::PTPRG	0.19	tier2	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.BH.A18G.01A	KIAA0564::RB1	0.35	tier3	In-frame	A0 : B1	A0 : B0	NA
BRCA	TCGA.E9.A1N4.01A	KIAA0664::DLG5	0.11	tier3	In-frame	A0 : B1	A0 : B0	NA
BRCA	TCGA.AC.A3OD.01A	KIAA0825::HSPH1	0.19	tier2	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.C8.A12K.01A	KIAA0922::MND1	0.6	tier4	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.EW.A1OZ.01A	KIAA0930::ANK3	0.94	tier1	In-frame	A1 : B1	A0 : B0	NA
BRCA	TCGA.D8.A1JP.01A	KIAA1033::AUTS2	1.3	tier1	Out-of-frame	A1 : B1	A1 : B0	NA
BRCA	TCGA.AC.A2QH.01A	KIAA1109::CHODL	0.41	tier2	NA	A0 : B0	A0 : B0	NA
BRCA	TCGA.C8.A12L.01A	KIAA1109::GPR125	0.061	tier1	Out-of-frame	A0 : B0	A0 : B0	validated
BRCA	TCGA.A1.A0SO.01A	KIAA1211::ITSN1	0.019	tier3	5UTR-5UTR	A0 : B0	A0 : B0	NA
BRCA	TCGA.E2.A14Q.01A	KIAA1211::STMN1	0.98	tier1	5UTR-5UTR	A0 : B0	A0 : B0	NA
BRCA	TCGA.EW.A1P1.01A	KIAA1217::PFKFB3	1.2	tier3	Out-of-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.AN.A0AM.01A	KIAA1244::AC093158.1	0.041	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.AC.A2FB.01A	KIAA1267::LAYN	0.034	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.AC.A23H.01A	KIAA1267::ORMDL3	0.42	tier1	CDS-5UTR	A0 : B0	A0 : B0	NA
BRCA	TCGA.BH.A0B9.01A	KIAA1429::CAMK2A	0.36	tier3	Out-of-frame	A1 : B0	A0 : B0	non-validated
BRCA	TCGA.E2.A15E.01A	KIAA1430::CCDC110	0.012	tier2	Out-of-frame	A0 : B0	A0 : B0	validated
BRCA	TCGA.E2.A15E.06A	KIAA1430::CCDC110	0.012	tier1	In-frame	A0 : B0	A0 : B0	validated
BRCA	TCGA.LL.A73Z.01A	KIAA1598::FAM24B	1.3	tier1	CDS-5UTR	A0 : B0	A0 : B0	NA
BRCA	TCGA.A2.A0D0.01A	KIAA1755::HS6ST2	1.0	tier1	Out-of-frame	A0 : B0	A0 : B0	non-validated
BRCA	TCGA.A2.A0CX.01A	KIF13A::TPMT	0.78	tier3	In-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.B6.A0WV.01A	KIF13B::EPN2	1.5	tier1	CDS-5UTR	A1 : B0	A0 : B0	NA
BRCA	TCGA.A2.A0ES.01A	KIF13B::ODZ4	0.36	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.AO.A0J5.01A	KIF13B::TMEM66	0.67	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.A8.A07W.01A	KIF16B::HIPK3	0.4	tier3	Out-of-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.E2.A159.01A	KIF1B::MYO5B	1.0	tier1	Out-of-frame	A1 : B1	A1 : B0	NA
BRCA	TCGA.BH.A0B7.01A	KIF5B::HPS4	0.022	tier1	Out-of-frame	A1 : B0	A1 : B0	NA
BRCA	TCGA.OL.A5D8.01A	KIFAP3::DUSP27	2.1	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.BH.A1EV.01A	KIRREL::RBP7	2.5	tier1	Out-of-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.BH.A0WA.01A	KLF3::SCFD2	7.1	tier1	Out-of-frame	A0 : B0	A0 : B0	non-validated
BRCA	TCGA.C8.A1HN.01A	KLHDC4::SPG7	2.6	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.A2.A3KC.01A	KLHL18::TEX264	0.11	tier1	CDS-5UTR	A0 : B0	A0 : B0	validated
BRCA	TCGA.A2.A0YE.01A	KLHL26::C19orf50	0.61	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.BH.A0HL.01A	KLHL32::ROBO1	1.0	tier3	Out-of-frame	A0 : B1	A0 : B0	NA
BRCA	TCGA.BH.A0B2.01A	KLRAQ1::WARS2	0.31	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.BH.A0EE.01A	KPNA3::RP11-47I22.3	2.5	tier1	In-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.BH.A0EE.01A	KPNA3::RP11-47I22.4	1.5	tier1	NA	A0 : B0	A0 : B0	NA
BRCA	TCGA.D8.A27G.01A	KPNB1::SKAP1	0.067	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.E2.A1AZ.01A	KRAS::RERGL	0.82	tier1	Out-of-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.JL.A3YX.01A	KRT19::COL5A1	0.42	tier3	3UTR-5UTR	A0 : B0	A0 : B0	NA
BRCA	TCGA.E2.A14V.01A	KSR1::MSI2	1.7	tier1	In-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.OL.A5RZ.01A	KSR1::PIPOX	0.16	tier2	In-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.A2.A0D0.01A	KSR2::P2RX4	1.2	tier2	In-frame	A0 : B0	A0 : B0	validated
BRCA	TCGA.A2.A0EY.01A	L2HGDH::LMBRD1	0.27	tier1	Out-of-frame	A0 : B0	A0 : B0	non-validated
BRCA	TCGA.AN.A0AJ.01A	LACE1::ZUFSP	0.11	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.BH.A0H7.01A	LAMA3::PSMA8	2.4	tier4	In-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.A1.A0SJ.01A	LAMA5::C12orf28	0.36	tier1	CDS-5UTR	A1 : B0	A0 : B0	NA
BRCA	TCGA.AC.A8OQ.01A	LAMA5::C20orf151	0.008	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.D8.A27F.01A	LAMA5::UBN1	0.21	tier1	In-frame	A1 : B0	A0 : B0	non-validated
BRCA	TCGA.A2.A25F.01A	LANCL2::TFDP2	1.5	tier4	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.AC.A6IW.01A	LAPTM4A::SDC1	0.72	tier1	In-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.A2.A0YT.01A	LARGE::SNW1	4.1	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.BH.A5IZ.01A	LARP4::RYR3	3.6	tier1	Out-of-frame	A0 : B0	A1 : B0	NA
BRCA	TCGA.E9.A1R7.01A	LARP4B::PFKFB3	0.9	tier3	In-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.E2.A1LL.01A	LCOR::CPNE8	0.37	tier1	5UTR-CDS	A0 : B0	A0 : B0	validated
BRCA	TCGA.BH.A1FE.01A	LDLR::TNPO2	0.98	tier1	CDS-5UTR	A0 : B0	A0 : B0	NA
BRCA	TCGA.E9.A1R7.01A	LDLRAD1::FGGY	0.69	tier2	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.E9.A22G.01A	LDLRAD3::CD44	0.62	tier1	In-frame	A0 : B1	A0 : B0	NA
BRCA	TCGA.D8.A142.01A	LDLRAD3::ELP4	0.92	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.AN.A0AM.01A	LEMD3::LYZ	0.021	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.3C.AAAU.01A	LEMD3::RASSF6	0.29	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.C8.A1HN.01A	LEMD3::XPOT	0.09	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.UL.AAZ6.01A	LENG8::SIPA1L3	0.14	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.AN.A0AS.01A	LGALS12::PLAC9	0.17	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.BH.A203.01A	LGALS8::EDARADD	0.055	tier1	5UTR-CDS	A0 : B0	A0 : B0	NA
BRCA	TCGA.E2.A15M.01A	LGALS8::TRIM67	0.61	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.BH.A0AV.01A	LGR6::GPR37L1	1.1	tier2	Out-of-frame	A1 : B0	A0 : B0	non-validated
BRCA	TCGA.A7.A26G.01A	LIFR::C9	0.023	tier1	Out-of-frame	A0 : B0	A0 : B0	non-validated
BRCA	TCGA.AR.A0TT.01A	LIG3::C19orf50	0.21	tier4	CDS-5UTR	A1 : B0	A0 : B0	NA
BRCA	TCGA.OL.A6VO.01A	LIG3::HAP1	0.75	tier3	NA	A0 : B0	A0 : B0	NA
BRCA	TCGA.E9.A1RF.01A	LIG3::ZFAT	0.051	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.AR.A0U4.01A	LIMA1::TRAPPC9	0.62	tier1	In-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.D8.A1X5.01A	LIMCH1::APBB2	0.67	tier1	CDS-5UTR	A1 : B0	A0 : B0	NA
BRCA	TCGA.A7.A13D.01A	LIMK2::OSBP2	0.16	tier1	Out-of-frame	A0 : B0	A0 : B0	validated
BRCA	TCGA.A8.A07O.01A	LIMK2::RUFY1	1.3	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.AR.A24L.01A	LIN52::C14orf45	0.31	tier4	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.A8.A08F.01A	LIN7A::TRHDE	0.35	tier4	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.LL.A7T0.01A	LMAN2L::MRPS5	100.0	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.AR.A24Q.01A	LMBR1::EPHA1	2.1	tier2	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.A2.A0D2.01A	LMBR1::PTPRN2	0.83	tier1	Out-of-frame	A0 : B0	A0 : B0	validated
BRCA	TCGA.AR.A24K.01A	LMBR1::PTPRN2	0.83	tier1	In-frame	A0 : B1	A0 : B0	NA
BRCA	TCGA.C8.A1HN.01A	LMBR1::TPRG1	0.079	tier3	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.C8.A1HK.01A	LMBRD1::EYS	0.24	tier4	In-frame	A0 : B1	A0 : B0	NA
BRCA	TCGA.A2.A3XU.01A	LMNA::PTN	0.052	tier4	3UTR-CDS	A0 : B0	A0 : B0	NA
BRCA	TCGA.AQ.A54N.01A	LMNA::SYT11	2.1	tier1	Out-of-frame	A1 : B0	A1 : B0	NA
BRCA	TCGA.A8.A08R.01A	LMNB2::GNG7	0.71	tier1	CDS-5UTR	A1 : B0	A1 : B0	NA
BRCA	TCGA.LL.A8F5.01A	LMO7::UCHL3	1.0	tier1	NA	A0 : B0	A0 : B0	NA
BRCA	TCGA.A2.A0D2.01A	LNPEP::CAST	0.17	tier1	CDS-5UTR	A0 : B0	A0 : B0	validated
BRCA	TCGA.A8.A09A.01A	LNX1::GABRB1	0.082	tier1	In-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.C8.A12L.01A	LONP1::MAP2K7	0.39	tier1	Out-of-frame	A1 : B1	A0 : B0	validated
BRCA	TCGA.AC.A2BK.01A	LONP1::ZNF780B	0.28	tier1	CDS-5UTR	A0 : B0	A0 : B0	non-validated
BRCA	TCGA.A2.A0D0.01A	LPAR3::ST6GALNAC3	0.019	tier1	Out-of-frame	A0 : B0	A0 : B0	validated
BRCA	TCGA.D8.A1XL.01A	LPCAT2::C19orf29	0.2	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.E2.A10F.01A	LPHN3::PPP3CA	0.32	tier1	In-frame	A0 : B0	A0 : B1	NA
BRCA	TCGA.A8.A06U.01A	LPP::FAM108C1	0.13	tier1	5UTR-CDS	A0 : B0	A0 : B0	NA
BRCA	TCGA.AQ.A04L.01B	LPP::SPATA16	0.39	tier2	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.E9.A1RH.01A	LPP::TP63	0.26	tier1	5UTR-CDS	A0 : B0	A0 : B0	NA
BRCA	TCGA.A8.A07L.01A	LRBA::CASP12	0.044	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.C8.A1HN.01A	LRBA::ESF1	1.2	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.BH.A18T.01A	LRBA::GRIK3	3.4	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.EW.A6SD.01A	LRBA::PPARGC1A	0.055	tier1	In-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.AO.A0JA.01A	LRCH3::MED12L	0.81	tier1	In-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.AR.A1AH.01A	LRIG3::PIP4K2C	1.5	tier1	CDS-3UTR	A0 : B0	A0 : B0	NA
BRCA	TCGA.A8.A07F.01A	LRP11::ULBP2	100.0	tier1	CDS-3UTR	A0 : B0	A0 : B0	NA
BRCA	TCGA.AR.A0TV.01A	LRP12::KCNB2	0.15	tier1	CDS-5UTR	A1 : B0	A0 : B0	NA
BRCA	TCGA.AC.A6IX.01A	LRP12::LAPTM4B	0.46	tier1	Out-of-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.AC.A6IX.06A	LRP12::LAPTM4B	0.46	tier1	Out-of-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.BH.A0B7.01A	LRP12::RIMS2	1.2	tier1	In-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.E2.A14X.01A	LRP12::TRAPPC9	0.66	tier1	Out-of-frame	A1 : B0	A0 : B0	non-validated
BRCA	TCGA.A2.A04Y.01A	LRP12::VPS13B	0.17	tier1	CDS-5UTR	A1 : B0	A0 : B0	NA
BRCA	TCGA.BH.A0GY.01A	LRP3::THAP8	0.83	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.PE.A5DC.01A	LRP5::ALKBH5	0.16	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.BH.A0W3.01A	LRP5::CASQ2	0.14	tier1	Out-of-frame	A1 : B1	A0 : B0	NA
BRCA	TCGA.A8.A09I.01A	LRP5::DLG2	0.42	tier1	In-frame	A0 : B0	A0 : B0	non-validated
BRCA	TCGA.A1.A0SQ.01A	LRP5::MOGAT2	0.17	tier2	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.BH.A18L.01A	LRP5::NOX4	0.81	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.E2.A150.01A	LRP5::ZNF507	0.12	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.A7.A0CG.01A	LRP6::GPR19	0.62	tier1	CDS-5UTR	A1 : B0	A0 : B0	NA
BRCA	TCGA.A8.A08F.01A	LRP8::RAD51C	0.21	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.AC.A6IW.01A	LRP8::TMEM217	0.24	tier1	CDS-5UTR	A0 : B0	A0 : B0	NA
BRCA	TCGA.OL.A66I.01A	LRPPRC::CYTIP	1.8	tier1	NA	A0 : B0	A0 : B0	NA
BRCA	TCGA.C8.A12W.01A	LRR1::KCNH5	0.26	tier2	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.A2.A3XW.01A	LRR1::MTHFD1	0.21	tier1	Out-of-frame	A0 : B1	A0 : B1	NA
BRCA	TCGA.AR.A24Z.01A	LRRC1::DAAM2	0.7	tier1	CDS-5UTR	A1 : B0	A0 : B0	non-validated
BRCA	TCGA.C8.A1HG.01A	LRRC1::FRY	1.2	tier1	Out-of-frame	A1 : B1	A0 : B0	NA
BRCA	TCGA.AR.A0U4.01A	LRRC16A::MRS2	2.2	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.A8.A09N.01A	LRRC20::NODAL	0.7	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.A7.A4SD.01A	LRRC29::FHOD1	0.023	tier3	5UTR-CDS	A0 : B0	A0 : B0	NA
BRCA	TCGA.AO.A1KR.01A	LRRC37B::RAD51C	0.5	tier2	5UTR-CDS	A0 : B0	A0 : B0	NA
BRCA	TCGA.A8.A0A7.01A	LRRC59::NUP107	1.3	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.E9.A1NC.01A	LRRC59::SPAG9	0.25	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.E2.A15T.01A	LRRC6::EXT1	0.15	tier1	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.B6.A0RE.01A	LRRC8A::CCBL1	1.2	tier2	CDS-5UTR	A0 : B0	A0 : B0	non-validated
BRCA	TCGA.E2.A158.01A	LRRC8A::GON4L	0.36	tier2	5UTR-CDS	A0 : B1	A0 : B0	NA
BRCA	TCGA.A8.A09G.01A	LRRC8D::C1orf168	0.01	tier1	5UTR-CDS	A0 : B0	A0 : B0	NA
BRCA	TCGA.A2.A4RW.01A	LRRK1::ADAMTS17	0.003	tier1	In-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.E2.A159.01A	LRSAM1::DENND1A	0.004	tier2	5UTR-CDS	A0 : B0	A0 : B0	NA
BRCA	TCGA.A8.A097.01A	LRTOMT::NFIC	1.1	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.A8.A08S.01A	LRTOMT::UVRAG	0.56	tier1	5UTR-CDS	A0 : B0	A0 : B0	validated
BRCA	TCGA.BH.A204.01A	LSAMP::C3orf70	0.009	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.AR.A2LR.01A	LSAMP::GAP43	1.4	tier3	Out-of-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.AQ.A0Y5.01A	LSM14A::ACTN4	2.3	tier1	Out-of-frame	A1 : B1	A0 : B1	NA
BRCA	TCGA.AR.A24N.01A	LTBP1::BIRC6	0.084	tier1	In-frame	A1 : B1	A0 : B1	NA
BRCA	TCGA.AN.A0XN.01A	LTBP1::CDH23	0.72	tier3	In-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.BH.A0RX.01A	LTBP1::TTC27	2.3	tier4	In-frame	A1 : B0	A0 : B0	NA
BRCA	TCGA.AR.A0TU.01A	LTBP1::ZDHHC2	1.4	tier1	In-frame	A0 : B0	A0 : B0	NA
BRCA	TCGA.EW.A1PH.01A	LTBP4::MYO1B	0.93	tier1	Out-of-frame	A0 : B0	A0 : B0	non-validated
BRCA	TCGA.PE.A5DE.01A	LTF::CFB	1.4	tier3	NA	A0 : B0	A0 : B0	NA
BRCA	TCGA.A7.A26G.01A	LTF::CHD1	7.6	tier4	NA	A0 : B0	A0 : B0	non-validated
BRCA	TCGA.AO.A1KO.01A	LTF::NCALD	0.4	tier3	3UTR-5UTR	A0 : B0	A0 : B0	NA
BRCA